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Conserved domains on  [gi|938339318|ref|YP_009171519|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Pseudothericles compressifrons]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 6.78e-36

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 118.81  E-value: 6.78e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAATILSKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 938339318  81 LNSSSMITWTISIMTFIMILLMGLYHEWNQGALQWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 6.78e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 118.81  E-value: 6.78e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAATILSKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 938339318  81 LNSSSMITWTISIMTFIMILLMGLYHEWNQGALQWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 3.29e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 80.55  E-value: 3.29e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   19 MMAATILSKKmIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIILNSSSMITWtISIMTFIM 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGF-VEMLIFIA 78

                          90
                  ....*....|....*.
gi 938339318   99 ILLMGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-115 3.46e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 73.62  E-value: 3.46e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318  10 LSFMIPILVMMAATILSKKMiYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIILNSSSMITW 89
Cdd:COG0838   14 VALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGL 92

                         90       100
                 ....*....|....*....|....*.
gi 938339318  90 tISIMTFIMILLMGLYHEWNQGALQW 115
Cdd:COG0838   93 -IEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 6.78e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 118.81  E-value: 6.78e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAATILSKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 938339318  81 LNSSSMITWTISIMTFIMILLMGLYHEWNQGALQWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 4-115 7.54e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 116.03  E-value: 7.54e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   4 MLISTMLSFMIPILVMMAATILSKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIILNS 83
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 938339318  84 SSMITWTISIMTFIMILLMGLYHEWNQGALQW 115
Cdd:MTH00161  82 SNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 1.17e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 105.46  E-value: 1.17e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAATILSKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 938339318  81 LNSSSMITWTISIMTFIMILLMGLYHEWNQGALQWA 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 4.24e-30

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 104.17  E-value: 4.24e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAATILSKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 938339318  81 LNSSSMITWTISIMTFIMILLMGLYHEWNQGALQWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 1.43e-24

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 90.04  E-value: 1.43e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAATILSKKMIyDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 938339318  81 LNSSSMITWTISIMTFIMILLMGLYHEWNQGALQWAD 117
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-116 1.87e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 86.86  E-value: 1.87e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   2 MSMLISTMLSFMIPILVMMAATILSKkMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIIL 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 938339318  82 NSSSMITWTISIMTFIMILLMGLYHEWNQGALQWA 116
Cdd:MTH00113  80 NLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-117 1.70e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 84.61  E-value: 1.70e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   2 MSMLISTMLSFMIPILVMMAATILSKKMIYdREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIIL 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 938339318  82 NSSSMITWTISIMTFIMILLMGLYHEWNQGALQWAD 117
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-117 1.54e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 82.27  E-value: 1.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSfmipiLVMMAATILSKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPI--- 77
Cdd:MTH00136   5 TTILTITIALS-----LILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwg 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 938339318  78 IIILNSSSMITWTISImtfIMILLMGLYHEWNQGALQWAD 117
Cdd:MTH00136  80 DQLPSPLLTFFWATAV---LILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 3.29e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 80.55  E-value: 3.29e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   19 MMAATILSKKmIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIILNSSSMITWtISIMTFIM 98
Cdd:pfam00507   1 LLLSRLLGPK-RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGF-VEMLIFIA 78

                          90
                  ....*....|....*.
gi 938339318   99 ILLMGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-117 1.58e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 79.65  E-value: 1.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFmipILVMMAATIlsKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00069   3 MLMLLISTILSL---ILITISFWL--PLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWA 77

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 938339318  81 LNSSSMITwTISIMTFIMILL-MGLYHEWNQGALQWAD 117
Cdd:MTH00069  78 SQLNTPTN-TLFWSTLILILLtLGLIYEWIQGGLEWAE 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 3.58e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 78.40  E-value: 3.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAAtILSKKMIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEiaLIIPIIII 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIA-FWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLE--IALLLPLP 77

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 938339318  81 LNSSSMITWTISIMTFIMILLMGLYHEWNQGALQW 115
Cdd:MTH00203  78 WSNQLSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 2-115 1.45e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 74.71  E-value: 1.45e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   2 MSMLISTMLSFMIPILVMMAATILSKKmIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIIL 81
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVK-QPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLY 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 938339318  82 NSSSMITWTIsIMTFIMILLMGLYHEWNQGALQW 115
Cdd:MTH00018  80 NQIAPFGFWT-MVGFLFILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 5-116 2.27e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 74.13  E-value: 2.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   5 LISTMLSFMIPILVMMAATILSKKMiYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIILNSS 84
Cdd:PRK06602  12 LIFLIVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREI 90

                         90       100       110
                 ....*....|....*....|....*....|..
gi 938339318  85 SMITWtISIMTFIMILLMGLYHEWNQGALQWA 116
Cdd:PRK06602  91 GWLGF-VEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-115 3.46e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 73.62  E-value: 3.46e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318  10 LSFMIPILVMMAATILSKKMiYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIILNSSSMITW 89
Cdd:COG0838   14 VALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGL 92

                         90       100
                 ....*....|....*....|....*.
gi 938339318  90 tISIMTFIMILLMGLYHEWNQGALQW 115
Cdd:COG0838   93 -IEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 1.03e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 67.43  E-value: 1.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAATILSKKMIyDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00055   5 FLGIFILLLFSIGLSTVISGASYIVGVKQP-DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 938339318  81 LNSSSMI-TWTISImtFIMILLMGLYHEWNQGALQW 115
Cdd:MTH00055  84 YNQIGLFgFWVMYL--FLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-115 8.02e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 62.64  E-value: 8.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   3 SMLISTMLSFMIPILVMMAATILSKKMI----YDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPII 78
Cdd:MTH00030   7 TIFFSTLLGVGIILLLVSISFTLGNSRIgltkPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS 86

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 938339318  79 IILNSSSMITWTIsIMTFIMILLMGLYHEWNQGALQW 115
Cdd:MTH00030  87 IVFNQLNLFSFWI-VYTFLIVLAIGLAYEWIKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
2-115 1.61e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 43.58  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   2 MSMLISTMLSFMIPILVMMAATILSKKmIYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIIIL 81
Cdd:PRK07756  10 MIVLIFLLLGILLPVVALTLGRMLRPN-KPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                         90       100       110
                 ....*....|....*....|....*....|....
gi 938339318  82 NSSSMITwTISIMTFIMILLMGLYHEWNQGALQW 115
Cdd:PRK07756  89 DKLGLFA-LIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
9-115 1.00e-05

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 41.58  E-value: 1.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   9 MLSFMIPILVMMAATILSKKMI-YDRE--KSSPFECGFDPKSSARTpFSLRFFLIAVIFLIFDVEIALIIPIIIILNSSS 85
Cdd:PRK08489  18 VLTFVAFFLTTRLARFISRKLAqKNTEklKLAIYECGPEPVKQPNR-ISSHFYIMALLFILFDVEIVFMFPWAVDFKLLG 96

                         90       100       110
                 ....*....|....*....|....*....|
gi 938339318  86 MITWtISIMTFIMILLMGLYHEWNQGALQW 115
Cdd:PRK08489  97 LFGL-IEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 14-115 4.82e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 36.96  E-value: 4.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318  14 IPILVM-----------MAATILSKKMIYDREKSSPFECGFDPKSSARTP--FSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:PRK07928   5 IPILVLgalaaafavvsVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVS 84

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 938339318  81 LNSSSMITwTISIMTFIMILLMGLYHEWNQGALQW 115
Cdd:PRK07928  85 FDALGVFG-LVEMALFMLTVFVAYAYVWRRGGLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 1.06e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 36.03  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339318   1 MMSMLISTMLSFMIPILVMMAATILSKKMiYDREKSSPFECGFDPKSSARTPFSLRFFLIAVIFLIFDVEIALIIPIIII 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 938339318  81 LNSSSmitwtISIMTFIMILLMGLYHEWNQGALQW 115
Cdd:MTH00092  80 DFSSL-----ISFFMLMIFIFFGFYMEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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