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Conserved domains on  [gi|301353319|ref|YP_003795545|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Panonychus citri]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-103 2.58e-13

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 60.56  E-value: 2.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319   1 MTMLILMLILYLLYYFFLNTSKSLNLNFSSMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFISLMIYFN-----F 75
Cdd:MTH00161   6 LLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFktsnmM 85

                         90       100
                 ....*....|....*....|....*...
gi 301353319  76 NFLMMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:MTH00161  86 SWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-103 2.58e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 60.56  E-value: 2.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319   1 MTMLILMLILYLLYYFFLNTSKSLNLNFSSMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFISLMIYFN-----F 75
Cdd:MTH00161   6 LLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFktsnmM 85

                         90       100
                 ....*....|....*....|....*...
gi 301353319  76 NFLMMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:MTH00161  86 SWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-96 2.51e-06

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 42.03  E-value: 2.51e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 301353319   32 YECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFI---SLMIYFNFNF-LMMMMVFIFFLIFMMLYEW 96
Cdd:pfam00507  20 YECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLfpwAVSFRELGWFgFVEMLIFIAILLVGLVYAW 88
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-103 4.02e-04

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 36.64  E-value: 4.02e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 301353319  32 YECGYMNLNYSRFYFSIYNYMYLILFLILDLE-IFFISLMIYFN---FNFLMMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:COG0838   42 YECGIEPVGDARIRFSVRYYLVALLFVIFDVEvVFLFPWAVVFRelgWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-103 2.58e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 60.56  E-value: 2.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319   1 MTMLILMLILYLLYYFFLNTSKSLNLNFSSMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFISLMIYFN-----F 75
Cdd:MTH00161   6 LLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFktsnmM 85

                         90       100
                 ....*....|....*....|....*...
gi 301353319  76 NFLMMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:MTH00161  86 SWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 21-103 1.00e-07

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 46.13  E-value: 1.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319  21 SKSLNLNFSSMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFISLMIYFNFNF-----LMMMMVFIFFLIFMMLYE 95
Cdd:MTH00042  27 SRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITnpstlLPISLIFLIILTIGLVYE 106


                 ....*...
gi 301353319  96 WINLSLDW 103
Cdd:MTH00042 107 WVNGGLEW 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-96 2.51e-06

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 42.03  E-value: 2.51e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 301353319   32 YECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFI---SLMIYFNFNF-LMMMMVFIFFLIFMMLYEW 96
Cdd:pfam00507  20 YECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLfpwAVSFRELGWFgFVEMLIFIAILLVGLVYAW 88
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 29-103 1.14e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 38.30  E-value: 1.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319  29 SSMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEI-----FFISLMIYFNFNFLMMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:MTH00148  36 SSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIvllfpVLQSLGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 29-103 1.83e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 37.77  E-value: 1.83e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 301353319  29 SSMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFIS--LMIYFNFNFL--MMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:MTH00055  39 VSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFpwCVVYNQIGLFgfWVMYLFLIILTIGLIYEWVKGGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 30-103 2.82e-04

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 37.15  E-value: 2.82e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 301353319  30 SMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFI-----SLMIYFNFNFlMMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:PRK06602  43 SPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLfpwavSFREIGWLGF-VEAMIFILVLLVGLVYLWRKGALDW 120
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-103 4.02e-04

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 36.64  E-value: 4.02e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 301353319  32 YECGYMNLNYSRFYFSIYNYMYLILFLILDLE-IFFISLMIYFN---FNFLMMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:COG0838   42 YECGIEPVGDARIRFSVRYYLVALLFVIFDVEvVFLFPWAVVFRelgWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 30-103 1.35e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 35.35  E-value: 1.35e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 301353319  30 SMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFISLMIYFNFNFLMMMMVFIFFLIFMML-----YEWINLSLDW 103
Cdd:MTH00069  34 SPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLtlgliYEWIQGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 29-103 1.35e-03

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 35.60  E-value: 1.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319  29 SSMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFIS-----LMIYFNFNFLMMMMVFIFFLIFMMLYEWINLSLDW 103
Cdd:MTH00012  36 TSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMpvptiLMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 30-103 1.57e-03

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 35.04  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319  30 SMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFI-------SLMIYFNFnflMMMMVFIFFLIFMMLYEWINLSLD 102
Cdd:MTH00018  35 SAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLfpwcvlyNQIAPFGF---WTMVGFLFILTLGLIYEWIKGGLE 111


                 .
gi 301353319 103 W 103
Cdd:MTH00018 112 W 112
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 29-103 4.67e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 33.76  E-value: 4.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319  29 SSMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEI-FFISLMIYFNFNFLMMMMVFIFFLIFMML----YEWINLSLDW 103
Cdd:MTH00106  34 ASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIaLLLPLPWASQTNNLNTMLTMALLLISLLAlslaYEWTQKGLEW 113
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 30-103 7.54e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 33.35  E-value: 7.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301353319  30 SMYECGYMNLNYSRFYFSIYNYMYLILFLILDLEIFFI------SLMIYFNFNFLMMMMVFIfFLIFMMLYEWINLSLDW 103
Cdd:MTH00136  36 SPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlplpwgDQLPSPLLTFFWATAVLI-LLTLGLIYEWLQGGLEW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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