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Conserved domains on  [gi|325171283|ref|YP_004251254|]
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RNA polymerase inhibitor [Vibrio phage ICP3]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNA_pol_inhib pfam16857
RNA polymerase inhibitor; This bacteriophage protein inhibits the bacterial host RNA ...
 4-48 4.98e-10

RNA polymerase inhibitor; This bacteriophage protein inhibits the bacterial host RNA polymerase by interacting with the RpoC subunit and inhibiting the formation of a promoter complex.


:

Pssm-ID: 435606  Cd Length: 47  Bit Score: 48.54  E-value: 4.98e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 325171283   4 KKYIVHIQLVDTEMEVPVFAEDIGQAAEWAEEAYESQGYKVNRIR 48
Cdd:pfam16857  1 KKFIATVEGRGTSFEVPVYAESLDEALEVAEEEYEEAGFAVTRVR 45
 
Name Accession Description Interval E-value
RNA_pol_inhib pfam16857
RNA polymerase inhibitor; This bacteriophage protein inhibits the bacterial host RNA ...
 4-48 4.98e-10

RNA polymerase inhibitor; This bacteriophage protein inhibits the bacterial host RNA polymerase by interacting with the RpoC subunit and inhibiting the formation of a promoter complex.


Pssm-ID: 435606  Cd Length: 47  Bit Score: 48.54  E-value: 4.98e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 325171283   4 KKYIVHIQLVDTEMEVPVFAEDIGQAAEWAEEAYESQGYKVNRIR 48
Cdd:pfam16857  1 KKFIATVEGRGTSFEVPVYAESLDEALEVAEEEYEEAGFAVTRVR 45
PHA00457 PHA00457
inhibitor of host bacterial RNA polymerase
 2-51 3.82e-05

inhibitor of host bacterial RNA polymerase


Pssm-ID: 222799  Cd Length: 63  Bit Score: 36.83  E-value: 3.82e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 325171283  2 RNKKYIVHIQLVDTEMEVPVFAEDIGQAAEWAEEAYESQGYKVNRIREAR 51
Cdd:PHA00457 12 GEKKFIATVEGSGQSFEVPVYAKSLEEATELAEWQYVPAGFVVTRIRPEV 61
 
Name Accession Description Interval E-value
RNA_pol_inhib pfam16857
RNA polymerase inhibitor; This bacteriophage protein inhibits the bacterial host RNA ...
 4-48 4.98e-10

RNA polymerase inhibitor; This bacteriophage protein inhibits the bacterial host RNA polymerase by interacting with the RpoC subunit and inhibiting the formation of a promoter complex.


Pssm-ID: 435606  Cd Length: 47  Bit Score: 48.54  E-value: 4.98e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 325171283   4 KKYIVHIQLVDTEMEVPVFAEDIGQAAEWAEEAYESQGYKVNRIR 48
Cdd:pfam16857  1 KKFIATVEGRGTSFEVPVYAESLDEALEVAEEEYEEAGFAVTRVR 45
PHA00457 PHA00457
inhibitor of host bacterial RNA polymerase
 2-51 3.82e-05

inhibitor of host bacterial RNA polymerase


Pssm-ID: 222799  Cd Length: 63  Bit Score: 36.83  E-value: 3.82e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 325171283  2 RNKKYIVHIQLVDTEMEVPVFAEDIGQAAEWAEEAYESQGYKVNRIREAR 51
Cdd:PHA00457 12 GEKKFIATVEGSGQSFEVPVYAKSLEEATELAEWQYVPAGFVVTRIRPEV 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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