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Conserved domains on  [gi|1002160263|ref|YP_009230407|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Ara ararauna]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 7.33e-47

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 150.67  E-value: 7.33e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263   1 MTYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  81 VWGGW----YAVGYVLGLVPVGVGLVVWGWGGGFKVGTVDSAGVLFARLDFSGVALFYSCGAGMFLVAGWGLLLTLFVVL 156
Cdd:MTH00115   81 AWGDWgvvgYVVGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1002160263 157 EVVRGLSRGVIRAV 170
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 7.33e-47

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 150.67  E-value: 7.33e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263   1 MTYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  81 VWGGW----YAVGYVLGLVPVGVGLVVWGWGGGFKVGTVDSAGVLFARLDFSGVALFYSCGAGMFLVAGWGLLLTLFVVL 156
Cdd:MTH00115   81 AWGDWgvvgYVVGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1002160263 157 EVVRGLSRGVIRAV 170
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-157 2.63e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 50.19  E-value: 2.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  17 LLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQVWGGWYAVGYVLGLVP 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002160263  97 VGVGLVVWGWGGGFKVGTVDSAGVLFARLDFSGVALFYScGAGMFLVAGWGLLLTLFVVLE 157
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIV 140
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 7.33e-47

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 150.67  E-value: 7.33e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263   1 MTYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  81 VWGGW----YAVGYVLGLVPVGVGLVVWGWGGGFKVGTVDSAGVLFARLDFSGVALFYSCGAGMFLVAGWGLLLTLFVVL 156
Cdd:MTH00115   81 AWGDWgvvgYVVGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1002160263 157 EVVRGLSRGVIRAV 170
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-170 1.32e-44

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 144.90  E-value: 1.32e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263   1 MTYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  81 VWGGWYAVGYVLGLVPVGVGLVVWGWGGGFKV--GTVDSAGVLFA-RLDFSGVALFYSCGAGMFLVAGWGLLLTLFVVLE 157
Cdd:MTH00138   81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGswVVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 1002160263 158 VVRGLSRGVIRAV 170
Cdd:MTH00138  161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-170 1.03e-40

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 134.98  E-value: 1.03e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263   1 MTYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00065    1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  81 VWGGWYAVGYVLGLVPVGVGLVVWGWGGGFKVG--TVDSAGVLFARLDFSGVALFYSCGAGMFLVAGWGLLLTLFVVLEV 158
Cdd:MTH00065   81 AWGSWSVLVYVLFYLLLLIVGYILFGCNFSLEFlfTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                         170
                  ....*....|..
gi 1002160263 159 VRGLSRGVIRAV 170
Cdd:MTH00065  161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-161 2.32e-24

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 92.94  E-value: 2.32e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263   1 MTYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00109    2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  81 VWGGWYAVGYVLGLVPVGVGLVVWGWGGGFKVGTV------------DSAGVLFARLDFSGVALFYSCGAGMFLVAGWGL 148
Cdd:MTH00109   82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVEVVfnfnglgdwviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                         170
                  ....*....|...
gi 1002160263 149 LLTLFVVLEVVRG 161
Cdd:MTH00109  162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-170 1.61e-21

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 85.43  E-value: 1.61e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263   1 MTYFLVFLGVSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00214    1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  81 VWGGWYAVGYVLGLVPVGVGLVVWGWGGGFKVGTVdsAGVLFARLDFSGVALFYSCGAGMFLVAGWGLLLTLFVVLEVVR 160
Cdd:MTH00214   81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWM--GVDEANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                         170
                  ....*....|
gi 1002160263 161 GLSRGVIRAV 170
Cdd:MTH00214  159 GLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 10-169 3.63e-13

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 63.39  E-value: 3.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  10 VSFILASLLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQVwggwyaVG 89
Cdd:MTH00045    8 ILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSV------SN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  90 YVLGLVPVGVGLVVWGWGGGFKVGTVDSAGVLFARLDFSGVALFYSCGAGMFLVAGWGLLLTLFVVLEVVRGLSRGVIRA 169
Cdd:MTH00045   82 LGEVLVLSLLLSLWVFISFDNFLELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-157 2.63e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 50.19  E-value: 2.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002160263  17 LLVASNPSPHYGVVGLVFGSIVGCGWLVSLGVSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQVWGGWYAVGYVLGLVP 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002160263  97 VGVGLVVWGWGGGFKVGTVDSAGVLFARLDFSGVALFYScGAGMFLVAGWGLLLTLFVVLE 157
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIV 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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