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Conserved domains on  [gi|971760193|ref|YP_009213498|]
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Arc-like repressor [Rhodobacter phage RcRhea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHH_3 super family cl15010
Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain ...
 35-77 9.79e-03

Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.


The actual alignment was detected with superfamily member pfam12651:

Pssm-ID: 289422  Cd Length: 44  Bit Score: 30.72  E-value: 9.79e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 971760193  35 KAQFNVRIAQENAVYARVLAAKTGRPLHEIVEEAIALLADKYG 77
Cdd:pfam12651  2 KTRTTVSIDPELAEKLKALSEKTRIPRSKLLDEAIELLLEKYE 44
 
Name Accession Description Interval E-value
RHH_3 pfam12651
Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain ...
 35-77 9.79e-03

Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.


Pssm-ID: 289422  Cd Length: 44  Bit Score: 30.72  E-value: 9.79e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 971760193  35 KAQFNVRIAQENAVYARVLAAKTGRPLHEIVEEAIALLADKYG 77
Cdd:pfam12651  2 KTRTTVSIDPELAEKLKALSEKTRIPRSKLLDEAIELLLEKYE 44
 
Name Accession Description Interval E-value
RHH_3 pfam12651
Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain ...
 35-77 9.79e-03

Ribbon-helix-helix domain; This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.


Pssm-ID: 289422  Cd Length: 44  Bit Score: 30.72  E-value: 9.79e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 971760193  35 KAQFNVRIAQENAVYARVLAAKTGRPLHEIVEEAIALLADKYG 77
Cdd:pfam12651  2 KTRTTVSIDPELAEKLKALSEKTRIPRSKLLDEAIELLLEKYE 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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