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Conserved domains on  [gi|304322863|ref|YP_003856705|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Mekongiella xizangensis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 11-173 6.24e-35

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.91  E-value: 6.24e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322863  11 NLMNINFMKMNHPMSIMMTIIIQTLFISMMTGTMMESFWLSYILLLTFLGGMMVLFIYITSIASNELFNFNSNNMFTNIT 90
Cdd:MTH00166   9 LILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322863  91 TVMIMFTIISSNEYLMmtdifknkdtdMMKLSIDILEMSPSLTKLYNYPSFLITLMMMIYLFLALLVMVKITNINQGPIR 170
Cdd:MTH00166  89 MLLLMLNNFIKNSEMS-----------NFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLR 157


                 ...
gi 304322863 171 KLN 173
Cdd:MTH00166 158 SKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 11-173 6.24e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.91  E-value: 6.24e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322863  11 NLMNINFMKMNHPMSIMMTIIIQTLFISMMTGTMMESFWLSYILLLTFLGGMMVLFIYITSIASNELFNFNSNNMFTNIT 90
Cdd:MTH00166   9 LILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322863  91 TVMIMFTIISSNEYLMmtdifknkdtdMMKLSIDILEMSPSLTKLYNYPSFLITLMMMIYLFLALLVMVKITNINQGPIR 170
Cdd:MTH00166  89 MLLLMLNNFIKNSEMS-----------NFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLR 157


                 ...
gi 304322863 171 KLN 173
Cdd:MTH00166 158 SKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 11-173 6.24e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 119.91  E-value: 6.24e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322863  11 NLMNINFMKMNHPMSIMMTIIIQTLFISMMTGTMMESFWLSYILLLTFLGGMMVLFIYITSIASNELFNFNSNNMFTNIT 90
Cdd:MTH00166   9 LILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322863  91 TVMIMFTIISSNEYLMmtdifknkdtdMMKLSIDILEMSPSLTKLYNYPSFLITLMMMIYLFLALLVMVKITNINQGPIR 170
Cdd:MTH00166  89 MLLLMLNNFIKNSEMS-----------NFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLR 157


                 ...
gi 304322863 171 KLN 173
Cdd:MTH00166 158 SKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 17-171 3.09e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 47.69  E-value: 3.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322863  17 FMKMNHPMSIMMTIIIQTLFISMMTgTMMESFWLSYILLLTFLGGMMVLFIYITSIASNELFNFNSNNMFTNITTVMIMF 96
Cdd:MTH00212  17 FPLSAHPLTLGVSLLLSSLLSCLII-TMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFKKYFKGFGMILISLNL 95

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 304322863  97 TIISSNEYLMMTDIFKNkdtdmmklsidiLEMSPSLTKLYNYPSFLITLMMMIYLFLALLVMVKITNINQGPIRK 171
Cdd:MTH00212  96 YLLLMTLGSSNFSPMLN------------LKLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 17-170 3.13e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 47.57  E-value: 3.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322863  17 FMKMNHPMSIMMTIIIQTLFISMMTGtMMESFWLSYILLLTFLGGMMVLFIYITSIASNELFNFNSNNMFTNITTVMIMF 96
Cdd:MTH00152  17 LPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNFKFVFFSLTLFGFLG 95

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 304322863  97 TIISSNEYLMMTDIfknkdtDMMKLSIDILEMSPSLTKLYNYPSFLITLMMMIYLFLALLVMVKITNINQGPIR 170
Cdd:MTH00152  96 LFFFFLYLYSSGGL------SLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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