![](files/infoQ.gif)
endonuclease [Bacteriophage APSE-2]
PDDEXK family nuclease( domain architecture ID 1750065)
PDDEXK family nuclease similar to Halobacterium salinarum endonuclease NucS 1 that cleaves both 3' and 5' ssDNA extremities of branched DNA structures
List of domain hits
![](files/help.png)
Name | Accession | Description | Interval | E-value | ||
PDDEXK_nuclease-like super family | cl40440 | PDDEXK family nucleases; Superfamily of PDDEXK nucleases including very short patch repair ... |
6-84 | 3.78e-18 | ||
PDDEXK family nucleases; Superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. The actual alignment was detected with superfamily member cd22365: Pssm-ID: 477358 Cd Length: 92 Bit Score: 72.10 E-value: 3.78e-18
|
||||||
Name | Accession | Description | Interval | E-value | ||
VRR-NUC-like | cd22365 | Virus-type replication repair nuclease; This model characterizes a set of nucleases that ... |
6-84 | 3.78e-18 | ||
Virus-type replication repair nuclease; This model characterizes a set of nucleases that resemble Holliday-junction resolving enzymes. They belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. Pssm-ID: 411769 Cd Length: 92 Bit Score: 72.10 E-value: 3.78e-18
|
||||||
VRR_NUC | smart00990 | This model contains proteins with the VRR-NUC domain; It is associated with members of the PD- ... |
16-84 | 3.19e-12 | ||
This model contains proteins with the VRR-NUC domain; It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI. Pssm-ID: 214959 Cd Length: 108 Bit Score: 57.52 E-value: 3.19e-12
|
||||||
Name | Accession | Description | Interval | E-value | ||
VRR-NUC-like | cd22365 | Virus-type replication repair nuclease; This model characterizes a set of nucleases that ... |
6-84 | 3.78e-18 | ||
Virus-type replication repair nuclease; This model characterizes a set of nucleases that resemble Holliday-junction resolving enzymes. They belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. Pssm-ID: 411769 Cd Length: 92 Bit Score: 72.10 E-value: 3.78e-18
|
||||||
VRR_NUC | smart00990 | This model contains proteins with the VRR-NUC domain; It is associated with members of the PD- ... |
16-84 | 3.19e-12 | ||
This model contains proteins with the VRR-NUC domain; It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI. Pssm-ID: 214959 Cd Length: 108 Bit Score: 57.52 E-value: 3.19e-12
|
||||||
Blast search parameters | ||||
|