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Conserved domains on  [gi|927372407|ref|YP_009164690|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Myiopsitta monachus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-167 1.75e-52

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 164.54  E-value: 1.75e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   1 MTYFVLILGVSFVLAALLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPR 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407  81 VWGGWRVVGYVLG-LAFVVGAGLASWG--FEVS--TVDGVGTFFV-RLDFSGVALFYSCGGGMFLVAGWGLLLTLFVVLE 154
Cdd:MTH00138  81 SWGSWSVLGYVVGyLVGVVLAAGLFWGgwYEGSwvVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 927372407 155 LVRGLSRGTIRAV 167
Cdd:MTH00138 161 LTRGLSRGALRAV 173
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-167 1.75e-52

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 164.54  E-value: 1.75e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   1 MTYFVLILGVSFVLAALLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPR 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407  81 VWGGWRVVGYVLG-LAFVVGAGLASWG--FEVS--TVDGVGTFFV-RLDFSGVALFYSCGGGMFLVAGWGLLLTLFVVLE 154
Cdd:MTH00138  81 SWGSWSVLGYVVGyLVGVVLAAGLFWGgwYEGSwvVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 927372407 155 LVRGLSRGTIRAV 167
Cdd:MTH00138 161 LTRGLSRGALRAV 173
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-155 1.22e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 56.36  E-value: 1.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   17 LLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSL-AADPFPRVWGGWRVVGYVLGLA 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 927372407   96 FVVGAGLASWGFEVSTVDGVGTFFVRLDFSGVA-LFYSCGGGMFLVAGWGLLLTLFVVLEL 155
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGeLLFTDYLLPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-167 1.75e-52

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 164.54  E-value: 1.75e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   1 MTYFVLILGVSFVLAALLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPR 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407  81 VWGGWRVVGYVLG-LAFVVGAGLASWG--FEVS--TVDGVGTFFV-RLDFSGVALFYSCGGGMFLVAGWGLLLTLFVVLE 154
Cdd:MTH00138  81 SWGSWSVLGYVVGyLVGVVLAAGLFWGgwYEGSwvVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 927372407 155 LVRGLSRGTIRAV 167
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-167 6.84e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 160.68  E-value: 6.84e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   1 MTYFVLILGVSFVLAALLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPR 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407  81 VWGGWRVVGYVLGLAFVV-------GAGLASWGFEVSTVDGVGTFFVRLDFSGVALFYSCGGGMFLVAGWGLLLTLFVVL 153
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVvvvgvvvGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 927372407 154 ELVRGLSRGTIRAV 167
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-167 8.70e-46

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 147.69  E-value: 8.70e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   1 MTYFVLILGVSFVLAALLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPR 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407  81 VWGGWRVVGYVLGLAFVVGAGLASWGFEVS-----TVDGVGTFFVRLDFSGVALFYSCGGGMFLVAGWGLLLTLFVVLEL 155
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLLLIVGYILFGCNFSleflfTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                        170
                 ....*....|..
gi 927372407 156 VRGLSRGTIRAV 167
Cdd:MTH00065 161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-158 1.49e-29

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 106.42  E-value: 1.49e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   1 MTYFVLILGVSFVLAALLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPR 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407  81 VWGGWRVVGYVLGLAFVVGAGLASWGFEVSTV---------------DGVGTFFVRLDFSGVALFYSCGGGMFLVAGWGL 145
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVevvfnfnglgdwviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|...
gi 927372407 146 LLTLFVVLELVRG 158
Cdd:MTH00109 162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-167 4.89e-25

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 94.67  E-value: 4.89e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   1 MTYFVLILGVSFVLAALLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPR 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407  81 VWGGWRVVGYVLGLAFVVG-AGLASWGFEVSTVDGVGTFFVRLDFSGVALFYSCGGGMFLVAGWGLLLTLFVVLELVRGL 159
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGfVGFYFYGGWEMLSWMGVDEANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVRGL 160


                 ....*...
gi 927372407 160 SRGTIRAV 167
Cdd:MTH00214 161 SRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-166 1.57e-16

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 72.25  E-value: 1.57e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   1 MTYFVLILgvsFVLAALLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPR 80
Cdd:MTH00045   2 VFYLFLIL---MLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407  81 VWGGWRVVGYVLGLAFVVGAGLASWgfeVSTVDGVGTFFVRLDFSGVALFYSCGGGMFLVAGWGLLLTLFVVLELVRGLS 160
Cdd:MTH00045  79 VSNLGEVLVLSLLLSLWVFISFDNF---LELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHE 155


                 ....*.
gi 927372407 161 RGTIRA 166
Cdd:MTH00045 156 YSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-155 1.22e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 56.36  E-value: 1.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372407   17 LLVASNPSPYYGAVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSL-AADPFPRVWGGWRVVGYVLGLA 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 927372407   96 FVVGAGLASWGFEVSTVDGVGTFFVRLDFSGVA-LFYSCGGGMFLVAGWGLLLTLFVVLEL 155
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGeLLFTDYLLPFELASVLLLVALVGAIVL 141
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 49-74 4.43e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 35.94  E-value: 4.43e-03
                         10        20
                 ....*....|....*....|....*.
gi 927372407  49 SFVSLVLFMVYLGGMLVVFVYSVSLA 74
Cdd:MTH00166  46 FWFSYILFLIFLGGMLVLFIYITSLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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