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Conserved domains on  [gi|306960102|ref|YP_003875519|]
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cytochrome b (mitochondrion) [Ellipes minuta]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 686.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  14 IVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFI 93
Cdd:MTH00156   3 IINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  94 CLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDN 173
Cdd:MTH00156  83 CIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 174 ATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTALSLVNPYLLGD 253
Cdd:MTH00156 163 ATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGD 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 254 PDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQIILWTLMMTA 333
Cdd:MTH00156 243 PENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIV 322

                        330       340       350
                 ....*....|....*....|....*....|....
gi 306960102 334 LLLTWIGARPVEDPYILTGQILTVIYFSLFIINP 367
Cdd:MTH00156 323 ILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 686.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  14 IVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFI 93
Cdd:MTH00156   3 IINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  94 CLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDN 173
Cdd:MTH00156  83 CIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 174 ATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTALSLVNPYLLGD 253
Cdd:MTH00156 163 ATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGD 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 254 PDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQIILWTLMMTA 333
Cdd:MTH00156 243 PENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIV 322

                        330       340       350
                 ....*....|....*....|....*....|....
gi 306960102 334 LLLTWIGARPVEDPYILTGQILTVIYFSLFIINP 367
Cdd:MTH00156 323 ILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-365 3.25e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 373.74  E-value: 3.25e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  17 NSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFICLY 96
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  97 LHVGRGLYFGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDNA 174
Cdd:COG1290  105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 175 TLTRFFTLH-FLLPFIIAALTIIHLFFLHQTGSNNPLGV----NSSTDKIPFHPYFSLKDSITFILMLFLLTALSLVNPy 249
Cdd:COG1290  185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 250 lLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQIILW 327
Cdd:COG1290  264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 306960102 328 TLMMTALLLTWIGARPveDPYILTGQILTVIYFSLFII 365
Cdd:COG1290  343 AFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.92e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.31  E-value: 2.92e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  10 PLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  90 FFFICLYLHVGRGLYFGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 306960102 168 GFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.30e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.44  E-value: 5.30e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   19 LIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   99 VGRGLYFGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 306960102  177 TRFFTLHFLLPFIIAALTIIHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 239-341 7.56e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.20  E-value: 7.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  239 LLTALSLVNPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFY-NSSKFQSTQ 317
Cdd:TIGR01156  50 CVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPF 124

                          90       100
                  ....*....|....*....|....
gi 306960102  318 FYPVNQIIlwtLMMTALLLTWIGA 341
Cdd:TIGR01156 125 RRPVATTV---FLFGTVVALWLGI 145
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 686.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  14 IVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFI 93
Cdd:MTH00156   3 IINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  94 CLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDN 173
Cdd:MTH00156  83 CIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 174 ATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTALSLVNPYLLGD 253
Cdd:MTH00156 163 ATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGD 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 254 PDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQIILWTLMMTA 333
Cdd:MTH00156 243 PENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIV 322

                        330       340       350
                 ....*....|....*....|....*....|....
gi 306960102 334 LLLTWIGARPVEDPYILTGQILTVIYFSLFIINP 367
Cdd:MTH00156 323 ILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 627.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   1 MNKPLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLL 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  81 RSIHANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTL 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 161 LVQWIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 241 TALSLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 306960102 321 VNQIILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFIINPSMSNAWDYLI 377
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00119
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 617.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   1 MNKPLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLL 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  81 RSIHANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTL 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 161 LVQWIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 241 TALSLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 306960102 321 VNQIILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFS-LFIINPSMS 370
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLLG 371
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 613.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   5 LRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  85 ANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 165 IWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTALS 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 245 LVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 306960102 325 ILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 606.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   5 LRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIH 84
Cdd:MTH00131   4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  85 ANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQW 164
Cdd:MTH00131  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 165 IWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTALS 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 245 LVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQI 324
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 306960102 325 ILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00131 324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 601.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   1 MNKPLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLL 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  81 RSIHANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTL 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 161 LVQWIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 241 TALSLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 306960102 321 VNQIILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFIINPSMSNAWDYLIK 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00074
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 597.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   1 MNKPLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLL 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  81 RSIHANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTL 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 161 LVQWIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 241 TALSLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 306960102 321 VNQIILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFII 365
CYTB MTH00100
cytochrome b; Provisional
 4-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 590.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   4 PLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSI 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  84 HANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQ 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 164 WIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTAL 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 244 SLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 306960102 324 IILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00034
cytochrome b; Validated
 4-365 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 568.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   4 PLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSI 83
Cdd:MTH00034   3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  84 HANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQ 163
Cdd:MTH00034  83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 164 WIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTAL 243
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 244 SLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQ 323
Cdd:MTH00034 243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 306960102 324 IILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00034 323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 515.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   1 MNKPLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLL 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  81 RSIHANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTL 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 161 LVQWIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 241 TALSLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 306960102 321 VNQIILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFIINPSMSNAWDYLIKT 379
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLNA 379
CYTB MTH00022
cytochrome b; Validated
 4-365 9.22e-176

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 493.83  E-value: 9.22e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   4 PLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSI 83
Cdd:MTH00022   2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  84 HANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQ 163
Cdd:MTH00022  82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 164 WIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTAL 243
Cdd:MTH00022 162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 244 SLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQ 323
Cdd:MTH00022 242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 306960102 324 IILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00022 322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-365 6.69e-173

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 486.91  E-value: 6.69e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   1 MNKPLRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLL 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  81 RSIHANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTL 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 161 LVQWIWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 241 TALSLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 306960102 321 VNQIILWTLMMTALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 5-365 1.18e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 389.68  E-value: 1.18e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   5 LRIKHPLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIH 84
Cdd:MTH00033   1 MRLRKTGLLEPVNDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  85 ANGASFFFICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQW 164
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 165 IWGGFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFiLMLFLLTALS 244
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGF-LILFGVFVII 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 245 LVNPY---LLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPV 321
Cdd:MTH00033 240 GIEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPT 319

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 306960102 322 NQIILWTLMMTALLLTWIGARPV-EDPYILTGQILTVIYFSLFII 365
Cdd:MTH00033 320 GKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 13-365 2.19e-129

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 375.43  E-value: 2.19e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  13 LIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  93 ICLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 173 NATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITfILMLFLLTALSLVNPYLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 253 DPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSkfqSTQFYPVNQIILWTLMMT 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 306960102 333 ALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-365 3.25e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 373.74  E-value: 3.25e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  17 NSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFICLY 96
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  97 LHVGRGLYFGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDNA 174
Cdd:COG1290  105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 175 TLTRFFTLH-FLLPFIIAALTIIHLFFLHQTGSNNPLGV----NSSTDKIPFHPYFSLKDSITFILMLFLLTALSLVNPy 249
Cdd:COG1290  185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 250 lLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQIILW 327
Cdd:COG1290  264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 306960102 328 TLMMTALLLTWIGARPveDPYILTGQILTVIYFSLFII 365
Cdd:COG1290  343 AFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00046
cytochrome b; Validated
 14-365 2.58e-90

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 275.71  E-value: 2.58e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  14 IVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFI 93
Cdd:MTH00046   4 LIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  94 CLYLHVGRGLYFGSYRYTHTWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDN 173
Cdd:MTH00046  84 LLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 174 ATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSNNPLGV-NSSTDKIPFHPYFSLKDSITFILMLFLLTALSLVNPYLLG 252
Cdd:MTH00046 164 VTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 253 DPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGviaLVLSIAILFIMPFYNSSKfqSTQFYPVNQIILWTLMMT 332
Cdd:MTH00046 244 DIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVLVLSFLFFLWVPTFNG--SSVYSVWRQVNFWLIVSL 318

                        330       340       350
                 ....*....|....*....|....*....|...
gi 306960102 333 ALLLTWIGARPVEDPYILTGQILTVIYFSLFII 365
Cdd:MTH00046 319 FFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.92e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 267.31  E-value: 2.92e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  10 PLFLIVNNSLIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  90 FFFICLYLHVGRGLYFGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 306960102 168 GFAVDNATLTRFFTLHFLLPFIIAALTIIHLFFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.30e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 243.44  E-value: 5.30e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   19 LIDLPAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   99 VGRGLYFGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 306960102  177 TRFFTLHFLLPFIIAALTIIHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 5.97e-50

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 165.49  E-value: 5.97e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102   89 SFFFICLYLHVGRGLYFGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  167 GGFAVDNATLTRFFTLHF-LLPFIIAALTIIHLFFLHQTGSNNPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTALSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 306960102  246 VNPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 3.50e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 157.42  E-value: 3.50e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 208 NPLGVNSSTDKIPFHPYFSLKDSITFILMLFLLTALSLVNPYLLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 306960102 288 KLGGVIALVLSIAILFIMPFYNSSKFQStQFYPVNQIILWTLMMTALLLTWIGARPVEDPYILTGQI 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 9.59e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 146.01  E-value: 9.59e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  23 PAPINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFICLYLHVGRG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 103 LYFGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDNATLTRFF 180
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|.
gi 306960102 181 TLH-FLLPFIIAALTIIHLFFLHQTGSNNPL 210
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 9.68e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 141.85  E-value: 9.68e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFYNSSKFQSTQFYPVNQIILWTLMMTALLLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 306960102  339 IGARPVEDPYILTGQILTVIY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 25-210 1.45e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.06  E-value: 1.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  25 PINISMWWNFGSLLGLCLMIQILTGIFLAMHYAADVNLAFSSVIHICRDVNYGWLLRSIHANGASFFFICLYLHVGRGLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 105 FGSYRYTH--TWLVGVLILFVVMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTLLVQWIWGGFAVDNATLTRFFTL 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 306960102 183 H-FLLPFIIAALTIIHLFFLHQTGSNNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 237-314 2.56e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.25  E-value: 2.56e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 306960102 237 LFLLTALSLVNPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFY-NSSKFQ 314
Cdd:CHL00058  48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQ 121
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 237-350 3.64e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.04  E-value: 3.64e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102 237 LFLLTALSLVNPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFY-NSSKFQS 315
Cdd:COG5679   49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQN 123

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 306960102 316 TQFYPVNQIILWTLMMTALLLTWIGARPVEDPYIL 350
Cdd:COG5679  124 PFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTL 158
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 239-341 7.56e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.20  E-value: 7.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960102  239 LLTALSLVNPYLLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFIMPFY-NSSKFQSTQ 317
Cdd:TIGR01156  50 CVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPF 124

                          90       100
                  ....*....|....*....|....
gi 306960102  318 FYPVNQIIlwtLMMTALLLTWIGA 341
Cdd:TIGR01156 125 RRPVATTV---FLFGTVVALWLGI 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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