|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-338 |
1.05e-79 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 246.27 E-value: 1.05e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 1 MNLNKHLFLSSMMMGSMLSISSNSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILMILMKI 80
Cdd:MTH00160 3 MNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 81 PVGwekeEMMPSMMISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMSYCIENPqFISSFSILSIFIG 160
Cdd:MTH00160 83 MLF----NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 161 AIGGLNQTSLRQIMVYSSISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMI 240
Cdd:MTH00160 158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 241 LSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSIILNNKETPWSMDIQTWKFKIILPM 320
Cdd:MTH00160 238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
|
330
....*....|....*...
gi 304322839 321 MVMISNLCLISTSSLISN 338
Cdd:MTH00160 318 LSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-281 |
2.91e-26 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 105.86 E-value: 2.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLM-VNEKNMMINESSMKYFILQVMAPTMLLFSILMI-----------LMKIPVGW--EKEE 88
Cdd:pfam00361 2 NDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGlnSSGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 89 MMPSMMISSSLLIKTGAAPFQFWFPEVMKPSSW-INCLIVMTWQKIALMMVM-------SYCIENPQFISSFSILSIFIG 160
Cdd:pfam00361 82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLLG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 161 AIGGLNQTSLRQIMVYSSISHLGWLIGSMMV----SETLWELYFTIYSTLSSIMILLFN-----QSNLFIINQMFMLSSY 231
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAKT 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 304322839 232 SMEYKFIMILSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILT 281
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
52-289 |
1.19e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 83.63 E-value: 1.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 52 NESSMKYFILQVMAPTMLLFSILMI--------LMKIPVGWEKEEMMPSMMISSSLLI------KTGAAPFQFWFPEVMK 117
Cdd:COG1007 152 SEAALKYFLLGALSSGFLLYGISLLygatgslnLAGIAAALAAGGANSPLLLLGLVLVlaglafKLSAVPFHMWTPDVYE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 118 PSSWINCLIVMTWQKIA----LMMVMSYCIEN-----PQFISSFSILSIFIGAIGGLNQTSLRQIMVYSSISHLGW-LIG 187
Cdd:COG1007 232 GAPTPVTAFLATAPKIAafaaLLRLLVEAFPGlaadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYlLLG 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 188 SMMVSETLWE---LYFTIYS--TLSSIMILLFNQSNLFIINQmfmLSSYSMEYK------FIMILSMMSLGGLPPFLGFL 256
Cdd:COG1007 312 LAAGTPLGVSaalFYLLAYLfmNLGAFAVILLLSRKGGEAEE---IEDLAGLARrspllaLAMTIFLLSLAGIPPTAGFF 388
|
250 260 270
....*....|....*....|....*....|...
gi 304322839 257 PKWLIIQLTVENSMTLMISTMVILTAINFYYYM 289
Cdd:COG1007 389 GKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
52-288 |
7.19e-15 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 74.98 E-value: 7.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 52 NESSMKYFILQVMAPTMLLFSILMI-----------LMKIPVGWEKEEMMPSM---MISSSLLIKTGAAPFQFWFPEVMK 117
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIygftgslnfedLLLFLSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 118 PSSWINCLIVMTWQKIA----LMMVMSYCIEN-----PQFISSFSILSIFIGAIGGLNQTSLRQIMVYSSISHLGW-LIG 187
Cdd:TIGR01770 232 GAPTPVTAFFSIVPKIAifavFLRLFLYILFGfseawQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIG 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 188 SMMVSETLWE---LYFTIYSTLS----SIMILLFNQSNLFI--INQMFMLSSYSMEYKFIMILSMMSLGGLPPFLGFLPK 258
Cdd:TIGR01770 312 LLAGTLEGIKavlFYIFIYALMSlgafGVLSLLRSYKDEWIeyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGK 391
|
250 260 270
....*....|....*....|....*....|
gi 304322839 259 WLIIQLTVENSMTLMISTMVILTAINFYYY 288
Cdd:TIGR01770 392 FYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-338 |
1.05e-79 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 246.27 E-value: 1.05e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 1 MNLNKHLFLSSMMMGSMLSISSNSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILMILMKI 80
Cdd:MTH00160 3 MNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 81 PVGwekeEMMPSMMISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMSYCIENPqFISSFSILSIFIG 160
Cdd:MTH00160 83 MLF----NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 161 AIGGLNQTSLRQIMVYSSISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMI 240
Cdd:MTH00160 158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 241 LSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSIILNNKETPWSMDIQTWKFKIILPM 320
Cdd:MTH00160 238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
|
330
....*....|....*...
gi 304322839 321 MVMISNLCLISTSSLISN 338
Cdd:MTH00160 318 LSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
23-329 |
5.01e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 167.33 E-value: 5.01e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILM--------ILMKIPVGWekeemmPSMM 94
Cdd:MTH00105 24 SHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIInlmysgqwTITKLTNPT------ASTL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 95 ISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVM---SYCIeNPQFISSFSILSIFIGAIGGLNQTSLR 171
Cdd:MTH00105 98 MTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSI-NPNLLLTLAILSILIGGWGGLNQTQLR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 172 QIMVYSSISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMILSMMSLGGLPP 251
Cdd:MTH00105 177 KILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPP 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 252 FLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSII-----LNNKETPWSMdiQTWKFKIILPMMVMISN 326
Cdd:MTH00105 257 LTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtmfpsTNNMKMKWQF--ENTKPMTLLPTLIILST 334
|
...
gi 304322839 327 LCL 329
Cdd:MTH00105 335 MLL 337
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
23-297 |
2.64e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 163.07 E-value: 2.64e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILMILMKIPvGWEKEEM---MPSMMISSSL 99
Cdd:MTH00112 24 NHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG-QWDITQLtnpTSCTLLTLAL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 100 LIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIA--LMMVMSYCIENPQFISSFSILSIFIGAIGGLNQTSLRQIMVYS 177
Cdd:MTH00112 103 AMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAplTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFS 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 178 SISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMILSMMSLGGLPPFLGFLP 257
Cdd:MTH00112 183 SIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMP 262
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 304322839 258 KWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSII 297
Cdd:MTH00112 263 KWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
23-337 |
9.45e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 161.63 E-value: 9.45e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILM----------ILMKIPvgwekeemMPS 92
Cdd:MTH00070 24 NHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawftgewtiMNMQTP--------LPT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 93 MMISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALM--MVMSYCIENPQFISSFSILSIFIGAIGGLNQTSL 170
Cdd:MTH00070 96 IMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMalLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 171 RQIMVYSSISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMILSMMSLGGLP 250
Cdd:MTH00070 176 RKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLP 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 251 PFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSIILNNKETPWSMdiQTWKFK----IILPMMVMISN 326
Cdd:MTH00070 256 PTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSK--LYWRFKnktnNLLSLTIILSL 333
|
330
....*....|.
gi 304322839 327 LCLISTSSLIS 337
Cdd:MTH00070 334 MLLPITPTILN 344
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-324 |
3.00e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 159.67 E-value: 3.00e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 1 MNLNKHLFLSSMMMGSMLSISSNSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILMilmki 80
Cdd:MTH00144 2 SSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLI----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 81 pVGWEKEEMMPSMMISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMSYCIENPQFISSF---SILSI 157
Cdd:MTH00144 77 -MYNLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcviSVLSA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 158 FIGAIGGLNQTSLRQIMVYSSISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSySMEYKF 237
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKP-SYKTGL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 238 IMILSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSIILNNKEtpwsmdIQTWKFKII 317
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKS------KKSNSSKVL 308
|
....*..
gi 304322839 318 LPMMVMI 324
Cdd:MTH00144 309 NSSIISL 315
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
7-325 |
2.62e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 151.75 E-value: 2.62e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 7 LFLSSMMMGSMLSISSNSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILMILMKIPVgwek 86
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 87 eEMMPSMMISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMSYCIENPQFISSFSILSIFIGAIGGLN 166
Cdd:MTH00197 78 -SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 167 QTSLRQIMVYSSISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMILSMMSL 246
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 304322839 247 GGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSIILNNKETPWSMDIQTWKFKIILPMMVMIS 325
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLP 315
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
23-295 |
2.96e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 152.39 E-value: 2.96e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILMILMKIPvGW---EKEEMMPSMMISSSL 99
Cdd:MTH00041 24 NHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSG-SWsinGPLNTLSSIIITLAL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 100 LIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMSYCIENP--QFISSFSILSIFIGAIGGLNQTSLRQIMVYS 177
Cdd:MTH00041 103 ALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLnsNILILCGILSVLVGGWGGLNQTQTRKILAFS 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 178 SISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMILSMMSLGGLPPFLGFLP 257
Cdd:MTH00041 183 SIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLN 262
|
250 260 270
....*....|....*....|....*....|....*...
gi 304322839 258 KWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSS 295
Cdd:MTH00041 263 KFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNT 300
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
23-325 |
8.41e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 151.27 E-value: 8.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILMILMKIPVG--WEKEEMMPSMMISSSLL 100
Cdd:MTH00200 24 SHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWgiSEMLGPLSETLILLALA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 101 IKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMS--YCIENPQFISSFSILSIFIGAIGGLNQTSLRQIMVYSS 178
Cdd:MTH00200 104 LKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSS 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 179 ISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMILSMMSLGGLPPFLGFLPK 258
Cdd:MTH00200 184 IAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPK 263
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 304322839 259 WLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSIILNNKETPWSMDIQTWKFKIILPMMVMIS 325
Cdd:MTH00200 264 WLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLL 330
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
23-320 |
1.29e-42 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 150.32 E-value: 1.29e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFSILMILMKipvgWEKEEMMPSMMISSSLLIK 102
Cdd:MTH00011 26 NNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF----PSLLKNITALMLLVSLMLK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 103 TGAAPFQFWFPEVMKPSSWINCLIVMTWQKIA--LMMVMSYCIENPQFISSFSILSIFIGAIGGLNQTSLRQIMVYSSIS 180
Cdd:MTH00011 102 LGMAPCHFWFPSVMSSISWTLCLILSTWQKIAplSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 181 HLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMILSMMSLGGLPPFLGFLPKWL 260
Cdd:MTH00011 182 HMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLM 261
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 261 IIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSIILNNKETPWSMDIQTWKFKIILPM 320
Cdd:MTH00011 262 AIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISM 321
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
25-305 |
3.29e-39 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 141.48 E-value: 3.29e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 25 WFGVWMGLEKDLLSFIPLMVNEKNMMINESSMKYFILQVMAPTMLLFS------------ILMILMKIPVgwekeemmps 92
Cdd:MTH00135 26 WLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFAsttnawltgqwdIQQMSHPLPT---------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 93 MMISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIA---LMMVMSYciENPQFISSFSILSIFIGAIGGLNQTS 169
Cdd:MTH00135 96 TMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLApfaLILQIAP--TNPTLLITLGLTSTLVGGWGGLNQTQ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 170 LRQIMVYSSISHLGWLIGSMMVSETLWELYFTIYSTLSSIMILLFNQSNLFIINQMFMLSSYSMEYKFIMILSMMSLGGL 249
Cdd:MTH00135 174 LRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGL 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 304322839 250 PPFLGFLPKWLIIQLTVENSMTLmISTMVILTAI---NFY----YYMQMKFSSIILNNKeTPW 305
Cdd:MTH00135 254 PPLTGFMPKWLILQELTKQDLPL-TATLAALSALlslYFYlrlsYAMTLTISPNTLNGT-TPW 314
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-281 |
2.91e-26 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 105.86 E-value: 2.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLM-VNEKNMMINESSMKYFILQVMAPTMLLFSILMI-----------LMKIPVGW--EKEE 88
Cdd:pfam00361 2 NDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGlnSSGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 89 MMPSMMISSSLLIKTGAAPFQFWFPEVMKPSSW-INCLIVMTWQKIALMMVM-------SYCIENPQFISSFSILSIFIG 160
Cdd:pfam00361 82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLLG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 161 AIGGLNQTSLRQIMVYSSISHLGWLIGSMMV----SETLWELYFTIYSTLSSIMILLFN-----QSNLFIINQMFMLSSY 231
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAKT 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 304322839 232 SMEYKFIMILSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILT 281
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
52-289 |
1.19e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 83.63 E-value: 1.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 52 NESSMKYFILQVMAPTMLLFSILMI--------LMKIPVGWEKEEMMPSMMISSSLLI------KTGAAPFQFWFPEVMK 117
Cdd:COG1007 152 SEAALKYFLLGALSSGFLLYGISLLygatgslnLAGIAAALAAGGANSPLLLLGLVLVlaglafKLSAVPFHMWTPDVYE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 118 PSSWINCLIVMTWQKIA----LMMVMSYCIEN-----PQFISSFSILSIFIGAIGGLNQTSLRQIMVYSSISHLGW-LIG 187
Cdd:COG1007 232 GAPTPVTAFLATAPKIAafaaLLRLLVEAFPGlaadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYlLLG 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 188 SMMVSETLWE---LYFTIYS--TLSSIMILLFNQSNLFIINQmfmLSSYSMEYK------FIMILSMMSLGGLPPFLGFL 256
Cdd:COG1007 312 LAAGTPLGVSaalFYLLAYLfmNLGAFAVILLLSRKGGEAEE---IEDLAGLARrspllaLAMTIFLLSLAGIPPTAGFF 388
|
250 260 270
....*....|....*....|....*....|...
gi 304322839 257 PKWLIIQLTVENSMTLMISTMVILTAINFYYYM 289
Cdd:COG1007 389 GKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
52-289 |
2.21e-17 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 82.56 E-value: 2.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 52 NESSMKYFILQVMAPTMLLFSILMI--------LMKIPVGWEKEEMMPSMMISSSLLI------KTGAAPFQFWFPEVMK 117
Cdd:PRK05777 153 LEAAIKYFVLGALASGFLLYGMSLLygatgslsFAGIAKALADGSGNSLLLLFGLVFLlvglafKLSAVPFHMWTPDVYE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 118 PSSWINCLIVMTWQKIALMMVM---------SYCIENPQFISSFSILSIFIGAIGGLNQTSLRQIMVYSSISHLGW-LIG 187
Cdd:PRK05777 233 GAPTPVTAFLATAPKIAAFAVLlrllvvafgGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYlLVG 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 188 SMMVSETLWE---LYFTIY--STLSSIMILLFNQSNLFI---INQMFMLSSYSMEYKFIMILSMMSLGGLPPFLGFLPKW 259
Cdd:PRK05777 313 LAAGTAEGYSavlFYLLAYlfMTLGAFGVISLLRRKGGEaesISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKF 392
|
250 260 270
....*....|....*....|....*....|
gi 304322839 260 LIIQLTVENSMTLMISTMVILTAINFYYYM 289
Cdd:PRK05777 393 YVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
23-291 |
1.95e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 76.22 E-value: 1.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 23 NSWFGVWMGLEKDLLSFIPLMVNEKNMMIN-ESSMKYFILQVMAPTMLLFS---------------ILMILMKIPVGWEK 86
Cdd:MTH00196 13 SNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGcallcgttgglhlsyINLVLNSGQSFSSV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 87 EEMMPSMMISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMSYCIENPQFISSFSILSIFIGAIGGLN 166
Cdd:MTH00196 93 SVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLFVGAIGALN 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 167 QTSLRQIMVYSSISHLGWLIGSMMV----SETLWELYFTIYSTLSS---IMILLFNQSNLFIINqmfmLSSYSMEYKFIM 239
Cdd:MTH00196 173 QTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSIcvfSIILALNVYKNLIIE----FSGLSRRLPILA 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 304322839 240 I---LSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYMQM 291
Cdd:MTH00196 249 ItlaLTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
52-288 |
7.19e-15 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 74.98 E-value: 7.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 52 NESSMKYFILQVMAPTMLLFSILMI-----------LMKIPVGWEKEEMMPSM---MISSSLLIKTGAAPFQFWFPEVMK 117
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIygftgslnfedLLLFLSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 118 PSSWINCLIVMTWQKIA----LMMVMSYCIEN-----PQFISSFSILSIFIGAIGGLNQTSLRQIMVYSSISHLGW-LIG 187
Cdd:TIGR01770 232 GAPTPVTAFFSIVPKIAifavFLRLFLYILFGfseawQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIG 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 188 SMMVSETLWE---LYFTIYSTLS----SIMILLFNQSNLFI--INQMFMLSSYSMEYKFIMILSMMSLGGLPPFLGFLPK 258
Cdd:TIGR01770 312 LLAGTLEGIKavlFYIFIYALMSlgafGVLSLLRSYKDEWIeyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGK 391
|
250 260 270
....*....|....*....|....*....|
gi 304322839 259 WLIIQLTVENSMTLMISTMVILTAINFYYY 288
Cdd:TIGR01770 392 FYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
25-288 |
4.22e-13 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 69.66 E-value: 4.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 25 WFGVWMGLEKDLLS-FIPLMVNEKNMMINESSMKYFILQVMAPTMLLF------------SILMILMKIPVGWEKeemmp 91
Cdd:MTH00199 119 WLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFgcallygltgetSIQGINSILTGDVGK----- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 92 sMMISSSLLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMSYCIENPQFISSFSILSIFIGAIGGLNQTSLR 171
Cdd:MTH00199 194 -ILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQTKIK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 172 QIMVYSSISHLGW-----LIGSM--MVSETLWELYFTIYSTLSSIMILLFNQSNLFIINqmfmLSSYSMEYKFI---MIL 241
Cdd:MTH00199 273 RLLAYSGIGHMGFilfgvAIGSFesIQASLIYMIIYVIMSICSFSIILSLKLTKGLIVE----VSGLSRKNPVIaltLAL 348
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 304322839 242 SMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYY 288
Cdd:MTH00199 349 TFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYY 395
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
99-291 |
6.37e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 63.34 E-value: 6.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 99 LLIKTGAAPFQFWFPEVMKPSSWINCLIVMTWQKIALMMVMSYCIENPQFISSFSILSIFIGAIGGLNQTSLRQIMVYSS 178
Cdd:MTH00198 309 ILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSG 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 179 ISHLGW-LIG-------SMMVSETLWELYFTiySTLSSIMIL-------------------LFNQSNLFIINQMFMLSSY 231
Cdd:MTH00198 389 IGHIGFiLIGvsagtyeSLQASWTYAVTYLV--SALASFTVIctleefgtrtptsrqrdgsFGNYNLVRRLVDLTILSRG 466
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 304322839 232 SMEYKFIMILSMMSLGGLPPFLGFLPKWLII--QLTVENSMTLMISTMV-----ILTAINFYYYMQM 291
Cdd:MTH00198 467 QPYIAFSLAIVFLSLAGIPPLLGFLGKWFILvgSIKIAFSSSLSIYYLValfaiICTCISAFYYIRI 533
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
99-289 |
1.03e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 59.39 E-value: 1.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 99 LLIKTGAAPFQFWFPEVM-KPSSWINCLI--VMTwqKIAL--MMVMSYCIENPQFISS-------FSILSIFIGAIGGLN 166
Cdd:COG0651 215 FGIKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVyaILRVLTLLFGADPALFlgtlllvLGLLTMLVGALGALA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 167 QTSLRQIMVYSSISHLGW-LIGSMMVSETLWE--LYFTIYSTLssIMILLF----------NQSNLFIINQMFMLSSYSM 233
Cdd:COG0651 293 QRDLKRLLAYSSVSQIGYiLLGLGLGTPLGLAgaLFHLLNHAL--AKALLFlaagaieratGTRDLDKLGGLGKRMPLTA 370
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 304322839 234 eykFIMILSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYM 289
Cdd:COG0651 371 ---AAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFV 423
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
53-323 |
2.32e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 52.02 E-value: 2.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 53 ESSMKYFILQVMAPTMLLFSILM------------ILMKIPVGWEKEEMMPSMMISSSLLIKTGAAPFQFWFPEV--MKP 118
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALlygqygtlnmayLAVKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAypAAP 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 119 SSWINCLIVMTWQKIALMMVMSYCIENPQF--------ISSFSILSIFIGAIGGLNQTSLRQIMVYSSISHLGWLI---- 186
Cdd:PRK08376 252 SSISAMLLVIKQAGLYALARVLFSIYGPAInlatvgwvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglg 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 187 ------GSMMVSET-LWELYFTIYSTLSSIMI--LLFNQSNLFI-------INQMFMLSSYSMEYKFIMILSMMSLGGLP 250
Cdd:PRK08376 332 vglaalGDPAMASYgEIALAGGIYHIVNHALYkaLLFLTAGAVIyetgtrnLNELGGLARTMPKTTIAFLIGAAAIVGLP 411
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 304322839 251 PFLGFLPKWLIIQLTVENSMTLMISTMV--ILTAINFYYYMQMKF----SSIILNNKETPWSMdiqtwkfkiILPMMVM 323
Cdd:PRK08376 412 PFNGFASKWLIYESSALFNPILGVIAMIgsVLTLASFVKVFHTAFfgppSEKVMNVKEPPKPM---------LVPMLIL 481
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
155-324 |
4.44e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 48.04 E-value: 4.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 155 LSIFIGAIGGLNQTSLRQIMVYSSISHLGWLIGSMMVSETLWELYFTIYSTLSSIM-ILLFNQSNLFI-------INQMF 226
Cdd:PRK12667 304 VSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAkSLLFLASGVFIhaagtrdIDELA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 227 MLSSYSMEYKFIMILSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYYMQMKFSSIILNNKETPWS 306
Cdd:PRK12667 384 GLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEV 463
|
170
....*....|....*...
gi 304322839 307 MDIQTWKFKIILPMMVMI 324
Cdd:PRK12667 464 EHKESPSMSVVILVLALA 481
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
99-287 |
4.79e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 47.95 E-value: 4.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 99 LLIKTGAAPFQFWFPEVM-KPSSWINCLIVMTWQKIALMMVM--SYCIENPQFISS---------FSILSIFIGAIGGLN 166
Cdd:PRK08375 212 LALKAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALIriYFTVFGGDFRFAlglgwllavLALLSMLVGSLAALG 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 167 QTSLRQIMVYSSISHLGWLIgsmmvsetlwelyftiystlssIMILLFNQSNL-----FIINQMFM-----LSSYSMEYK 236
Cdd:PRK08375 292 QDDVKRVLAYSTVSQMGYIL----------------------LGLALLTPLALaagllHLLHHALMkgalfLAAGAIEVT 349
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 304322839 237 F---------------------IMILSMmSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYY 287
Cdd:PRK08375 350 YgtrrlselsglgrrmpltaaaFAVASL-SLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLY 420
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
102-258 |
5.39e-05 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 45.03 E-value: 5.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 102 KTGAAPFQFWFPEVM---KPSSWINCLIVMTWQKIALMMVMSYCIENpqfISSFSILSI-------FIGAIGGLNQTSLR 171
Cdd:PRK12650 221 KSAQFPFHFWLPEAMaaiTPVSAFLHAAAVVKAGIYLLLRFSPVFHD---VAVWNWLLIivgmitaLMGAVFAVQKTDLK 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 172 QIMVYSSISHLGWLIGSMMVSeTLWELYFTIYSTLSSImilLFnQSNLFII----------NQMFMLSSY--SMEYKFI- 238
Cdd:PRK12650 298 KLTAYSTVSQLGWIVATIGVG-TPFALTAAVVHTLAHA---LF-KSSLFMLigvvdhqagtRDIRRLGSLwrRMPFTFVs 372
|
170 180
....*....|....*....|
gi 304322839 239 MILSMMSLGGLPPFLGFLPK 258
Cdd:PRK12650 373 VTIAALSMAAVPPLFGFVSK 392
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
153-279 |
5.06e-04 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 41.86 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 153 SILSIFIGAIGGLNQTSLRQIMVYSSISHLGWLIGSMMVSeTLWELYFTIYSTLSSI--MILLFnqsnlFIINQMFMLSS 230
Cdd:PRK12663 279 AAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFYLVHDMvvKTALF-----LIAGSLVRLTG 352
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 304322839 231 YSmEYK----------------FIMILSMmslGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVI 279
Cdd:PRK12663 353 YR-SLQylgglyrkeplfgalfLILIFAI---GGLPPFSGFWGKVLLVQGALDNGAYILLALMLI 413
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
102-333 |
7.04e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 41.19 E-value: 7.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 102 KTGAAPFQFWFPEVMK--PSSWINCLIVMTwqKIA--------LMMVMSYCIENPQFI-SSFSILSIFIGAIGGLNQTSL 170
Cdd:PRK02504 223 KISAVPFHQWTPDVYEgsPTPVVAFLSVGS--KAAgfalairlLVTAFPSFDEQWKLLfTALAILSMVLGNVVALAQTSM 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 171 RQIMVYSSISHLGW-LIGSMMVSETLWElyftiySTLSSIMILLFNQSNLFIINQMFML-------SSYSMEYK---FIM 239
Cdd:PRK02504 301 KRMLAYSSIGQAGFvMIGLVAGTEAGYA------SMVFYLLAYLFMNLGAFACVILFSLrtgtdqiSDYAGLYQkdpLLT 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 240 I---LSMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYYY------MQMK----FSSIILNNKETPWS 306
Cdd:PRK02504 375 LglsLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYirvikmMVVKepqeMSDVVKNYPEINWN 454
|
250 260
....*....|....*....|....*...
gi 304322839 307 MD-IQTWKFKIIlpmmvmisnLCLISTS 333
Cdd:PRK02504 455 LPgMRPLRVGLV---------LCVIATA 473
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
155-287 |
9.15e-04 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 41.14 E-value: 9.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322839 155 LSIFIGAIGGLNQTSLRQIMVYSSISHLGWL---IGSMMVSETLWELYFTIYSTLSSIMILL-----FNQSNLFIINQMF 226
Cdd:PRK08668 281 ISIIVGTLMAILQEDIKKLIAYSSVANGGYIlvgLGLGTSLGFAGGLFHVFNHALFKGLFFLifaavIYRTGTTKISEMG 360
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 304322839 227 MLSsYSMEYKFIMIL-SMMSLGGLPPFLGFLPKWLIIQLTVENSMTLMISTMVILTAINFYY 287
Cdd:PRK08668 361 GLI-EKMPFTFAMYLvAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLY 421
|
|
| |
