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Conserved domains on  [gi|938339400|ref|YP_009171565|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Mirhipipteryx andensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 8.15e-78

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.65  E-value: 8.15e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   1 MQLNSTNLVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHF 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  81 PL-FPTSFINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSlTTFSMIIIILSITSGAL 159
Cdd:MTH00160  81 NLmLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAIIGAI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 160 GGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMIN 239
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 240 LLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLAFSSFLISSSTSSFMMASNpatplhsKWEMS 319
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKK-------KNKFS 312

                        330       340
                 ....*....|....*....|...
gi 938339400 320 LTVYFTLTMSIMGLSLTSWSIYL 342
Cdd:MTH00160 313 LILNFLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 8.15e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.65  E-value: 8.15e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   1 MQLNSTNLVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHF 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  81 PL-FPTSFINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSlTTFSMIIIILSITSGAL 159
Cdd:MTH00160  81 NLmLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAIIGAI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 160 GGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMIN 239
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 240 LLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLAFSSFLISSSTSSFMMASNpatplhsKWEMS 319
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKK-------KNKFS 312

                        330       340
                 ....*....|....*....|...
gi 938339400 320 LTVYFTLTMSIMGLSLTSWSIYL 342
Cdd:MTH00160 313 LILNFLSFISLFGLILSSLLFLL 335
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-288 1.70e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.66  E-value: 1.70e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   9 VFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLI-MSKPNVLSTDSSIKYFIIQALASSTLLLFITLN-------HF 80
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgslNL 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  81 PLFPTSFINQALSSAILL------------KMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVI---------SYC 139
Cdd:COG1007  186 AGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 140 LSLTTFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLW----MIYFMIYSIINL-----ILIWS 210
Cdd:COG1007  266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLgafavILLLS 345

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938339400 211 FYFFNLNMISQLFNYGAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:COG1007  346 RKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-278 7.08e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 7.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   24 ASSWFGVWMGLEINLLSFIPLI-MSKPNVLSTDSSIKYFIIQALASSTLL-----------------LFITLNHFPLFPT 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLfgislmynytgtlsfdeLSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   86 SFINQ-ALSSAILLKMGAGPFFFWFPEVMEGLSWLNS-FTLLTWQKLAPFMVISYCLSLTTFS-------MIIIILSITS 156
Cdd:pfam00361  81 LLLLFlLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSaLLAATLVKAGGYGLIRRSLLYLPSSpfiqqilLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  157 GALGGLNQTSTRKIMAFSSINHMGWMLMAISLSD----SLWMIYFMIYSIINLILIWSFYFFNLNMISQ--LFNYGAHYN 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 938339400  231 ---LVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMS 278
Cdd:pfam00361 241 tmpILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-289 9.66e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.84  E-value: 9.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   15 IIGSIMSISASSWFGVWMGLEINLLSFIPLI-MSKPNVLSTDSSIKYFIIQALASSTLLLFITL-----------NHFPL 82
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfeDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   83 FPTSFINQAL--------SSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVI---------SYCLSLTTF 145
Cdd:TIGR01770 192 LSNGMLNISLlllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  146 SMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWM----IYFMIYSIINL---ILIWSFYFFNLNM 218
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLgafGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 938339400  219 ISQLFNYGA---HYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLA 289
Cdd:TIGR01770 352 IEYISDFAGlfkTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 8.15e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.65  E-value: 8.15e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   1 MQLNSTNLVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHF 80
Cdd:MTH00160   1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  81 PL-FPTSFINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSlTTFSMIIIILSITSGAL 159
Cdd:MTH00160  81 NLmLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAIIGAI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 160 GGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMIN 239
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 240 LLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLAFSSFLISSSTSSFMMASNpatplhsKWEMS 319
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKK-------KNKFS 312

                        330       340
                 ....*....|....*....|...
gi 938339400 320 LTVYFTLTMSIMGLSLTSWSIYL 342
Cdd:MTH00160 313 LILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-289 8.97e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 193.12  E-value: 8.97e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   6 TNLVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLN------- 78
Cdd:MTH00112   5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNawntgqw 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  79 --HFPLFPTSFInqALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPF--MVISYCLSLTTFSMIIIILSI 154
Cdd:MTH00112  85 diTQLTNPTSCT--LLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLtlLLMTSNSLNPTLLLTLAILST 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 155 TSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKL 234
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 938339400 235 LIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLA 289
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLT 297
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 12-288 7.29e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 182.74  E-value: 7.29e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  12 LSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLN-----HFPLFPTS 86
Cdd:MTH00105  11 LTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINlmysgQWTITKLT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  87 fiNQALSS----AILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPfMVISYCLSLTTFSMIIIILSITS---GAL 159
Cdd:MTH00105  91 --NPTASTlmtiALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAP-LSILYQISPSINPNLLLTLAILSiliGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 160 GGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILiwsFYFFNLN------MISQLFNYGAhynLVK 233
Cdd:MTH00105 168 GGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTM---FMLLMLNsstttlSLSHTWNKTP---LMT 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 938339400 234 LLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:MTH00105 242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRL 296
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 5-289 8.02e-53

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 177.82  E-value: 8.02e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   5 STNLVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHF---- 80
Cdd:MTH00041   4 NVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWlsgs 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  81 -----PLFPTSFInqALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSLTTFSMIII--ILS 153
Cdd:MTH00041  84 wsingPLNTLSSI--IITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILcgILS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 154 ITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVK 233
Cdd:MTH00041 162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 938339400 234 LLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLA 289
Cdd:MTH00041 242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRIS 297
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 9-289 8.64e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 174.72  E-value: 8.64e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   9 VFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHFPL------ 82
Cdd:MTH00070   8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTgewtim 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  83 -FPTSFINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPfMVISYCLSLTTFSMIIIILSITS---GA 158
Cdd:MTH00070  88 nMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAP-MALLIQISHLLNSNLLIIMGLLStliGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 159 LGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMI 238
Cdd:MTH00070 167 WGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMML 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 938339400 239 NLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLA 289
Cdd:MTH00070 247 TLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLS 297
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-288 9.45e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 169.60  E-value: 9.45e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   9 VFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHF-------- 80
Cdd:MTH00135   8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWltgqwdiq 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  81 ----PLfPTSFINQALSsailLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVIsyCLSLTTFSMIIIILSITS 156
Cdd:MTH00135  88 qmshPL-PTTMITLALA----LKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALI--LQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 157 ---GALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVK 233
Cdd:MTH00135 161 tlvGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 938339400 234 LLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRL 295
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-336 5.87e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 167.45  E-value: 5.87e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   8 LVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHF------- 80
Cdd:MTH00200   7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWtsgqwgi 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  81 PLFPTSFINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVIS--YCLSLTTFSMIIIILSITSGA 158
Cdd:MTH00200  87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 159 LGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMI 238
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 239 NLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLAFSSFLISSSTSSFMMASNPATPLHSKWEM 318
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                        330
                 ....*....|....*...
gi 938339400 319 SLTVYFTLTMSIMGLSLT 336
Cdd:MTH00200 327 LLLLLSILGLPLTPQLLF 344
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-286 1.94e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 163.13  E-value: 1.94e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   7 NLVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHFPLFpTS 86
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSF-SW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  87 FINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSLTTFSMIIIILSITS---GALGGLN 163
Cdd:MTH00144  85 FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLSalvGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 164 QTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNyGAHYNLVKLLIMINLLSL 243
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGS-LKPSYKTGLSIISLLLSL 243

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 938339400 244 GGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYL 286
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYL 286
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-308 1.30e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 157.91  E-value: 1.30e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   9 VFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHFPLFPTSFI 88
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  89 NQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSLTTFSMIIIILSITSGALGGLNQTSTR 168
Cdd:MTH00197  82 VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 169 KIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMINLLSLGGLPP 248
Cdd:MTH00197 162 QLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPP 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 249 FMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLAFSSFLISSSTSSFMMASNP 308
Cdd:MTH00197 242 LSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINL 301
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-288 2.85e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 152.24  E-value: 2.85e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   6 TNLVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHF-PLFP 84
Cdd:MTH00011   7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSfPSLL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  85 TSFINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSLTTFSMIIII--LSITSGALGGL 162
Cdd:MTH00011  87 KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMaaMSALAGGLGGM 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 163 NQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMINLLS 242
Cdd:MTH00011 167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 938339400 243 LGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:MTH00011 247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-288 1.70e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.66  E-value: 1.70e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   9 VFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLI-MSKPNVLSTDSSIKYFIIQALASSTLLLFITLN-------HF 80
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgslNL 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  81 PLFPTSFINQALSSAILL------------KMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVI---------SYC 139
Cdd:COG1007  186 AGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 140 LSLTTFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLW----MIYFMIYSIINL-----ILIWS 210
Cdd:COG1007  266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLgafavILLLS 345

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938339400 211 FYFFNLNMISQLFNYGAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:COG1007  346 RKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-278 7.08e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 7.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   24 ASSWFGVWMGLEINLLSFIPLI-MSKPNVLSTDSSIKYFIIQALASSTLL-----------------LFITLNHFPLFPT 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLfgislmynytgtlsfdeLSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   86 SFINQ-ALSSAILLKMGAGPFFFWFPEVMEGLSWLNS-FTLLTWQKLAPFMVISYCLSLTTFS-------MIIIILSITS 156
Cdd:pfam00361  81 LLLLFlLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSaLLAATLVKAGGYGLIRRSLLYLPSSpfiqqilLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  157 GALGGLNQTSTRKIMAFSSINHMGWMLMAISLSD----SLWMIYFMIYSIINLILIWSFYFFNLNMISQ--LFNYGAHYN 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 938339400  231 ---LVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMS 278
Cdd:pfam00361 241 tmpILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 9-288 9.54e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 98.55  E-value: 9.54e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   9 VFVLSLIIGSIMSISASSWFGVWMGLEINLLS-FIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFITLNHFPLFPTSF 87
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  88 --INQALSS---------AILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSLTTFSMIIIILSITS 156
Cdd:MTH00199 181 qgINSILTGdvgkilitiSLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIY 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 157 GALGGLNQTSTRKIMAFSSINHMGWMLMAI------SLSDSL-WMIYFMIYSIINLILIWSFYFfNLNMISQLFNYGAHY 229
Cdd:MTH00199 261 GAIGALNQTKIKRLLAYSGIGHMGFILFGVaigsfeSIQASLiYMIIYVIMSICSFSIILSLKL-TKGLIVEVSGLSRKN 339

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 938339400 230 NLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:MTH00199 340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 14-288 5.27e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 95.48  E-value: 5.27e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  14 LIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPN-VLSTDSSIKYFIIQALASSTLLLFITL--------------- 77
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGsGYSAEAGLKYFVLGALSSGLFLFGCALlcgttgglhlsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  78 -----NHFPLFPTSFINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSLTTFSMIIIIL 152
Cdd:MTH00196  82 vlnsgQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 153 SITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISL----SDSLWMIYFMIYSIINlILIWSF---YFFNLNMISQLFNY 225
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMS-ICVFSIilaLNVYKNLIIEFSGL 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 938339400 226 GAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:MTH00196 241 SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-288 1.61e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 92.19  E-value: 1.61e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   9 VFVLSL--IIGSIMSISASSWFGVWMGLEINLLSFIPLI-MSKPNVLSTDSSIKYFIIQALASSTLLLFITL-------- 77
Cdd:PRK05777 105 FYLLVLfaLLGMMVMVSANDLLTLFLGLELLSLPLYALAaLRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlygatgsl 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  78 -------------NHFPLFPTSFInqALSSAILLKMGAGPFFFWFPEVMEGLSwlNSFTLL--TWQKLAPFMVI------ 136
Cdd:PRK05777 185 sfagiakaladgsGNSLLLLFGLV--FLLVGLAFKLSAVPFHMWTPDVYEGAP--TPVTAFlaTAPKIAAFAVLlrllvv 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 137 ---SYCLSLTTFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSL----WMIYFMIYSIINL---- 205
Cdd:PRK05777 261 afgGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLgafg 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 206 -ILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFF 284
Cdd:PRK05777 341 vISLLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFY 420


                 ....
gi 938339400 285 YLRL 288
Cdd:PRK05777 421 YLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-289 9.66e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.84  E-value: 9.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   15 IIGSIMSISASSWFGVWMGLEINLLSFIPLI-MSKPNVLSTDSSIKYFIIQALASSTLLLFITL-----------NHFPL 82
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfeDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   83 FPTSFINQAL--------SSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVI---------SYCLSLTTF 145
Cdd:TIGR01770 192 LSNGMLNISLlllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  146 SMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWM----IYFMIYSIINL---ILIWSFYFFNLNM 218
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLgafGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 938339400  219 ISQLFNYGA---HYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRLA 289
Cdd:TIGR01770 352 IEYISDFAGlfkTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 6-288 2.23e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 67.96  E-value: 2.23e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400   6 TNLVFVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPL---------IMSKPNVLSTDSSIKYFIIQALASSTLLLFIT 76
Cdd:MTH00198 189 SGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFGCA 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  77 L---------------------NHFPLFPTSFINQALSSAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMV 135
Cdd:MTH00198 269 LyfgftgnegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYIL 348

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 136 ISYCLSLTTFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISL-------SDSLWMIYFMIYSIINLILI 208
Cdd:MTH00198 349 LTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAgtyeslqASWTYAVTYLVSALASFTVI 428

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 209 WSFYFFNLNMISQ------LFNYGAHYNLVKLLIM------------INLLSLGGLPPFMGFFPKWMILQSMLQL----N 266
Cdd:MTH00198 429 CTLEEFGTRTPTSrqrdgsFGNYNLVRRLVDLTILsrgqpyiafslaIVFLSLAGIPPLLGFLGKWFILVGSIKIafssS 508

                        330       340
                 ....*....|....*....|....*
gi 938339400 267 LMILSMVML---IMSIITVFFYLRL 288
Cdd:MTH00198 509 LSIYYLVALfaiICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-288 7.18e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 65.94  E-value: 7.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  10 FVLSLIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLSTDSSIKYFIIQALASSTLLLFI--------TLN--- 78
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVgllygatgTLNmad 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  79 ---HFPLFPTSFINQALSSAIL---LKMGAGPFFFWFPEVME----GLSWLNSFTLLtwqKLAPFMVI---------SYC 139
Cdd:COG0651  192 laaRLAELDPGLLLAAFALLLVgfgIKAALFPLHFWLPDAYPaapsPVSALLSGLLT---KVGVYAILrvltllfgaDPA 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 140 LSLTTFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLwMIYFMIYSIINLILIWSFYFF----- 214
Cdd:COG0651  269 LFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPL-GLAGALFHLLNHALAKALLFLaagai 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938339400 215 ----NLNMISQLFNYGAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:COG0651  348 eratGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 142-288 1.15e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 62.30  E-value: 1.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 142 LTTFSMIIIILSITSGALGGLN---QTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYsIINLILIWSFYFFNLNM 218
Cdd:PRK12667 291 RAALSPILIILGAVSAIIGALMmvvQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFH-IINHAIAKSLLFLASGV 369

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 938339400 219 ---------ISQLFNYGAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:PRK12667 370 fihaagtrdIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRA 448
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 140-288 6.67e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.89  E-value: 6.67e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 140 LSLTTFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWM----IYFMIYSIINLILIWS----F 211
Cdd:PRK08375 268 LGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALaaglLHLLHHALMKGALFLAagaiE 347

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 938339400 212 YFFNLNMISQLFNYGAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:PRK08375 348 VTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
94-287 4.40e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 57.75  E-value: 4.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  94 SAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPF------MVISYCLSLTTFSMIIIILSITSGALG---GLNQ 164
Cdd:PRK02504 218 AGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFalairlLVTAFPSFDEQWKLLFTALAILSMVLGnvvALAQ 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 165 TSTRKIMAFSSINHMGWMLMAISLSD----SLWMIYFMIYSIINLILIWSFYFFNLNMIS-QLFNYGAHYN---LVKLLI 236
Cdd:PRK02504 298 TSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNLGAFACVILFSLRTGTdQISDYAGLYQkdpLLTLGL 377

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 938339400 237 MINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLR 287
Cdd:PRK02504 378 SLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
148-288 7.32e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.80  E-value: 7.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 148 IIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWM---IYFMIYSIInlilIWSFYFF---NLNMISQ 221
Cdd:PRK12663 277 TMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngaIFYLVHDMV----VKTALFLiagSLVRLTG 352

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 938339400 222 LFNYGAHYNLVK------LLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:PRK12663 353 YRSLQYLGGLYRkeplfgALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
ndhB CHL00049
NADH dehydrogenase subunit 2
 148-288 1.64e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 52.70  E-value: 1.64e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 148 IIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLW-----MIYFMIYSIINLILIWSFYFFNLNM-ISQ 221
Cdd:CHL00049 285 ILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDgyasmITYMLFYIFMNLGTFACIVLFGLRTgTDN 364

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 222 LFNYGAHYN---LVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:CHL00049 365 IRDYAGLYTkdpFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-287 7.88e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.48  E-value: 7.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  55 DSSIKYFIIQALASSTLLLFI--------TLN--------HFPLFPTSFINQAL-SSAILLKMGAGPFFFWFPEVM-EGL 116
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIallygqygTLNmaylavkmSENPTVVAKIALALfIAGLAMKSGAVPVHMWLPDAYpAAP 251

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 117 SWLNSFTLLTWQK------LAPFMVISYCLSLTTFSMIIIILSITSGALG---GLNQTSTRKIMAFSSINHMGWMLMAI- 186
Cdd:PRK08376 252 SSISAMLLVIKQAglyalaRVLFSIYGPAINLATVGWVIIILGCLTMFVGvamAVVQKDVKRLLAYHSVSQIGYMLLGLg 331

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 187 ----SLSDSLWMIYFM------IYSIINLILIWSFYFF------------NLNMISQLfnyGAHYNLVKLLIMINLLSLG 244
Cdd:PRK08376 332 vglaALGDPAMASYGEialaggIYHIVNHALYKALLFLtagaviyetgtrNLNELGGL---ARTMPKTTIAFLIGAAAIV 408

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 938339400 245 GLPPFMGFFPKWMILQSMLQLNlMILSMVMLIMSIITVFFYLR 287
Cdd:PRK08376 409 GLPPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVK 450
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
142-287 1.14e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 50.03  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 142 LTTFSMIIIILSITSGALG---GLNQTSTRKIMAFSSINHMGWMLMAISLSDSLwMIYFMIYSIINLILIWSFYFFNLNM 218
Cdd:PRK06277 262 FPSAQGVLIALSVLAMVFGvvmALLQTDYKRLLAYHAISQGGYVAAGLALGTPL-GIVAGIFHAINHVIYKSALFLGAGI 340

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938339400 219 ISQLFNYG---------AHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLR 287
Cdd:PRK06277 341 VSYRTKTSnlrklggllPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMK 418
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 141-261 4.47e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 48.04  E-value: 4.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 141 SLTTFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYfMIYSIINLILIWSFYFFNLNMI- 219
Cdd:PRK12665 271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSG-AIYYVAHHITVQTTLFLVVGLIe 349

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 938339400 220 --------SQLFNYGAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQS 261
Cdd:PRK12665 350 rqagssslRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEA 399
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-288 2.99e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 45.71  E-value: 2.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 144 TFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYfMIYSIINLILIWSFYFFNLNMISQLF 223
Cdd:PRK07691 276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIG-AIYYLIHDMIVKAALFLLIGIMIKIT 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 938339400 224 NYG---------AHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:PRK07691 355 GTTdlkkmggliKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 144-284 4.68e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.13  E-value: 4.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 144 TFSMIII---ILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLwMIYFMIYSIINLILIWSFYFFNLNMIS 220
Cdd:PRK08676 271 QFSNVLIglgIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPL-ALFWMLFHMLAHSLVKSGLFFSAGILH 349

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 938339400 221 QLFNYGAHYNLVKLL---------IMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFF 284
Cdd:PRK08676 350 RQYRSDRFDRIFDVFrlqpvaawgVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSF 422
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 14-277 5.29e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 44.09  E-value: 5.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  14 LIIGSIMSISASSWFGVWMGLEINLLSFIPLIMSKPNVLStdssikYFIIQALASSTLLLFiTLNHFPLFptsfinqals 93
Cdd:MTH00091   3 LSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFN------YFVLQESLGLLFLLF-SFGYFQFL---------- 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400  94 sAILLKMGAGPFFFWFPEVMEGLSWLNSFTLLTWQKLAPFMVISYCLSLTTFSMIIIILSITsgalgglnqtstrkIMAF 173
Cdd:MTH00091  66 -ILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLIC--------------FFQM 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 174 SSINHMGWMLMAISLSDSLWMIYFMIYSIINLILIWSFYFFNLNMISQLFNYGAHYNLVKLLIMINLLSlggLPPFMGFF 253
Cdd:MTH00091 131 FLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWETLLVFMN---LPFSVTFF 207

                        250       260
                 ....*....|....*....|....
gi 938339400 254 PKWMILQSMLQLNLMILSMVMLIM 277
Cdd:MTH00091 208 VKIFSLSEILKVLGFFLLFLLFLM 231
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 141-286 6.19e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.60  E-value: 6.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 141 SLTTFSMIIIIL---SITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLwMIYFMIYSIINLILIWSFYFFNL- 216
Cdd:PRK08668 267 GVPLFNYILAWLgniSIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSL-GFAGGLFHVFNHALFKGLFFLIFa 345

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938339400 217 --------NMISQLFNYGAHYNLVKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITvFFYL 286
Cdd:PRK08668 346 aviyrtgtTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGS-FLYV 422
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 104-288 6.01e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 41.68  E-value: 6.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 104 PFFFWFPEVMEG----LSWLNSFTLLtwqKLAPFMVI----SYCLSLTTFSMIIIILSITS--GALGGLNQTSTRKIMAF 173
Cdd:COG1009  229 PLHFWLPDAMEGptpvSALLHAATMV---KAGVYLLArlspLFALSPVWLTVVAIIGAITAlfAALIALAQTDIKRVLAY 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 174 SSINHMGWMLMAISLSDSLWMIYFMIY-------------SIInliliwsfyffnLNMISQ-LFNYGahyNLVK------ 233
Cdd:COG1009  306 STVSQLGYMFLALGVGAYVAALFHLLThaffkallflgagSVI------------HATGTRdIRKMG---GLRKkmpita 370

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 938339400 234 LLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNL--MILSMVMLIMSIITVFFYLRL 288
Cdd:COG1009  371 ITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGlgPLLLAVALLGAFLTAFYSFRL 427
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 140-288 4.04e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 4.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339400 140 LSLTTFSMIIIILSITSGALGGLNQTSTRKIMAFSSINHMGWMLMAISLSDSLWMIYFMIYsIINLILIWSFYFFNLNMI 219
Cdd:PRK12662 276 LPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAY-IVNHSIVKSALFMVSGSI 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938339400 220 SQLFNYGAHYNL---------VKLLIMINLLSLGGLPPFMGFFPKWMILQSMLQLNLMILSMVMLIMSIITVFFYLRL 288
Cdd:PRK12662 355 SYHFGTTKLEDClnlwksmpkITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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