NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|254688513|ref|YP_003084140|]
View 

putative Rep protein [Circovirus-like genome SAR-B]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Viral_Rep super family cl03577
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 7-102 5.03e-13

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


The actual alignment was detected with superfamily member pfam02407:

Pssm-ID: 280553  Cd Length: 82  Bit Score: 61.81  E-value: 5.03e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254688513    7 WVFTLNNPSiEEYPLKFEETssgrrypiakwelpratLAFLGCGRERGQSNTPHLQGLLISSRPVSLKSLKKLNP-RAHW 85
Cdd:pfam02407   4 WCFTLNNPT-EFLSLFSQDE-----------------LKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPgRAHL 65

                          90
                  ....*....|....*..
gi 254688513   86 EPMRGSFKQAREYCEKE 102
Cdd:pfam02407  66 EIARGSQEEARDYCMKE 82
 
Name Accession Description Interval E-value
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 7-102 5.03e-13

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


Pssm-ID: 280553  Cd Length: 82  Bit Score: 61.81  E-value: 5.03e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254688513    7 WVFTLNNPSiEEYPLKFEETssgrrypiakwelpratLAFLGCGRERGQSNTPHLQGLLISSRPVSLKSLKKLNP-RAHW 85
Cdd:pfam02407   4 WCFTLNNPT-EFLSLFSQDE-----------------LKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPgRAHL 65

                          90
                  ....*....|....*..
gi 254688513   86 EPMRGSFKQAREYCEKE 102
Cdd:pfam02407  66 EIARGSQEEARDYCMKE 82
 
Name Accession Description Interval E-value
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 7-102 5.03e-13

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


Pssm-ID: 280553  Cd Length: 82  Bit Score: 61.81  E-value: 5.03e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254688513    7 WVFTLNNPSiEEYPLKFEETssgrrypiakwelpratLAFLGCGRERGQSNTPHLQGLLISSRPVSLKSLKKLNP-RAHW 85
Cdd:pfam02407   4 WCFTLNNPT-EFLSLFSQDE-----------------LKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPgRAHL 65

                          90
                  ....*....|....*..
gi 254688513   86 EPMRGSFKQAREYCEKE 102
Cdd:pfam02407  66 EIARGSQEEARDYCMKE 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH