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Conserved domains on  [gi|387600896|ref|YP_006331071|]
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movement protein [Maize streak Reunion virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gemini_mov super family cl03325
Geminivirus putative movement protein; This family consists of putative movement proteins from ...
 1-84 2.22e-22

Geminivirus putative movement protein; This family consists of putative movement proteins from Maize streak and wheat dwarf virus.


The actual alignment was detected with superfamily member pfam01708:

Pssm-ID: 366768  Cd Length: 92  Bit Score: 82.88  E-value: 2.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600896    1 MEaPSTLQVYPQPLSLVTQSP----PAPTAGD-PWFRVVFVLVIALICLGIVYLSYRWFIRDVIILLRAKRQRSTEYIGF 75
Cdd:pfam01708   1 MD-QAGYAPPPSPQNYLYQTPrvptAAPSSSDlPWSRVGEIAIFTLVAVGVLYLLYTWVLKDLILVLKAKRGRSTEELGF 79


                  ....*....
gi 387600896   76 GNTPARADG 84
Cdd:pfam01708  80 GPTPARSSG 88
 
Name Accession Description Interval E-value
Gemini_mov pfam01708
Geminivirus putative movement protein; This family consists of putative movement proteins from ...
 1-84 2.22e-22

Geminivirus putative movement protein; This family consists of putative movement proteins from Maize streak and wheat dwarf virus.


Pssm-ID: 366768  Cd Length: 92  Bit Score: 82.88  E-value: 2.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600896    1 MEaPSTLQVYPQPLSLVTQSP----PAPTAGD-PWFRVVFVLVIALICLGIVYLSYRWFIRDVIILLRAKRQRSTEYIGF 75
Cdd:pfam01708   1 MD-QAGYAPPPSPQNYLYQTPrvptAAPSSSDlPWSRVGEIAIFTLVAVGVLYLLYTWVLKDLILVLKAKRGRSTEELGF 79


                  ....*....
gi 387600896   76 GNTPARADG 84
Cdd:pfam01708  80 GPTPARSSG 88
 
Name Accession Description Interval E-value
Gemini_mov pfam01708
Geminivirus putative movement protein; This family consists of putative movement proteins from ...
 1-84 2.22e-22

Geminivirus putative movement protein; This family consists of putative movement proteins from Maize streak and wheat dwarf virus.


Pssm-ID: 366768  Cd Length: 92  Bit Score: 82.88  E-value: 2.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600896    1 MEaPSTLQVYPQPLSLVTQSP----PAPTAGD-PWFRVVFVLVIALICLGIVYLSYRWFIRDVIILLRAKRQRSTEYIGF 75
Cdd:pfam01708   1 MD-QAGYAPPPSPQNYLYQTPrvptAAPSSSDlPWSRVGEIAIFTLVAVGVLYLLYTWVLKDLILVLKAKRGRSTEELGF 79


                  ....*....
gi 387600896   76 GNTPARADG 84
Cdd:pfam01708  80 GPTPARSSG 88
MitoNEET_N pfam10660
Iron-containing outer mitochondrial membrane protein N-terminus; MitoNEET_N is the N-terminal ...
 1-54 9.98e-03

Iron-containing outer mitochondrial membrane protein N-terminus; MitoNEET_N is the N-terminal region of the MitoNEET and Miner-type proteins that carry a zf-CDGSH, pfam09360, redox-active 2Fe-2S cluster. The whole protein regulates oxidative capacity. The domain is an anchor sequence that tethers the protein to the outer membrane.


Pssm-ID: 313801  Cd Length: 64  Bit Score: 31.88  E-value: 9.98e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 387600896    1 MEAPSTLQVYPQPLSLvtQSPPAPTAGDPWFRVVFVLVIALICL-----GIVYLSYRWF 54
Cdd:pfam10660   1 MESLSRVVKSSLPNYL--RSLPIPKSFGGIFRLSFKDWLALVPFaavtaALGYLAYKAF 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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