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Conserved domains on  [gi|938339323|ref|YP_009171524|]
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cytochrome b (mitochondrion) [Pseudothericles compressifrons]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 684.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  12 LKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  92 FVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 172 DNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLSMMSPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 252 GDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQIMFWFMVT 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 938339323 332 IVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 684.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  12 LKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  92 FVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 172 DNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLSMMSPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 252 GDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQIMFWFMVT 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 938339323 332 IVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-365 7.07e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 354.87  E-value: 7.07e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  12 LKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  92 FVCIYLHVGRGLYYGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGF 169
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 170 AVDNPTLNRFFTFH-FILPFIIAAMTIIHLFFLHQSGSNNPLG----MNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLS 244
Cdd:COG1290  180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 245 MMSPylLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPIN 322
Cdd:COG1290  260 FFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 938339323 323 QIMFWFMVTIVVLLTWIGKRPveEPFIMTGQILTVMYFSYYLL 365
Cdd:COG1290  338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.06e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 260.76  E-value: 1.06e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  10 LLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  90 FFFVCIYLHVGRGLYYGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 938339323 168 GFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.14e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 234.97  E-value: 1.14e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   19 LVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFFFVCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   99 VGRGLYYGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 938339323  177 NRFFTFHFILPFIIAAMTIIHLFFLHQSG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 240-340 2.29e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 61.74  E-value: 2.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  240 LIMLSMMSPYLLGDPdnfipANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTN-FRGIEF 318
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNkFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 938339323  319 YPINQIMFWFMvTIVVLltWIG 340
Cdd:TIGR01156 126 RPVATTVFLFG-TVVAL--WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 684.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  12 LKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  92 FVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 172 DNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLSMMSPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 252 GDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQIMFWFMVT 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 938339323 332 IVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 622.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   1 MLKPMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIM 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  81 RTIHANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNE 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 161 LVQWIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 241 IMLSMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 938339323 321 INQIMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLNIHMSNLWDNLI 377
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00074
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 612.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   1 MLKPMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIM 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  81 RTIHANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNE 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 161 LVQWIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 241 IMLSMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 938339323 321 INQIMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLNIHMSNLWDN 375
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLEN 375
CYTB MTH00131
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 610.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   5 MRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIH 84
Cdd:MTH00131   4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  85 ANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQW 164
Cdd:MTH00131  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 165 IWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLS 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 245 MMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQI 324
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 938339323 325 MFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLL 365
Cdd:MTH00131 324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 609.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   5 MRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  85 ANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 165 IWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLS 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 245 MMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 938339323 325 MFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLL 365
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00119
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 606.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   1 MLKPMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIM 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  81 RTIHANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNE 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 161 LVQWIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 241 IMLSMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 938339323 321 INQIMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLL 365
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 589.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   1 MLKPMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIM 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  81 RTIHANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNE 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 161 LVQWIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 241 IMLSMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 938339323 321 INQIMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLNIHMSNLWDNLIK 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00100
cytochrome b; Provisional
 4-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 588.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   4 PMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTI 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  84 HANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQ 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 164 WIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIML 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 244 SMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 938339323 324 IMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLNIHMSNLWDN 375
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIEN 374
CYTB MTH00034
cytochrome b; Validated
 4-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 559.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   4 PMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTI 83
Cdd:MTH00034   3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  84 HANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQ 163
Cdd:MTH00034  83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 164 WIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIML 243
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 244 SMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQ 323
Cdd:MTH00034 243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 938339323 324 IMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLNIHMSNLWDNLI 377
Cdd:MTH00034 323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKL 376
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 517.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   1 MLKPMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIM 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  81 RTIHANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNE 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 161 LVQWIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 241 IMLSMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 938339323 321 INQIMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLNIHMSNLWDNLIK 378
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-367 4.36e-176

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 494.60  E-value: 4.36e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   4 PMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTI 83
Cdd:MTH00022   2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  84 HANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQ 163
Cdd:MTH00022  82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 164 WIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIML 243
Cdd:MTH00022 162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 244 SMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQ 323
Cdd:MTH00022 242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 938339323 324 IMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLNI 367
Cdd:MTH00022 322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00053
cytochrome b; Provisional
 1-375 6.68e-172

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 484.21  E-value: 6.68e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   1 MLKPMRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIM 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  81 RTIHANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNE 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 161 LVQWIWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 241 IMLSMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 938339323 321 INQIMFWFMVTIVVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLLNIHMSNLWDN 375
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLEN 375
CYTB MTH00033
cytochrome b; Provisional
 5-376 5.43e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 393.15  E-value: 5.43e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   5 MRLKHLLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIH 84
Cdd:MTH00033   1 MRLRKTGLLEPVNDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  85 ANGASFFFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQW 164
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 165 IWGGFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLS 244
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 245 MMS--PYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPIN 322
Cdd:MTH00033 241 IEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 938339323 323 QIMFWFMVTIVVLLTWIGKRPV-EEPFIMTGQILTVMYFSYYLLNIHMSNLWDNL 376
Cdd:MTH00033 321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNL 375
CYTB MTH00086
cytochrome b; Provisional
 13-365 2.15e-123

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 360.02  E-value: 2.15e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  13 KIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  93 VCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFAVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 173 NPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITfIVMTTSLIMLSMMSPYLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 253 DPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNktNFRGIeFYPINQIMFWFMVTI 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN--NYTSC-LNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 938339323 333 VVLLTWIGKRPVEEPFIMTGQILTVMYFSYYLL 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-365 7.07e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 354.87  E-value: 7.07e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  12 LKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  92 FVCIYLHVGRGLYYGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGF 169
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 170 AVDNPTLNRFFTFH-FILPFIIAAMTIIHLFFLHQSGSNNPLG----MNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLS 244
Cdd:COG1290  180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 245 MMSPylLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPIN 322
Cdd:COG1290  260 FFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 938339323 323 QIMFWFMVTIVVLLTWIGKRPveEPFIMTGQILTVMYFSYYLL 365
Cdd:COG1290  338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.06e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 260.76  E-value: 1.06e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  10 LLLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  90 FFFVCIYLHVGRGLYYGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 938339323 168 GFAVDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-358 5.99e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 261.84  E-value: 5.99e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  11 LLKIVNNSLVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASF 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  91 FFVCIYLHVGRGLYYGSYMYMHTWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFA 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 171 VDNPTLNRFFTFHFILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNM-DKIPFHPYFTFKDSITFIVMTTSLIMLSMMSPY 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 250 LLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLVASIAILMIMPFYNKTNFRGIefypINQIMFWFM 329
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                        330       340
                 ....*....|....*....|....*....
gi 938339323 330 VTIVVLLTWIGKRPVEEPFIMTGQILTVM 358
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.14e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 234.97  E-value: 1.14e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   19 LVDLPAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFFFVCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   99 VGRGLYYGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 938339323  177 NRFFTFHFILPFIIAAMTIIHLFFLHQSG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 2.06e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 158.19  E-value: 2.06e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 208 NPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLSMMSPYLLGDPDNFIPANPMVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 938339323 288 KLGGVIALVASIAILMIMPFYNKTNFRGiEFYPINQIMFWFMVTIVVLLTWIGKRPVEEPFIMTGQI 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 7.72e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 152.01  E-value: 7.72e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323   89 SFFFVCIYLHVGRGLYYGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  167 GGFAVDNPTLNRFFTFHF-ILPFIIAAMTIIHLFFLHQSGSNNPLGMNSNMDKIPFHPYFTFKDSITFIVMTTSLIMLSM 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 938339323  246 MSPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 3.91e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 142.62  E-value: 3.91e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  259 PANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTNFRGIEFYPINQIMFWFMVTIVVLLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 938339323  339 IGKRPVEEPFIMTGQILTVMY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 1.37e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 129.83  E-value: 1.37e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  23 PAPINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFFFVCIYLHVGRG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 103 LYYGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFAVDNPTLNRFF 180
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|.
gi 938339323 181 TFH-FILPFIIAAMTIIHLFFLHQSGSNNPL 210
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 1.62e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 107.88  E-value: 1.62e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  25 PINISFWWNFGSLLGLCLIIQIAAGLFLAMHYTANIEMAFNSVVHICRDVNNGWIMRTIHANGASFFFVCIYLHVGRGLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 105 YGSYMYMH--TWMVGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYMGNELVQWIWGGFAVDNPTLNRFFTF 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 938339323 183 H-FILPFIIAAMTIIHLFFLHQSGSNNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 240-336 1.03e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.41  E-value: 1.03e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 240 LIMLSMMSPYLLGDPdnfipANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFY-NKTNFRGIEF 318
Cdd:CHL00058  51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFR 125

                         90
                 ....*....|....*...
gi 938339323 319 YPINQIMFWFMVTIVVLL 336
Cdd:CHL00058 126 RPVATTVFLIGTAVALWL 143
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 241-348 1.97e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.97e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323 241 IMLSMMSPYLLGDPdnfipANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTN-FRGIEFY 319
Cdd:COG5679   53 IGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNkFQNPFRR 127

                         90       100       110
                 ....*....|....*....|....*....|
gi 938339323 320 PINQIMFWFMvTIVVLLTWIGKR-PVEEPF 348
Cdd:COG5679  128 PVATAVFLFG-TLVTLWLGIGAAlPIDKSL 156
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 240-340 2.29e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 61.74  E-value: 2.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339323  240 LIMLSMMSPYLLGDPdnfipANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPFYNKTN-FRGIEF 318
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNkFQNPFR 125

                          90       100
                  ....*....|....*....|..
gi 938339323  319 YPINQIMFWFMvTIVVLltWIG 340
Cdd:TIGR01156 126 RPVATTVFLFG-TVVAL--WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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