NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|387600898|ref|YP_006331074|]
View 

RepA [Maize streak Reunion virus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Gemini_AL1 super family cl02967
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 50-157 8.88e-33

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


The actual alignment was detected with superfamily member pfam00799:

Pssm-ID: 366313  Cd Length: 113  Bit Score: 117.26  E-value: 8.88e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600898   50 FQFKSANAFLTYPRCLLTPFEAGQHLWEVARPWTPSYILASSESHQDGTPHLHVLLQTIRPMSTRDPGFFDIQG------ 123
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEALTQIQKLQTNTNKKYIKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSptrsah 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 387600898  124 YHPNIQASRSPNKTREYILKSPITVySRGTFIPR 157
Cdd:pfam00799  81 FHPNIQGAKSSSDVRSYVDKDGDTI-EWGTFQID 113
Gemini_AL1_M super family cl07042
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 171-276 6.24e-16

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


The actual alignment was detected with superfamily member pfam08283:

Pssm-ID: 285483  Cd Length: 107  Bit Score: 72.25  E-value: 6.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600898  171 PKRNEIMRGIIETTtSKAEYLSEVQKAFPFEWATKLQQFEYSAERLFPTLPSPFVPPHPPSEPDLTCyETIRSWKDENIF 250
Cdd:pfam08283   4 TAKDEYAKAIINAT-SKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPPFPLSSFTNLP-EEMQDWVDDYFG 81

                          90       100
                  ....*....|....*....|....*.
gi 387600898  251 QVHPYIYMLEHPHCQSVEQAAESLKW 276
Cdd:pfam08283  82 VVSAARPMRPKSIIVEGESRTGKTMW 107
 
Name Accession Description Interval E-value
Gemini_AL1 pfam00799
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 50-157 8.88e-33

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


Pssm-ID: 366313  Cd Length: 113  Bit Score: 117.26  E-value: 8.88e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600898   50 FQFKSANAFLTYPRCLLTPFEAGQHLWEVARPWTPSYILASSESHQDGTPHLHVLLQTIRPMSTRDPGFFDIQG------ 123
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEALTQIQKLQTNTNKKYIKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSptrsah 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 387600898  124 YHPNIQASRSPNKTREYILKSPITVySRGTFIPR 157
Cdd:pfam00799  81 FHPNIQGAKSSSDVRSYVDKDGDTI-EWGTFQID 113
Gemini_AL1_M pfam08283
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 171-276 6.24e-16

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


Pssm-ID: 285483  Cd Length: 107  Bit Score: 72.25  E-value: 6.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600898  171 PKRNEIMRGIIETTtSKAEYLSEVQKAFPFEWATKLQQFEYSAERLFPTLPSPFVPPHPPSEPDLTCyETIRSWKDENIF 250
Cdd:pfam08283   4 TAKDEYAKAIINAT-SKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPPFPLSSFTNLP-EEMQDWVDDYFG 81

                          90       100
                  ....*....|....*....|....*.
gi 387600898  251 QVHPYIYMLEHPHCQSVEQAAESLKW 276
Cdd:pfam08283  82 VVSAARPMRPKSIIVEGESRTGKTMW 107
 
Name Accession Description Interval E-value
Gemini_AL1 pfam00799
Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein ...
 50-157 8.88e-33

Geminivirus Rep catalytic domain; The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.


Pssm-ID: 366313  Cd Length: 113  Bit Score: 117.26  E-value: 8.88e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600898   50 FQFKSANAFLTYPRCLLTPFEAGQHLWEVARPWTPSYILASSESHQDGTPHLHVLLQTIRPMSTRDPGFFDIQG------ 123
Cdd:pfam00799   1 FRIQAKNIFLTYPQCSLSKEEALTQIQKLQTNTNKKYIKIARELHEDGEPHLHVLLQLEKKFRITDLRFFDIVSptrsah 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 387600898  124 YHPNIQASRSPNKTREYILKSPITVySRGTFIPR 157
Cdd:pfam00799  81 FHPNIQGAKSSSDVRSYVDKDGDTI-EWGTFQID 113
Gemini_AL1_M pfam08283
Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep ...
 171-276 6.24e-16

Geminivirus rep protein central domain; This is the cetral domain of the geminivirus rep proteins.


Pssm-ID: 285483  Cd Length: 107  Bit Score: 72.25  E-value: 6.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387600898  171 PKRNEIMRGIIETTtSKAEYLSEVQKAFPFEWATKLQQFEYSAERLFPTLPSPFVPPHPPSEPDLTCyETIRSWKDENIF 250
Cdd:pfam08283   4 TAKDEYAKAIINAT-SKEEYLQIIQEELPKDWVLQHHNIENNADKIFPEAPEPFVPPFPLSSFTNLP-EEMQDWVDDYFG 81

                          90       100
                  ....*....|....*....|....*.
gi 387600898  251 QVHPYIYMLEHPHCQSVEQAAESLKW 276
Cdd:pfam08283  82 VVSAARPMRPKSIIVEGESRTGKTMW 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH