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Conserved domains on  [gi|971746593|ref|YP_009200609|]
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Gp2.5-like ssDNA binding protein and ssDNA annealing protein [Escherichia phage P483]

Protein Classification

DUF2815 family protein( domain architecture ID 10009714)

DUF2815 family protein similar to Enterobacteria phage T3 helix-destabilizing protein that binds preferentially to single-stranded DNA and is implicated in DNA replication, recombination, and repair

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA00458 PHA00458
single-stranded DNA-binding protein
 1-218 3.26e-141

single-stranded DNA-binding protein


:

Pssm-ID: 222800  Cd Length: 233  Bit Score: 394.55  E-value: 3.26e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 971746593   1 MAFNKRKVFTSARGVAEPYCYLAKPDFGSGDFKNERGVYKVSLTVSNDDPRCQKMIDEIVEAHETDYAARLEEYEANPPK 80
Cdd:PHA00458   1 MAFAKKKVFTTPIGTAEPYAYIAKPDFGNEGFFNPRGVYKVSLTVSNDDPRCQKMIDEIVKAHEENYAAALEEYEANPPK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 971746593  81 VVKGKKPLKPYVGDMPFMDNEDGTTTFNFKCYGSFTDKKTGENKPIDLAIVDSKGKRIRgERPAISGGSELKIKYTLFPY 160
Cdd:PHA00458  81 VQRGKKPLKPYEGDMPFFDNGDGTVTFKFKCYASYKDKKTGENKPIVLRVVDSKGKRIE-DVPAIGGGSKLKVKFSLFPY 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 971746593 161 GWSAVAGASVKLQLDSVMLIKLVEF-GGGEDDWADEVEEDGYEADEAQTRKPQNDSGWN 218
Cdd:PHA00458 160 KWNAAVGASVKLQLESVMLVELAEFgGGGEDDWADEDEEDGYVASEAKARKPQDEEEWD 218
 
Name Accession Description Interval E-value
PHA00458 PHA00458
single-stranded DNA-binding protein
 1-218 3.26e-141

single-stranded DNA-binding protein


Pssm-ID: 222800  Cd Length: 233  Bit Score: 394.55  E-value: 3.26e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 971746593   1 MAFNKRKVFTSARGVAEPYCYLAKPDFGSGDFKNERGVYKVSLTVSNDDPRCQKMIDEIVEAHETDYAARLEEYEANPPK 80
Cdd:PHA00458   1 MAFAKKKVFTTPIGTAEPYAYIAKPDFGNEGFFNPRGVYKVSLTVSNDDPRCQKMIDEIVKAHEENYAAALEEYEANPPK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 971746593  81 VVKGKKPLKPYVGDMPFMDNEDGTTTFNFKCYGSFTDKKTGENKPIDLAIVDSKGKRIRgERPAISGGSELKIKYTLFPY 160
Cdd:PHA00458  81 VQRGKKPLKPYEGDMPFFDNGDGTVTFKFKCYASYKDKKTGENKPIVLRVVDSKGKRIE-DVPAIGGGSKLKVKFSLFPY 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 971746593 161 GWSAVAGASVKLQLDSVMLIKLVEF-GGGEDDWADEVEEDGYEADEAQTRKPQNDSGWN 218
Cdd:PHA00458 160 KWNAAVGASVKLQLESVMLVELAEFgGGGEDDWADEDEEDGYVASEAKARKPQDEEEWD 218
 
Name Accession Description Interval E-value
PHA00458 PHA00458
single-stranded DNA-binding protein
 1-218 3.26e-141

single-stranded DNA-binding protein


Pssm-ID: 222800  Cd Length: 233  Bit Score: 394.55  E-value: 3.26e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 971746593   1 MAFNKRKVFTSARGVAEPYCYLAKPDFGSGDFKNERGVYKVSLTVSNDDPRCQKMIDEIVEAHETDYAARLEEYEANPPK 80
Cdd:PHA00458   1 MAFAKKKVFTTPIGTAEPYAYIAKPDFGNEGFFNPRGVYKVSLTVSNDDPRCQKMIDEIVKAHEENYAAALEEYEANPPK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 971746593  81 VVKGKKPLKPYVGDMPFMDNEDGTTTFNFKCYGSFTDKKTGENKPIDLAIVDSKGKRIRgERPAISGGSELKIKYTLFPY 160
Cdd:PHA00458  81 VQRGKKPLKPYEGDMPFFDNGDGTVTFKFKCYASYKDKKTGENKPIVLRVVDSKGKRIE-DVPAIGGGSKLKVKFSLFPY 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 971746593 161 GWSAVAGASVKLQLDSVMLIKLVEF-GGGEDDWADEVEEDGYEADEAQTRKPQNDSGWN 218
Cdd:PHA00458 160 KWNAAVGASVKLQLESVMLVELAEFgGGGEDDWADEDEEDGYVASEAKARKPQDEEEWD 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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