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Conserved domains on  [gi|306960161|ref|YP_003875575|]
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cytochrome b (mitochondrion) [Physemacris variolosa]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 645.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  12 IKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  92 FMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 172 DNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITLCLIKPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 252 GDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQIIFWIMIM 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 306960161 332 VVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 645.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  12 IKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  92 FMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 172 DNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITLCLIKPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 252 GDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQIIFWIMIM 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 306960161 332 VVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-364 2.48e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 346.01  E-value: 2.48e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  12 IKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  92 FMCMYLHVGRGLYYGSFmftK-----TWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIW 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 167 GGFAVDNATLNRFFTLHFM-MPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEK----IPFHPYLSFKDLITLIMATSMLI 241
Cdd:COG1290  177 GGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFA 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 242 TLCLIKPylLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIP--NKLGGVIALFISIMILMIMPFHNKTLFKGLQFY 319
Cdd:COG1290  257 LLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 306960161 320 PINQIIFWIMIMVVMLLTWIGKRPveEPYMITGQMLTVMYFLYFI 364
Cdd:COG1290  335 PVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 11-207 1.00e-85

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 258.45  E-value: 1.00e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  11 LIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASM 90
Cdd:cd00284    2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  91 FFMCMYLHVGRGLYYGSFMFT--KTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGG 168
Cdd:cd00284   82 FFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGG 161

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 306960161 169 FAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSN 207
Cdd:cd00284  162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.38e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 234.58  E-value: 1.38e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   19 IIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMFFMCMYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   99 VGRGLYYGSF--MFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 306960161  177 NRFFTLHFMMPFIIMVLSMMHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 231-340 3.42e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  231 ITLIMATSMLITLCLIKPYLLGDPdnwipANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPF-HN 309
Cdd:TIGR01156  42 VVILGTIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFiEN 116

                          90       100       110
                  ....*....|....*....|....*....|.
gi 306960161  310 KTLFKGLQFYPINQIIFWIMIMVVMlltWIG 340
Cdd:TIGR01156 117 VNKFQNPFRRPVATTVFLFGTVVAL---WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 645.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  12 IKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  92 FMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 172 DNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITLCLIKPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 252 GDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQIIFWIMIM 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 306960161 332 VVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 582.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   1 MNKPFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWIN 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  81 RTMHANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSM 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 161 LVQWIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSML 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 241 ITLCLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 306960161 321 INQIIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMNIHISNIWNMLIYK 379
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILDY 379
CYTB MTH00119
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 569.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   1 MNKPFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWIN 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  81 RTMHANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSM 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 161 LVQWIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSML 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 241 ITLCLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 321 INQIIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYF-LYFIMNIHISNIWNMLIYK 379
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFtILLILFPLLGALENKMLNY 380
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 563.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   5 FRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  85 ANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 165 IWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITLC 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 245 LIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 306960161 325 IFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIM 365
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 4-372 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 558.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   4 PFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTM 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  84 HANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQ 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 164 WIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITL 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 244 CLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 306960161 324 IIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMNIHISNI 372
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASL 371
CYTB MTH00131
cytochrome b; Provisional
 6-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 555.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   6 RINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHA 85
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  86 NGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWI 165
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 166 WGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITLCL 245
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLAL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 246 IKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQII 325
Cdd:MTH00131 245 FSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFL 324

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 306960161 326 FWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFI 364
Cdd:MTH00131 325 FWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 555.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   1 MNKPFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWIN 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  81 RTMHANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSM 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 161 LVQWIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSML 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 241 ITLCLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 306960161 321 INQIIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMNIHISNIWNMLIY 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00074
cytochrome b; Provisional
 1-373 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 547.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   1 MNKPFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWIN 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  81 RTMHANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSM 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 161 LVQWIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSML 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 241 ITLCLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 306960161 321 INQIIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMNIHISNIW 373
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWL 373
CYTB MTH00034
cytochrome b; Validated
 4-378 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 516.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   4 PFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTM 83
Cdd:MTH00034   3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  84 HANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQ 163
Cdd:MTH00034  83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 164 WIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITL 243
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 244 CLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQ 323
Cdd:MTH00034 243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 306960161 324 IIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMNIH-ISNIWNMLIY 378
Cdd:MTH00034 323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPlISYLENKLIF 378
CYTB MTH00224
cytochrome b; Provisional
 1-377 9.64e-178

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 499.06  E-value: 9.64e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   1 MNKPFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWIN 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  81 RTMHANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSM 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 161 LVQWIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSML 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 241 ITLCLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 306960161 321 INQIIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMNIHISNIWNMLI 377
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 4-367 3.05e-167

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 472.26  E-value: 3.05e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   4 PFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTM 83
Cdd:MTH00022   2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  84 HANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQ 163
Cdd:MTH00022  82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 164 WIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITL 243
Cdd:MTH00022 162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 244 CLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQ 323
Cdd:MTH00022 242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 306960161 324 IIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIMNI 367
Cdd:MTH00022 322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00053
cytochrome b; Provisional
 1-365 2.18e-164

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 465.33  E-value: 2.18e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   1 MNKPFRINQQLIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWIN 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  81 RTMHANGASMFFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSM 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 161 LVQWIWGGFAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSML 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 241 ITLCLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 306960161 321 INQIIFWIMIMVVMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIM 365
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 17-379 1.12e-128

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 374.66  E-value: 1.12e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  17 NSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMFFMCMY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  97 LHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAVDNATL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 177 NRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITLClIKPY---LLGD 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 254 PDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQIIFWIMIMVV 333
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 306960161 334 MLLTWIGKRPV-EEPYMITGQMLTVMYFLYFIMNIHISNIWNMLIYK 379
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYE 378
CYTB MTH00086
cytochrome b; Provisional
 13-365 3.01e-122

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 357.33  E-value: 3.01e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  13 KILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  93 MCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 173 NATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATsMLITLCLIKPYLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 253 DPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNktlFKGLQFYPINQIIFWIMIMV 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 306960161 333 VMLLTWIGKRPVEEPYMITGQMLTVMYFLYFIM 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-364 2.48e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 346.01  E-value: 2.48e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  12 IKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  92 FMCMYLHVGRGLYYGSFmftK-----TWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIW 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 167 GGFAVDNATLNRFFTLHFM-MPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEK----IPFHPYLSFKDLITLIMATSMLI 241
Cdd:COG1290  177 GGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFA 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 242 TLCLIKPylLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIP--NKLGGVIALFISIMILMIMPFHNKTLFKGLQFY 319
Cdd:COG1290  257 LLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 306960161 320 PINQIIFWIMIMVVMLLTWIGKRPveEPYMITGQMLTVMYFLYFI 364
Cdd:COG1290  335 PVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 11-207 1.00e-85

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 258.45  E-value: 1.00e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  11 LIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASM 90
Cdd:cd00284    2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  91 FFMCMYLHVGRGLYYGSFMFT--KTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGG 168
Cdd:cd00284   82 FFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGG 161

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 306960161 169 FAVDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSN 207
Cdd:cd00284  162 FSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-364 6.00e-80

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 249.13  E-value: 6.00e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  11 LIKILNNSIIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASM 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  91 FFMCMYLHVGRGLYYGSFMFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFA 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 171 VDNATLNRFFTLHFMMPFIIMVLSMMHLFFLHQTGSNNPLGV-NSNTEKIPFHPYLSFKDLITLIMATSMLITLCLIKPY 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 250 LLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIaLFISIMILMIMPFHNKTLFKGLqfypINQIIFWIM 329
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 306960161 330 IMVVMLLTWIGKRPVEEPYMITGQMLTV-MYFLYFI 364
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVlMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.38e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 234.58  E-value: 1.38e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   19 IIDLPTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMFFMCMYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   99 VGRGLYYGSF--MFTKTWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 306960161  177 NRFFTLHFMMPFIIMVLSMMHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 1.08e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 153.57  E-value: 1.08e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 208 NPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITLCLIKPYLLGDPDNWIPANPLVTPTHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 306960161 288 KLGGVIALFISIMILMIMPFHNKTLFKGlQFYPINQIIFWIMIMVVMLLTWIGKRPVEEPYMITGQM 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 4.39e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.08  E-value: 4.39e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161   89 SMFFMCMYLHVGRGLYYGSFMFTK--TWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  167 GGFAVDNATLNRFFTLHFM-MPFIIMVLSMMHLFFLHQTGSNNPLGVNSNTEKIPFHPYLSFKDLITLIMATSMLITLCL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 306960161  246 IKPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.77e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 135.68  E-value: 1.77e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  259 PANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPFHNKTLFKGLQFYPINQIIFWIMIMVVMLLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 306960161  339 IGKRPVEEPYMITGQMLTVMY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 2.73e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 136.77  E-value: 2.73e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  23 PTPTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMFFMCMYLHVGRG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 103 LYYGSFMFTK--TWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAVDNATLNRFF 180
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|.
gi 306960161 181 TLH-FMMPFIIMVLSMMHLFFLHQTGSNNPL 210
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 1.64e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.06  E-value: 1.64e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  25 PTNISFWWNFGSLLGLCLMIQVITGLFLSMHYTPNIENAFESIIHICRNVNNGWINRTMHANGASMFFMCMYLHVGRGLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 105 YGSFMFTK--TWIMGTIILMTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGSMLVQWIWGGFAVDNATLNRFFTL 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 306960161 183 H-FMMPFIIMVLSMMHLFFLHQTGSNNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 209-346 5.06e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.58  E-value: 5.06e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 209 PLGVNSNTEKIPFHPYLSFKDLITLIMATSMLIT-LCLIKPYLLGDPdnwipANPLVTPTHIQPEWYFLFAYAILRSIPN 287
Cdd:COG5679   20 EKGMGHNYYGEPAWPNDLLYIFPVVILGTIALCIgLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPN 94

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161 288 KLGGVIALFISIMILMIMPF-HNKTLFKGLQFYPINQIIFWIMIMVVMLLTWIGKRPVEE 346
Cdd:COG5679   95 KLLGIVMMAAIPLGLMLVPFiENVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDK 154
petD CHL00058
cytochrome b6/f complex subunit IV
 240-307 1.35e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.55  E-value: 1.35e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 306960161 240 LITLCLIKPYLLGDPdnwipANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPF 307
Cdd:CHL00058  51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPF 113
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 231-340 3.42e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960161  231 ITLIMATSMLITLCLIKPYLLGDPdnwipANPLVTPTHIQPEWYFLFAYAILRSIPNKLGGVIALFISIMILMIMPF-HN 309
Cdd:TIGR01156  42 VVILGTIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFiEN 116

                          90       100       110
                  ....*....|....*....|....*....|.
gi 306960161  310 KTLFKGLQFYPINQIIFWIMIMVVMlltWIG 340
Cdd:TIGR01156 117 VNKFQNPFRRPVATTVFLFGTVVAL---WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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