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Conserved domains on  [gi|1003725648|ref|YP_009237538|]
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replication associated protein [Lake Sarah-associated circular virus-40]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Viral_Rep super family cl03577
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 20-105 4.94e-16

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


The actual alignment was detected with superfamily member pfam02407:

Pssm-ID: 280553  Cd Length: 82  Bit Score: 72.60  E-value: 4.94e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003725648  20 SRTWCGTLNNysqgEYEFLVQEFNKVAEYWIIGKEKGQEGTPHLQMACSFTRAQKLNYLKQNLSVRAHWEITKGTLDQNR 99
Cdd:pfam02407   1 ARCWCFTLNN----PTEFLSLFSQDELKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPGRAHLEIARGSQEEAR 76


                  ....*.
gi 1003725648 100 VYCMKE 105
Cdd:pfam02407  77 DYCMKE 82
RNA_helicase super family cl46641
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 182-254 3.19e-09

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


The actual alignment was detected with superfamily member pfam00910:

Pssm-ID: 459992  Cd Length: 102  Bit Score: 53.76  E-value: 3.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003725648 182 IWIYGPSGTGKTRYV---------HEKELISNLWISGRDLRWWQSYDMEPAVLFDDFRGDFCK--YHELLRILDRYQCTV 250
Cdd:pfam00910   1 IWLYGPPGCGKSTLAkylarallkKLGLPKDSVYSRNPDDDFWDGYTGQPVVIIDDFGQNPDGpdEAELIRLVSSTPYPP 80


                  ....*....
gi 1003725648 251 -----ENKG 254
Cdd:pfam00910  81 pmaalEEKG 89
 
Name Accession Description Interval E-value
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 20-105 4.94e-16

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


Pssm-ID: 280553  Cd Length: 82  Bit Score: 72.60  E-value: 4.94e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003725648  20 SRTWCGTLNNysqgEYEFLVQEFNKVAEYWIIGKEKGQEGTPHLQMACSFTRAQKLNYLKQNLSVRAHWEITKGTLDQNR 99
Cdd:pfam02407   1 ARCWCFTLNN----PTEFLSLFSQDELKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPGRAHLEIARGSQEEAR 76


                  ....*.
gi 1003725648 100 VYCMKE 105
Cdd:pfam02407  77 DYCMKE 82
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 182-254 3.19e-09

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 53.76  E-value: 3.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003725648 182 IWIYGPSGTGKTRYV---------HEKELISNLWISGRDLRWWQSYDMEPAVLFDDFRGDFCK--YHELLRILDRYQCTV 250
Cdd:pfam00910   1 IWLYGPPGCGKSTLAkylarallkKLGLPKDSVYSRNPDDDFWDGYTGQPVVIIDDFGQNPDGpdEAELIRLVSSTPYPP 80


                  ....*....
gi 1003725648 251 -----ENKG 254
Cdd:pfam00910  81 pmaalEEKG 89
 
Name Accession Description Interval E-value
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 20-105 4.94e-16

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


Pssm-ID: 280553  Cd Length: 82  Bit Score: 72.60  E-value: 4.94e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003725648  20 SRTWCGTLNNysqgEYEFLVQEFNKVAEYWIIGKEKGQEGTPHLQMACSFTRAQKLNYLKQNLSVRAHWEITKGTLDQNR 99
Cdd:pfam02407   1 ARCWCFTLNN----PTEFLSLFSQDELKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPGRAHLEIARGSQEEAR 76


                  ....*.
gi 1003725648 100 VYCMKE 105
Cdd:pfam02407  77 DYCMKE 82
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 182-254 3.19e-09

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 53.76  E-value: 3.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003725648 182 IWIYGPSGTGKTRYV---------HEKELISNLWISGRDLRWWQSYDMEPAVLFDDFRGDFCK--YHELLRILDRYQCTV 250
Cdd:pfam00910   1 IWLYGPPGCGKSTLAkylarallkKLGLPKDSVYSRNPDDDFWDGYTGQPVVIIDDFGQNPDGpdEAELIRLVSSTPYPP 80


                  ....*....
gi 1003725648 251 -----ENKG 254
Cdd:pfam00910  81 pmaalEEKG 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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