NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|333236171|ref|YP_004465003|]
View 

ATP synthase F0 subunit 6 (mitochondrion) [Brotogeris cyanoptera]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009577)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 2.11e-105

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177190  Cd Length: 227  Bit Score: 303.33  E-value: 2.11e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  81 LTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 333236171 161 LTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 2.11e-105

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 303.33  E-value: 2.11e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  81 LTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 333236171 161 LTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-227 1.60e-46

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 153.52  E-value: 1.60e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   19 LVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQ 98
Cdd:TIGR01131  20 LILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSH 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   99 LSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIQLISTA 178
Cdd:TIGR01131 100 LSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGL 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 333236171  179 TITLlpIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:TIGR01131 180 LFSL--MSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 2.03e-33

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 117.50  E-value: 2.03e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  66 GHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMI 145
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 333236171 146 ETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPImpaISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQ 224
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
36-224 1.58e-28

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 106.81  E-value: 1.58e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   36 NRWITNRLSTLQLWLINTITKQLMMPL-NKPGHKWAIILTSLMLFLL---TINLLGLLPYTFTPTTQLSMNMALAFPLWL 111
Cdd:pfam00119  23 KKLVPGRLQNFVEMLVEFVDNIVKDNIgKKKGRKFFPLLLTLFFFILvsnLLGLIPKSPGGFTVTADINVTLALALIVFL 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  112 ATLLTGLRNQPTTS-LGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPIMPAIS 190
Cdd:pfam00119 103 LVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLG 182

                         170       180       190
                  ....*....|....*....|....*....|....
gi 333236171  191 ILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQ 224
Cdd:pfam00119 183 VIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 49-225 2.73e-18

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 79.73  E-value: 2.73e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  49 WLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTS-LG 127
Cdd:COG0356   37 MLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLK 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171 128 HLLPEGTPtPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIqlistATITLLPIMPAISILTTTILLLLTILEVAV 207
Cdd:COG0356  117 HLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLV 190

                        170
                 ....*....|....*...
gi 333236171 208 AIIQAYVFVLLLSLYLQE 225
Cdd:COG0356  191 GFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 2.11e-105

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 303.33  E-value: 2.11e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  81 LTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 333236171 161 LTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 1.98e-103

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 298.28  E-value: 1.98e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFL 80
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  81 LTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVR 160
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 333236171 161 LTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-227 1.09e-99

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 288.79  E-value: 1.09e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFL 80
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  81 LTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVR 160
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 333236171 161 LTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 3.09e-78

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 234.46  E-value: 3.09e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFL 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  81 LTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVR 160
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 333236171 161 LTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQEN 226
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.04e-70

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 214.43  E-value: 2.04e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVLIsTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFL 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTL-IIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  81 LTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVR 160
Cdd:MTH00101  80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 333236171 161 LTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQEN 226
Cdd:MTH00101 160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDN 225
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-227 1.60e-46

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 153.52  E-value: 1.60e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   19 LVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQ 98
Cdd:TIGR01131  20 LILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSH 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   99 LSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIQLISTA 178
Cdd:TIGR01131 100 LSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGL 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 333236171  179 TITLlpIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:TIGR01131 180 LFSL--MSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 6-227 9.57e-44

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 146.66  E-value: 9.57e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   6 FDQFSTPYFLGIPLVLISTLTPTL-LLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTIN 84
Cdd:MTH00035   8 FGQFSPDTILFIPLTLLSSVIALSwLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILILSIN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  85 LLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTAN 164
Cdd:MTH00035  88 VLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLAAN 167

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 333236171 165 LTAGHLLIQLISTAtITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:MTH00035 168 LTAGHLLIFLLSTA-IWELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 39-225 4.67e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 136.84  E-value: 4.67e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  39 ITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGL 118
Cdd:MTH00157  38 IPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGW 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171 119 RNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPIMPAISiltTTILL 198
Cdd:MTH00157 118 INNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLLTLLGNTGPSLSSMILSIL---ILIQI 194

                        170       180
                 ....*....|....*....|....*..
gi 333236171 199 LLTILEVAVAIIQAYVFVLLLSLYLQE 225
Cdd:MTH00157 195 LLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 6.20e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 123.99  E-value: 6.20e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVLISTLTPTLLLPTPNNR-WITNRLSTLQLWLINTITKQLMMPLNKPGHK-WAIILTSLML 78
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSWITLLLFLLLMPSSvWFCPSKLQVFMLMFSTFLPEMILRSNGSYILgSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  79 FLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALG 158
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 333236171 159 VRLTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQEN 226
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEH 228
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 38-225 8.33e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 123.44  E-value: 8.33e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  38 WITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTG 117
Cdd:MTH00173  40 VSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSG 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171 118 LRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIQLI-STATITLLPIMPAISILTTTI 196
Cdd:MTH00173 120 LFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIgNYLSSSLFSSSVVSLLLVLLI 199

                        170       180
                 ....*....|....*....|....*....
gi 333236171 197 LLLLTILEVAVAIIQAYVFVLLLSLYLQE 225
Cdd:MTH00173 200 QVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 2.03e-33

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 117.50  E-value: 2.03e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  66 GHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMI 145
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 333236171 146 ETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPImpaISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQ 224
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 38-222 2.31e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 112.13  E-value: 2.31e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  38 WIT-NRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLT 116
Cdd:MTH00005  41 WITpNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMS 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171 117 GLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPIMPAISILTTTI 196
Cdd:MTH00005 121 SVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGIYAASALFSSISSTILLILT 200

                        170       180
                 ....*....|....*....|....*.
gi 333236171 197 LLLLTILEVAVAIIQAYVFVLLLSLY 222
Cdd:MTH00005 201 QMGYILFEVGICLIQAYIFCLLLSLY 226
ATP-synt_A pfam00119
ATP synthase A chain;
36-224 1.58e-28

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 106.81  E-value: 1.58e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   36 NRWITNRLSTLQLWLINTITKQLMMPL-NKPGHKWAIILTSLMLFLL---TINLLGLLPYTFTPTTQLSMNMALAFPLWL 111
Cdd:pfam00119  23 KKLVPGRLQNFVEMLVEFVDNIVKDNIgKKKGRKFFPLLLTLFFFILvsnLLGLIPKSPGGFTVTADINVTLALALIVFL 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  112 ATLLTGLRNQPTTS-LGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPIMPAIS 190
Cdd:pfam00119 103 LVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLG 182

                         170       180       190
                  ....*....|....*....|....*....|....
gi 333236171  191 ILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQ 224
Cdd:pfam00119 183 VIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-227 1.41e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 97.03  E-value: 1.41e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGI--PLVLISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLML 78
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLtnSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  79 FLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALG 158
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 333236171 159 VRLTANLTAGHLLIQLISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTI 229
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-227 2.06e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 96.61  E-value: 2.06e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171   1 MTLTFFDQFSTPYFLGIPLVL-------------ISTLTPTLLLPTPNNRWITNRLSTLQLWLINTITKQLMMPLNKPGH 67
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIQAFLgdwlvtftnssmmMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  68 KWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIET 147
Cdd:MTH00175  81 KYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIET 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171 148 ISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPI-MPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQEN 226
Cdd:MTH00175 161 LSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNgLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGDT 240


                 .
gi 333236171 227 I 227
Cdd:MTH00175 241 I 241
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 49-225 2.73e-18

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 79.73  E-value: 2.73e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  49 WLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTS-LG 127
Cdd:COG0356   37 MLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLK 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171 128 HLLPEGTPtPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIqlistATITLLPIMPAISILTTTILLLLTILEVAV 207
Cdd:COG0356  117 HLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLV 190

                        170
                 ....*....|....*...
gi 333236171 208 AIIQAYVFVLLLSLYLQE 225
Cdd:COG0356  191 GFLQAYIFTMLTAVYISL 208
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 35-227 5.30e-16

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 74.59  E-value: 5.30e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  35 NNRWITNRLSTLQLWLINTITKQLMMPLNKPGHKWAIILTSLMLFLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATL 114
Cdd:MTH00174  56 NNTLVPNRILVGLELIYSHFYTVLKDNLGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTT 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171 115 LTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPIMPAI-SILT 193
Cdd:MTH00174 136 LAGLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVP 215

                        170       180       190
                 ....*....|....*....|....*....|....
gi 333236171 194 TTILLLLTILEVAVAIIQAYVFVLLLSLYLQENI 227
Cdd:MTH00174 216 FAILIFVTILEMAVAIIQAYVFTLLTIVYLRDTV 249
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 64-225 2.39e-15

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 72.13  E-value: 2.39e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  64 KPGHKWAIILTSLMLFLLTINLLGLLP-YTFTPTTQLSMNMALAFPLWLATLLTGLRNQpttSLGHLLPEGTPTPlIPAL 142
Cdd:PRK05815  67 GKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLL 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171 143 IMIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLLPIMPAisilTTTILLLLTILEVAVAIIQAYVFVLLLSLY 222
Cdd:PRK05815 143 LPIEIISEFSRPISLSLRLFGNMLAGELILALIALLGGAGLLLALA----PLILPVAWTIFEIFVGTLQAYIFMMLTIVY 218


                 ...
gi 333236171 223 LQE 225
Cdd:PRK05815 219 ISM 221
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 90-225 1.09e-10

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 58.84  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  90 PYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSlgHLLPEGTPTPLIP-ALIMIETISLFIRPLALGVRLTANLTAG 168
Cdd:MTH00087  72 PYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTfSMLFVEIVSELSRPLALTLRLTVNLMVG 149

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 333236171 169 HLLIQLISTatitllpimpaISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYLQE 225
Cdd:MTH00087 150 HLISSLLNF-----------LGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 90-223 9.84e-10

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 57.45  E-value: 9.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  90 PYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETISLFIRPLALGVRLTANLTAGH 169
Cdd:PRK13419 191 PYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHWSLWIIMIPIEFIGLFTKPFALTVRLFANMTAGH 270

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 333236171 170 LLI-QLISTATITLLPIM-PAISiltTTILLLLTILEVAVAIIQAYVFVLLLSLYL 223
Cdd:PRK13419 271 IVIlSLIFISFILKSYIVaVAVS---VPFAIFIYLLELFVAFLQAYIFTMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 1.61e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 53.74  E-value: 1.61e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 333236171  94 TPTTQLSMNMALAFPLWLATLLTGLRNQPTTSLGHLLPEGTPTPLIPALIMIETI-SLFIRPLALGVRLTANLTAGHLLI 172
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 333236171 173 qlISTATITLLPIMPAISILTTTILLLLTILEVAVAIIQAYVFVLLLSLYL 223
Cdd:PRK13417 297 --LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH