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Conserved domains on  [gi|1002160259|ref|YP_009230403|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Ara ararauna]

Protein Classification

ND4L family protein( domain architecture ID 10009575)

ND4L family protein

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.14e-40

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177184  Cd Length: 98  Bit Score: 129.20  E-value: 1.14e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVA 80
Cdd:MTH00125   1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                         90
                 ....*....|....*...
gi 1002160259 81 STRTHGSDHLQNLNLLQC 98
Cdd:MTH00125  81 TTRTHGSDHLKNLNLLQC 98
 
Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.14e-40

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 129.20  E-value: 1.14e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVA 80
Cdd:MTH00125   1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                         90
                 ....*....|....*...
gi 1002160259 81 STRTHGSDHLQNLNLLQC 98
Cdd:MTH00125  81 TTRTHGSDHLKNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-98 1.42e-14

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 62.97  E-value: 1.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259 11 AFALSSLGLAFHRvHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTHGSDHL 90
Cdd:pfam00420  9 LFLIGLYGLLLRR-NLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*...
gi 1002160259 91 QNLNLLQC 98
Cdd:pfam00420 88 DSLNLLKG 95
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 11-96 3.65e-04

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 36.19  E-value: 3.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259 11 AFALSSLGL--AFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTHGSD 88
Cdd:COG0713   10 AAILFAIGLygVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVALYRNRGTI 89


                 ....*...
gi 1002160259 89 HLQNLNLL 96
Cdd:COG0713   90 DVDDLNEL 97
 
Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.14e-40

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 129.20  E-value: 1.14e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVA 80
Cdd:MTH00125   1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                         90
                 ....*....|....*...
gi 1002160259 81 STRTHGSDHLQNLNLLQC 98
Cdd:MTH00125  81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-98 9.46e-38

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 122.02  E-value: 9.46e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVA 80
Cdd:MTH00067   1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVA 80

                         90
                 ....*....|....*...
gi 1002160259 81 STRTHGSDHLQNLNLLQC 98
Cdd:MTH00067  81 TTRTHGTDHLKNLNLLQC 98
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.59e-37

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 121.23  E-value: 1.59e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVA 80
Cdd:MTH00126   1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                         90
                 ....*....|....*...
gi 1002160259 81 STRTHGSDHLQNLNLLQC 98
Cdd:MTH00126  81 TARTHGTDRLQNLNLLQC 98
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.35e-24

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 88.06  E-value: 2.35e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVA 80
Cdd:MTH00107   1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPIILLVFAACEAAVGLALLVM 80

                         90
                 ....*....|....*...
gi 1002160259 81 STRTHGSDHLQNLNLLQC 98
Cdd:MTH00107  81 VSNTYGTDYVQNLNLLQC 98
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 6-96 1.74e-19

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 75.37  E-value: 1.74e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  6 LSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTH 85
Cdd:MTH00181   3 FVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRTH 82

                         90
                 ....*....|.
gi 1002160259 86 GSDHLQNLNLL 96
Cdd:MTH00181  83 GSDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-97 2.84e-17

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 69.95  E-value: 2.84e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVA 80
Cdd:MTH00043   1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                         90
                 ....*....|....*..
gi 1002160259 81 STRTHGSDHLQNLNLLQ 97
Cdd:MTH00043  81 LSRNHNSDLVASLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-98 1.42e-14

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 62.97  E-value: 1.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259 11 AFALSSLGLAFHRvHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTHGSDHL 90
Cdd:pfam00420  9 LFLIGLYGLLLRR-NLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*...
gi 1002160259 91 QNLNLLQC 98
Cdd:pfam00420 88 DSLNLLKG 95
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 1-98 5.12e-11

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 54.21  E-value: 5.12e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSL-GLAFHRVHLVSALLCLESMMLSMYIALSTWPVEnqTPSSSLTPILMLTFSACEAGTGLAMLV 79
Cdd:MTH00188   1 MFFSMILVILLFVVLGLfTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSY--MEKELYLSLVLLTFAACEASVGLALLV 78

                         90
                 ....*....|....*....
gi 1002160259 80 ASTRTHGSDHLQNLNLLQC 98
Cdd:MTH00188  79 SLIRSHGSDYVSSLNLIKC 97
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.27e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 45.22  E-value: 1.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  1 MSFLRLSFCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTwpVENQTPSSSLTPILMLTFSACEAGTGLAMLVA 80
Cdd:MTH00149   2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFS--SSGLISFSSYLFLIILTFGACEASLGLSLLVS 79

                         90
                 ....*....|....*...
gi 1002160259 81 STRTHGSDHLQNLNLLQC 98
Cdd:MTH00149  80 LIRLHGNDYVSSLSSLKF 97
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 12-97 5.83e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 43.48  E-value: 5.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259 12 FALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTHGSDHLQ 91
Cdd:MTH00180  13 FILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAVK 92


                 ....*.
gi 1002160259 92 NLNLLQ 97
Cdd:MTH00180  93 SLNLLR 98
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 12-92 8.78e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 42.83  E-value: 8.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259 12 FALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQtpSSSLTPILMLTFSACEAGTGLAMLVASTRTHGSDHLQ 91
Cdd:MTH00162  11 FFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFN--YELYFLLFFLTFSVCEGALGLSILVSMIRSHGNDYFS 88


                 .
gi 1002160259 92 N 92
Cdd:MTH00162  89 S 89
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 8-98 4.23e-06

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 41.28  E-value: 4.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  8 FCSAFALSSLGLAFHRVHLVSALLCLESMMLSMYIaLSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTHGS 87
Cdd:MTH00013   8 LSISPFISMFNLSLQRKHLLMSLLSLEAMILSLAL-FIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLMTRSYGN 86

                         90
                 ....*....|.
gi 1002160259 88 DHLQNLNLLQC 98
Cdd:MTH00013  87 DMLKSLTSNKC 97
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 56-98 9.93e-06

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 42.25  E-value: 9.93e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1002160259  56 SSLTPILMLTFSACEAGTGLAMLVASTRTHGSDHLQNLNLLQC 98
Cdd:MTH00127  390 SPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHT 432
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 12-97 1.14e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 40.43  E-value: 1.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259 12 FALSSLGLAFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTHGSDHLQ 91
Cdd:MTH00001  13 FLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISLK 92


                 ....*.
gi 1002160259 92 NLNLLQ 97
Cdd:MTH00001  93 SLNSLR 98
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 11-96 3.65e-04

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 36.19  E-value: 3.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259 11 AFALSSLGL--AFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTHGSD 88
Cdd:COG0713   10 AAILFAIGLygVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVALYRNRGTI 89


                 ....*...
gi 1002160259 89 HLQNLNLL 96
Cdd:COG0713   90 DVDDLNEL 97
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
12-96 7.48e-04

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 35.54  E-value: 7.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160259  12 FALSSLGLaFHRVHLVSALLCLESMMLSMYIALSTWPVENQTPSSSLTPILMLTFSACEAGTGLAMLVASTRTHGSDHLQ 91
Cdd:PRK05715   15 FCIGLVGL-LLRRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAILLQLYRNRGTIDVD 93


                  ....*
gi 1002160259  92 NLNLL 96
Cdd:PRK05715   94 DLNEL 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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