NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1030177680|ref|YP_009252445|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Caryanda sp. ZH-2016]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-338 1.96e-98

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 294.04  E-value: 1.96e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   1 MNNNSKKLLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  81 KYLMSwesEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQmNNFIFAIVILSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 241 FLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVLLYTENSWFMNVKTKNLNLMLP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*...
gi 1030177680 321 VTIMISTMGLVLTSTLIF 338
Cdd:MTH00160  317 FLSFISLFGLILSSLLFL 334
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-338 1.96e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 294.04  E-value: 1.96e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   1 MNNNSKKLLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  81 KYLMSwesEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQmNNFIFAIVILSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 241 FLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVLLYTENSWFMNVKTKNLNLMLP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*...
gi 1030177680 321 VTIMISTMGLVLTSTLIF 338
Cdd:MTH00160  317 FLSFISLFGLILSSLLFL 334
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 5.74e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.48  E-value: 5.74e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  24 SNSWFGVWMGLEINLLSFTPMLTNNKNSMI-NESAIKYFIVQVMASTMLLFSILLI--------------QMKYLMSWES 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  89 EMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLL-MTWQKIAPMMIL-------SYCIQMNNFIFAIVILSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENI----WEIYFIIYSVLSMILTLLF-----KQTNLFFLNQIYTSSN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1030177680 232 MKTEIKFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 2.12e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.97  E-value: 2.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   8 LLFLSSLmmGTILSISSNSWFGVWMGLEINLLSF---TPMLTNNKNSmiNESAIKYFIVQVMASTMLLF----------S 74
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLYgisllygatgS 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  75 ILLIQMKYLMSWESEMVPSM-----MISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMIL--------- 140
Cdd:COG1007   183 LNLAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafp 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 141 SYCIQMNNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMIS-NENIWE---IYFIIYSVLSM----ILT 212
Cdd:COG1007   263 GLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgafaVIL 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 213 LL----FKQTNLFFLNQIYTSSNMKTeikFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYY 288
Cdd:COG1007   343 LLsrkgGEAEEIEDLAGLARRSPLLA---LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419


                  ....
gi 1030177680 289 YLRV 292
Cdd:COG1007   420 YLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-332 9.63e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 9.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  17 GTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMI-NESAIKYFIVQVMASTMLLFSILLI----------QMKYLMS 85
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  86 WESEMVPSM-----MISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIA---PMMILSYCIQMN------NFIF 151
Cdd:TIGR01770 194 NGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGfseawqIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 152 AIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGW-MISSMISNENIWE---IYFIIYSVLSMILTLLFKQTNLFFLNQIY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 228 TSSNMKTEIK------FMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVsfSALVLLY 301
Cdd:TIGR01770 354 YISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFD 431

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1030177680 302 TENSWFMNVKTknlNLMLPVTIMISTMGLVL 332
Cdd:TIGR01770 432 KPERRIPSNPQ---SKAQSLLLSISALFILF 459
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-338 1.96e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 294.04  E-value: 1.96e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   1 MNNNSKKLLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  81 KYLMSwesEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQmNNFIFAIVILSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 241 FLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVLLYTENSWFMNVKTKNLNLMLP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*...
gi 1030177680 321 VTIMISTMGLVLTSTLIF 338
Cdd:MTH00160  317 FLSFISLFGLILSSLLFL 334
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 7-337 9.35e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 205.83  E-value: 9.35e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   7 KLLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSIlLIQMKYLMSW 86
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSS-TTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  87 E----SEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNF--IFAIVILSIII 160
Cdd:MTH00112   85 DitqlTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPtlLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMM 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 241 FLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVLL--YTENSWFMNVKTKNLNLM 318
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLppNTTNMMMKWRTKPKKNTL 324

                         330
                  ....*....|....*....
gi 1030177680 319 LPVTIMISTMGLVLTSTLI 337
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMIL 343
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-337 2.82e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 199.30  E-value: 2.82e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   8 LLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQM---KYLM 84
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMysgQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  85 SWESEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMIL---SYCIQMnNFIFAIVILSIIIG 161
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINP-NLLLTLAILSILIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 162 AMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMF 241
Cdd:MTH00105  166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 242 LSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFS-ALVLLYTENSWFMN--VKTKNLNLM 318
Cdd:MTH00105  246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKwqFENTKPMTL 325

                         330
                  ....*....|....*....
gi 1030177680 319 LPVTIMISTMGLVLTSTLI 337
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLS 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-340 9.02e-60

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 195.53  E-value: 9.02e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   8 LLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILlIQMKYLMSW- 86
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGAL-IQAWLSGSWs 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  87 ---ESEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNFIFAIV--ILSIIIG 161
Cdd:MTH00041   86 ingPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILcgILSVLVG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 162 AMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMF 241
Cdd:MTH00041  166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 242 LSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVLLYTENS-----WFMNVKTKNLN 316
Cdd:MTH00041  246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSGNITVYG 325

                         330       340
                  ....*....|....*....|....
gi 1030177680 317 LMLPVTIMISTMGLVLTSTLIFTF 340
Cdd:MTH00041  326 VILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-340 2.50e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 194.37  E-value: 2.50e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  10 FLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILlIQMKYLMSWE-- 87
Cdd:MTH00070    9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSST-INAWFTGEWTim 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  88 --SEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILsycIQMN-----NFIFAIVILSIII 160
Cdd:MTH00070   88 nmQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALL---IQIShllnsNLLIIMGLLSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMM 240
Cdd:MTH00070  165 GGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMM 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 241 FLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVLLY--TENSWFMNVKTKNLNLM 318
Cdd:MTH00070  245 MLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpnTSNSKLYWRFKNKTNNL 324

                         330       340
                  ....*....|....*....|..
gi 1030177680 319 LPVTIMISTMGLVLTSTLIFTF 340
Cdd:MTH00070  325 LSLTIILSLMLLPITPTILNLF 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-340 1.52e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 179.39  E-value: 1.52e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   8 LLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQMKYLMSWE 87
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  88 SEMVPSM---MISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILS--YCIQMNNFIFAIVILSIIIGA 162
Cdd:MTH00200   87 SEMLGPLsetLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 163 MGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMFL 242
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 243 SLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVLLYTENSWFMNV--KTKNLNLMLP 320
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSwrTKSNSNLLVG 326

                         330       340
                  ....*....|....*....|
gi 1030177680 321 VTIMISTMGLVLTSTLIFTF 340
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLFLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-337 2.51e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 178.84  E-value: 2.51e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   9 LFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILL---IQMKYLMS 85
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  86 WESEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMmILSYCIQMNN--FIFAIVILSIIIGAM 163
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNptLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 164 GGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMFLS 243
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 244 LMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFsALVLLYTEN------SWFMnvKTKNLNL 317
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSY-AMTLTISPNtlngttPWRL--PSTQLTL 323

                         330       340
                  ....*....|....*....|
gi 1030177680 318 MLPVTIMISTMGLVLTSTLI 337
Cdd:MTH00135  324 PLAISTTATLMLLPLTPAIL 343
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-333 1.82e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 176.02  E-value: 1.82e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   9 LFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQMKYLMSWES 88
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  89 emvpSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNFIFAIVILSIIIGAMGGLNQ 168
Cdd:MTH00197   82 ----VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 169 TSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMFLSLMSIG 248
Cdd:MTH00197  158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 249 GLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVLLYTENSWFMNVKTKNLNLMLPVTIMISTM 328
Cdd:MTH00197  238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317


                  ....*
gi 1030177680 329 GLVLT 333
Cdd:MTH00197  318 MIFTM 322
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-338 4.93e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 174.69  E-value: 4.93e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   7 KLLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSIlLIQMKYLMSW 86
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGS-LIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  87 ESemvpSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNFIFAIVILSI---IIGAM 163
Cdd:MTH00144   85 FS----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLVGSI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 164 GGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMFLs 243
Cdd:MTH00144  161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISL- 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 244 LMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSALVllytenSWFMNVKTKNLNLMLPVTI 323
Cdd:MTH00144  240 LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLNSSII 313

                         330
                  ....*....|....*
gi 1030177680 324 MISTMGLVLTSTLIF 338
Cdd:MTH00144  314 SLNLLGGLLFLLLYL 328
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-295 7.61e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 158.79  E-value: 7.61e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   8 LLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQMKYLMSwe 87
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  88 sEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMN--NFIFAIVILSIIIGAMGG 165
Cdd:MTH00011   87 -KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNilPMMTSMAAMSALAGGLGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 166 LNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMFLSLM 245
Cdd:MTH00011  166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1030177680 246 SIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFS 295
Cdd:MTH00011  246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 5.74e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.48  E-value: 5.74e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  24 SNSWFGVWMGLEINLLSFTPMLTNNKNSMI-NESAIKYFIVQVMASTMLLFSILLI--------------QMKYLMSWES 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  89 EMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLL-MTWQKIAPMMIL-------SYCIQMNNFIFAIVILSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 161 GAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENI----WEIYFIIYSVLSMILTLLF-----KQTNLFFLNQIYTSSN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1030177680 232 MKTEIKFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-292 1.81e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 106.44  E-value: 1.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   8 LLFLSSLMmGTILSISSNSWFGVWMGLEI-NLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIqmkYLMS- 85
Cdd:PRK05777  107 LLVLFALL-GMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLL---YGATg 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  86 ----------WESEMVPSM-------MISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMIL-------- 140
Cdd:PRK05777  183 slsfagiakaLADGSGNSLlllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvaf 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 141 -SYCIQMNNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWM-----ISSMISNENIWeIYFIIYSVLSM----I 210
Cdd:PRK05777  263 gGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglaAGTAEGYSAVL-FYLLAYLFMTLgafgV 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 211 LTLLFKQ----TNLFFLNQIYTSSNMKTeikFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITL 286
Cdd:PRK05777  342 ISLLRRKggeaESISDFAGLSKRSPLLA---AVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGA 418


                  ....*.
gi 1030177680 287 YYYLRV 292
Cdd:PRK05777  419 FYYLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 2.12e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.97  E-value: 2.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   8 LLFLSSLmmGTILSISSNSWFGVWMGLEINLLSF---TPMLTNNKNSmiNESAIKYFIVQVMASTMLLF----------S 74
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLYgisllygatgS 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  75 ILLIQMKYLMSWESEMVPSM-----MISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMIL--------- 140
Cdd:COG1007   183 LNLAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafp 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 141 SYCIQMNNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMIS-NENIWE---IYFIIYSVLSM----ILT 212
Cdd:COG1007   263 GLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgafaVIL 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 213 LL----FKQTNLFFLNQIYTSSNMKTeikFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYY 288
Cdd:COG1007   343 LLsrkgGEAEEIEDLAGLARRSPLLA---LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419


                  ....
gi 1030177680 289 YLRV 292
Cdd:COG1007   420 YLRV 423
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-292 1.35e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 103.56  E-value: 1.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  16 MGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMIN-ESAIKYFIVQVMASTMLLFSILLI-------QMKYLMSWE 87
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFGCALLygltgetSIQGINSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  88 SEMVPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNFIFAIVILSIIIGAMGGLN 167
Cdd:MTH00199  188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALN 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 168 QTSLRHLLAYSSISHLGWMISSMI--SNENIWE--IYFIIYSVLSMILTLLFKQTNLF--FLNQIYTSSNMKTEIKFMMF 241
Cdd:MTH00199  268 QTKIKRLLAYSGIGHMGFILFGVAigSFESIQAslIYMIIYVIMSICSFSIILSLKLTkgLIVEVSGLSRKNPVIALTLA 347

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1030177680 242 LSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRV 292
Cdd:MTH00199  348 LTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-317 2.59e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.65  E-value: 2.59e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  16 MGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMIN-ESAIKYFIVQVMASTMLLFSILLI--------------QM 80
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGCALLcgttgglhlsyinlVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  81 KYLMSWESEMVP--SMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNFIFAIVILSI 158
Cdd:MTH00196   84 NSGQSFSSVSVPigYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 159 IIGAMGGLNQTSLRHLLAYSSISHLGWMISSmISNENIWEI-----YFIIYSVLSM--ILTLLFKQTNLFFLNQIYTSSN 231
Cdd:MTH00196  164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWG-IEIGSFESIqaslvYLFIYIIMSIcvFSIILALNVYKNLIIEFSGLSR 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 232 MKTEIKFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVsfsaLVLLYTENSWFMNVK 311
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI----VKILFFQANSFLLIS 318


                  ....*.
gi 1030177680 312 TKNLNL 317
Cdd:MTH00196  319 TKILKK 324
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-332 9.63e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 9.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  17 GTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMI-NESAIKYFIVQVMASTMLLFSILLI----------QMKYLMS 85
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGISLIygftgslnfeDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  86 WESEMVPSM-----MISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIA---PMMILSYCIQMN------NFIF 151
Cdd:TIGR01770 194 NGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGfseawqIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 152 AIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGW-MISSMISNENIWE---IYFIIYSVLSMILTLLFKQTNLFFLNQIY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 228 TSSNMKTEIK------FMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVsfSALVLLY 301
Cdd:TIGR01770 354 YISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFD 431

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1030177680 302 TENSWFMNVKTknlNLMLPVTIMISTMGLVL 332
Cdd:TIGR01770 432 KPERRIPSNPQ---SKAQSLLLSISALFILF 459
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-292 1.08e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 83.27  E-value: 1.08e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  10 FLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQ-------MKY 82
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYgatgtlnMAD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  83 LMSWESEMVPSMMISSSLL------VKMGAAPFHSWFPEVMGTSEWNNCLLL---MTwqKIAPMMIL---------SYCI 144
Cdd:COG0651   192 LAARLAELDPGLLLAAFALllvgfgIKAALFPLHFWLPDAYPAAPSPVSALLsglLT--KVGVYAILrvltllfgaDPAL 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 145 QMNNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSM-ISNENIWE--IYFIIYSVLSMilTLLF------ 215
Cdd:COG0651   270 FLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAgaLFHLLNHALAK--ALLFlaagai 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 216 ----KQTNLFFLNQIYTSSNMkteIKFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLR 291
Cdd:COG0651   348 eratGTRDLDKLGGLGKRMPL---TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424


                  .
gi 1030177680 292 V 292
Cdd:COG0651   425 I 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-292 2.21e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.90  E-value: 2.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  16 MGTILSISSNSWFGVWMGLEINLLSFTPM---------LTNNKNSMINESAIKYFIVQVMASTMLLFSILL--------- 77
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFGCALyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  78 ----IQMKYLMSWESEM----VPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNF 149
Cdd:MTH00198  279 mlgtILSATLETTNIELrqgsLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 150 IFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI-----SSMISNENIWeIYFIIYSV-----LSMILTL------ 213
Cdd:MTH00198  359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsaGTYESLQASW-TYAVTYLVsalasFTVICTLeefgtr 437

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 214 ----LFKQTNLFFLNQI------YTSSNMKTEIKFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVI------ 277
Cdd:MTH00198  438 tptsRQRDGSFGNYNLVrrlvdlTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIyylval 517

                         330
                  ....*....|....*.
gi 1030177680 278 -MVMLTMITLYYYLRV 292
Cdd:MTH00198  518 fAIICTCISAFYYIRI 533
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-331 7.26e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.11  E-value: 7.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  55 ESAIKYFIVQVMASTMLLFSILLI-------QMKYLMSWESE------MVPSMMISSSLLVKMGAAPFHSWFPEV--MGT 119
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLygqygtlNMAYLAVKMSEnptvvaKIALALFIAGLAMKSGAVPVHMWLPDAypAAP 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 120 SEWNNCLLLMTWQKIAPMM-----ILSYCIQMNNFIFAIVI---LSIIIGAMGGLNQTSLRHLLAYSSISHLGWM----- 186
Cdd:PRK08376  252 SSISAMLLVIKQAGLYALArvlfsIYGPAINLATVGWVIIIlgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglg 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 187 -------------ISSMISNENIWEI--YFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMFLSLMSIGGLP 251
Cdd:PRK08376  332 vglaalgdpamasYGEIALAGGIYHIvnHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLP 411

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 252 PFLGFLPKWMVMQKMMEMNmTSLMVIMVMLTMITLYYYLRVSFSAlvLLYTENSWFMNVKTKNLNLMLPV---TIMISTM 328
Cdd:PRK08376  412 PFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTA--FFGPPSEKVMNVKEPPKPMLVPMlilAIAIIGM 488


                  ...
gi 1030177680 329 GLV 331
Cdd:PRK08376  489 GLF 491
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-292 2.02e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.35  E-value: 2.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  34 LEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLIQMK--YL-MSWESEMVPSM--------MISSSLLV 102
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgTLnMADLAGALAENptvvtafgFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 103 KMGAAPFHSWFPEVM-GTSEWNNCLLLMTWQKIAPMMI-----------LSYCIQMNNFIFAIVILSIIIGAMGGLNQTS 170
Cdd:PRK08375  215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALiriyftvfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 171 LRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMiltlLFKQTNLFFLNQIYTSSNMKT---------EIKFMM- 240
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHA----LMKGALFLAAGAIEVTYGTRRlselsglgrRMPLTAa 370

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1030177680 241 --FLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRV 292
Cdd:PRK08375  371 afAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
ndhB CHL00049
NADH dehydrogenase subunit 2
 103-336 3.32e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 57.71  E-value: 3.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 103 KMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMM--------ILSYCIQMNNFIFAIV-ILSIIIGAMGGLNQTSLRH 173
Cdd:CHL00049  227 KLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASAlatrifdiPFYFSSNEWHLLLEILaILSMILGNLIAITQTSMKR 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 174 LLAYSSISHLGWMISSMIS-NENIWEIYFIIYSVLSMILTL-LFKQTNLFFL----NQI--YTSSNMKTEI-KFMMFLSL 244
Cdd:CHL00049  307 MLAYSSIGQIGYVIIGIIVgDSNDGYASMITYMLFYIFMNLgTFACIVLFGLrtgtDNIrdYAGLYTKDPFlALSLALCL 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 245 MSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVsfsaLVLLYTENSWFMNVKTKNL---NLMLPV 321
Cdd:CHL00049  387 LSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI----IKLLMTGRNQEITPYVRNYrrsPLRSNN 462

                         250
                  ....*....|....*
gi 1030177680 322 TIMISTMGLVLTSTL 336
Cdd:CHL00049  463 SIELSMIVCVIASTI 477
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
54-292 1.04e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.21  E-value: 1.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  54 NESAIKYFIVQVMASTMLLFSILLIqmkYLMSWES----EMVPSMMISSSLLV-------------KMGAAPFHSWFPEV 116
Cdd:PRK02504  160 NEAALKYLLIGAASSAIFLYGSSLL---YGLSGGStqlsAIALALITSPSLGLalalvfviagiafKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 117 MGTSEWNNCLLLMTWQKIA----PMMILSYCI----QMNNFIF-AIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI 187
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFpsfdEQWKLLFtALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 188 SSMISNENIWEIYFIIYsvlsmILTLLFKQTNLF---FLNQIYTSSNMKTE----------IKFMMFLSLMSIGGLPPFL 254
Cdd:PRK02504  317 IGLVAGTEAGYASMVFY-----LLAYLFMNLGAFacvILFSLRTGTDQISDyaglyqkdplLTLGLSLCLLSLGGIPPLA 391

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1030177680 255 GFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRV 292
Cdd:PRK02504  392 GFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
55-295 6.28e-08

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 53.88  E-value: 6.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  55 ESAIKYFIVQVMASTMLLFSILL------------IQMKYLMSWESEMV--PSMMISSSLLVKMGAAPFHSWFPEVMGTS 120
Cdd:PRK06277  150 KAALKYMILGNVAGSILLLGIGFllastgtlnitdIHNALLVNPTSPVIygGLLLLIFGLLYGSGLPPFHTIKSDIYAKA 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 121 EWNNCLLLMTWQK---IAPMMI-------LSYCIQMNNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSM 190
Cdd:PRK06277  230 KPFGSALLQTFSKfvlVALMLVifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 191 -------ISNENIWEIYFIIY-SVLSMILTLLFKQTNLFFLNQIYTSSNMKTEIKFMMFLSLMSIGGLPPFLGFLPKWMV 262
Cdd:PRK06277  310 algtplgIVAGIFHAINHVIYkSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLML 389

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1030177680 263 MQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFS 295
Cdd:PRK06277  390 AQAAMQANMPELAIIMIIVSIGTFVSMMKAFYL 422
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
150-296 1.07e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.03  E-value: 1.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 150 IFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMIL-TLLF----------KQT 218
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVkTALFliagslvrltGYR 354

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1030177680 219 NLFFLNQIYTSSNMKTEIKFMMFLSlmsIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFSA 296
Cdd:PRK12663  355 SLQYLGGLYRKEPLFGALFLILIFA---IGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 149-295 1.66e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 49.58  E-value: 1.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 149 FIFAIVIL---SIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIWEIYFIIYSVLSMIL-TLLFKQTNLFF-- 222
Cdd:PRK12667  294 LSPILIILgavSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAkSLLFLASGVFIha 373

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1030177680 223 -----LNQIYTSSNMKTEIKFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLRVSFS 295
Cdd:PRK12667  374 agtrdIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 145-264 1.74e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 49.58  E-value: 1.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 145 QMNNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSmISNENIWEIYFIIYSVLSMILTllfkQTNLFFL- 223
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFG-IALSTVAGLSGAIYYVAHHITV----QTTLFLVv 345

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1030177680 224 ----NQIYTSS--NMKTEIK------FMMFLSLMSIGGLPPFLGFLPKWMVMQ 264
Cdd:PRK12665  346 glieRQAGSSSlrRLGGLAKaspllaVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 95-296 1.89e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 49.18  E-value: 1.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  95 MISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNFIFAIV----ILSIIIGAMGGLNQTS 170
Cdd:PRK07234  189 LIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVrifgVGTALLGVLFALLEKD 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 171 LRHLLAYSSISHLGWMISSMIsnenIWEIYFIIYSvlsmiltlLFKQTnLFFLNQIYTSSNMKTEIKFM------MFLSL 244
Cdd:PRK07234  269 LKRMLAFSTISQLGFILAAPL----VGGLYALAHG--------LVKST-LFLCAGALPSRNFTELISQMlgigkwIPLTM 335

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1030177680 245 --MSIGGLPPFLGFLPKWMVMQKMMEMNMTsLMVIMVMLTMITLYYYLRVSFSA 296
Cdd:PRK07234  336 asFSIAGFPLLAGFVSKVLTLKNLLPWQAI-ALNLAAVGTAASFWKFIFLPFSA 388
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-338 9.37e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 47.12  E-value: 9.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   3 NNSKKLLFLSSLMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLI---- 78
Cdd:PRK06589  114 SSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILiytk 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  79 ------QMKYLMSWESEMVPSMMISSsLLVKMGAAPFHSWFPEVMGTSEWNNCLL---------LMTWQKIAPMM----I 139
Cdd:PRK06589  194 tgnldfVSGGLFSKNQSIILLLMFIY-GIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIfglsY 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 140 LSYCIQMNNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI--SSMISNENIWEIYFIIYSVLSMILTLLFKQ 217
Cdd:PRK06589  273 LQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILHLVSHSFAKICLFYSM 352

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 218 TNLF------FLNQIYTSSNMKTEIKFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVML----TMITLY 287
Cdd:PRK06589  353 GSIYslkkedQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSAL 432

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1030177680 288 YYLRVSFSALVLLYTENSwfmnvktkNLNLMLPVTIMISTMGLVLTSTLIF 338
Cdd:PRK06589  433 YLLKILSSIYKPSLSENS--------FITKSLPYLMQISVITCCCALTLFY 475
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 56-187 4.47e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 44.93  E-value: 4.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  56 SAIKYFIVQVMASTMLLFSILLIQMKYLMSW--ESEMVPSMMISSSLL----------VKMGAAPFHSWFPEVMGTSEWN 123
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTFdlLELLNLPLPFGVQTWlflaffiafaVKVPLFPLHTWLPDAHVEAPTA 236

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1030177680 124 NCLLLM-TWQKIAPMMILSYCIQM--------NNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMI 187
Cdd:TIGR01972 237 GSVILAgVLLKMGTYGFLRFNLPLfpdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK12650 PRK12650
DUF4040 family protein;
91-298 8.04e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.65  E-value: 8.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  91 VPSMMISSSLLVKMGAAPFHSWFPEVMGTSEWNNCLL---LMTWQKIAPMMILSyCIQMNNFIFAIVILSI-----IIGA 162
Cdd:PRK12650  209 VVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFS-PVFHDVAVWNWLLIIVgmitaLMGA 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 163 MGGLNQTSLRHLLAYSSISHLGWMISSMisneNIWEIYFIIYSVLSMILTLLFKqTNLFFL-----NQIYT-------SS 230
Cdd:PRK12650  288 VFAVQKTDLKKLTAYSTVSQLGWIVATI----GVGTPFALTAAVVHTLAHALFK-SSLFMLigvvdHQAGTrdirrlgSL 362

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1030177680 231 NMKTEIKF-MMFLSLMSIGGLPPFLGFLPKWMVMQKMME-----MNMTSLMVIMVMLTMITLYYYLRVSFSALV 298
Cdd:PRK12650  363 WRRMPFTFvSVTIAALSMAAVPPLFGFVSKEGMLTAFLEapggnAGVVLLLVGAALGAVFTFAYSARLVLGAFV 436
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-324 1.54e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 43.45  E-value: 1.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   1 MNNNSKKLLFLSSLMMGTILSISSNSWFGVWMGLEINLL-SFTPMLTNNKNSmiNESAIKYFIVQVMASTMLLFSILLIQ 79
Cdd:PRK08668   94 TKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFsSFMMVPMGKKES--RKASLKYFVLSAIGAYAMLYAIFLIY 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  80 MKY--------------LMSWESEMVPSMMISSSLLVKMGAAPFHSWFPEV------------------MGTSEWNNCLL 127
Cdd:PRK08668  172 AKTgtfdfadisqglinDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAyseapqsfsavlsgqlskLGAYGFLLVLY 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 128 LMTWQKIAPMMILSYCIQMNNFIFAIV-ILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIwEIYFIIYSV 206
Cdd:PRK08668  252 VLPGTKLFSEFGTYRGVPLFNYILAWLgNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSL-GFAGGLFHV 330

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 207 LS--MILTLLFkqtnLFFLNQIYTSSnmKTEIK-------------FMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNM 271
Cdd:PRK08668  331 FNhaLFKGLFF----LIFAAVIYRTG--TTKISemggliekmpftfAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1030177680 272 TSLMVIMVMLTMITLYYYLRvsFSALVLLYTENSWFMNVKTKNLNLMLPVTIM 324
Cdd:PRK08668  405 PITAFMAFFGSIGSFLYVFR--PLAGVFLGQLPSDHKDVKEAPLPMLIPMAIL 455
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 57-184 1.98e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 39.68  E-value: 1.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  57 AIKYFIVQVMASTMLLFSIL---------------LIQMKYLMSWESEMVPSMMISssLLVKMGAAPFHSWFPEV----- 116
Cdd:COG1008   163 AIKFFLYTLAGSLLMLVAILalyflagaltfdiaeLAAAPLPLTAQLLLFLAFFIA--FAVKVPMFPFHTWLPDAhveap 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 117 -------------MGTS---EWNNCLLLMTWQKIAPMMIlsyciqmnnfIFAIVilSIIIGAMGGLNQTSLRHLLAYSSI 180
Cdd:COG1008   241 tagsvllagvllkMGGYgllRFALPLFPEASAYFAPLLA----------ALGVI--GIIYGALVALAQTDLKRLIAYSSV 308


                  ....
gi 1030177680 181 SHLG 184
Cdd:COG1008   309 SHMG 312
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 99-187 2.74e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.42  E-value: 2.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  99 SLLVKMGAAPFHSWFPEVMGTSEWNNCLLLM-TWQKIAPMMILSYCIQM--------NNFIFAIVILSIIIGAMGGLNQT 169
Cdd:PRK05846  220 AFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAgILLKMGAYGLLRFSLPLfpdashefAPIIITLGVIAIIYGALVALAQT 299

                          90
                  ....*....|....*...
gi 1030177680 170 SLRHLLAYSSISHLGWMI 187
Cdd:PRK05846  300 DIKKLIAYSSISHMGFVT 317
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-292 5.22e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 38.61  E-value: 5.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680   3 NNSKKLLFLSSLM---MGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINESAIKYFIVQVMASTMLLFSILLI- 78
Cdd:PRK06591  110 NNNRKSLFYGILLfahTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLl 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  79 ------QMKYLMSWESEMVPSMMISSSL-------LVKMGAAPFHSWfpeVMGTSEWNNCLLLMTWQKIAPMM------- 138
Cdd:PRK06591  190 sitgslNMTDIAAYLQEHTNSRIITIAIgffligaILKTAFFPMHFW---MMRAYNNTASVILVYLAGISTIIgiyiiyk 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 139 ----ILSYC---IQMNNFIFAIVILSIIIGAMGGLNQTSLRHLLAYSSISHLGWMISSMISNENIweiyfiiySVLSMIL 211
Cdd:PRK06591  267 ftyiIIGYEtikTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYVTENGI--------IILPSLL 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 212 TLLFKQTNLFFLNQIYTSSNMKTEIKFMMFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLYYYLR 291
Cdd:PRK06591  339 LADSINKIALFLIDAYNESYKREPNKVLIIIAIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYK 418


                  .
gi 1030177680 292 V 292
Cdd:PRK06591  419 M 419
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 14-287 8.42e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 37.54  E-value: 8.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  14 LMMGTILSISSNSWFGVWMGLEINLLSFTPMLTNNKNSMINesaikYFIVQVMASTMLLFSILLIQMKYLMswesemvps 93
Cdd:MTH00091    3 LSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNY-----FVLQESLGLLFLLFSFGYFQFLILM--------- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  94 mmisssllVKMGAAPFHSWFPEVMGTSEWNNCLLLMTWQKIAPMMILSYCIQMNNFIFAIVILSIIIGAMggLNQTSLRH 173
Cdd:MTH00091   69 --------MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKN 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 174 LLAYSSISHLGWMI-SSMISNENIWEIYFIIYSVLSMILTLLFKQTNLFFLNqiytssnmkteikfmmFLSLMSIGGLPP 252
Cdd:MTH00091  139 LLILSSTESFNWLIlSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVS----------------WETLLVFMNLPF 202

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1030177680 253 FLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMITLY 287
Cdd:MTH00091  203 SVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLS 237
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 91-284 8.46e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 37.85  E-value: 8.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680  91 VPSMMISSSLLVKMGAAPFH--SWFPEVMGTSEWN------NCLLLMTWQKIAPMMILSYCIQMNNF---IFAIVILSII 159
Cdd:PRK06459  159 VPLILASFGFIIKMGMMPFLvsEWLPIAHGNAPSNfsailsATMTLMGVYGILKMTILTQTIPIGYFgltILAIGAFSIL 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177680 160 IGAMGGLNQTSLRHLLAYSSISHLGWMISS----MISNENIWEI-YFIIYSVLSMILTLLFKQTNLFFLNQIYTSSNMKT 234
Cdd:PRK06459  239 FGALYAYVSENVKGLLAFSTIENNGAILVAlglyMVTKQLITSIeHFSLITVILYSFAHSVAKTGLFLSSGLQEKQSITY 318

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1030177680 235 EIKFM-------MFLSLMSIGGLPPFLGFLPKWMVMQKMMEMNMTSLMVIMVMLTMI 284
Cdd:PRK06459  319 SKKIRnrwielgLTLLASSLSGLLPNIGGVASWLLLESLFMFAYVLHNVISILFIVT 375
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH