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Conserved domains on  [gi|1030177685|ref|YP_009252455|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Caryanda sp. ZH-2016]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 8.92e-40

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 132.24  E-value: 8.92e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685   3 KMMIMALSNVMNINFIKLSHPMSMMLFIIFQTLLVGLLTGTIMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFQLKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685  83 IVIILTLIMWIITMFMLIIFDQMlildwfknsetMNLNKSINFQEMTLSMFKLYNNPTFIITMMMMIYLFLALIAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEM-----------SNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1030177685 163 NINQGPIRKMM 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 8.92e-40

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 132.24  E-value: 8.92e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685   3 KMMIMALSNVMNINFIKLSHPMSMMLFIIFQTLLVGLLTGTIMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFQLKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685  83 IVIILTLIMWIITMFMLIIFDQMlildwfknsetMNLNKSINFQEMTLSMFKLYNNPTFIITMMMMIYLFLALIAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEM-----------SNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1030177685 163 NINQGPIRKMM 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 8.92e-40

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 132.24  E-value: 8.92e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685   3 KMMIMALSNVMNINFIKLSHPMSMMLFIIFQTLLVGLLTGTIMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFQLKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685  83 IVIILTLIMWIITMFMLIIFDQMlildwfknsetMNLNKSINFQEMTLSMFKLYNNPTFIITMMMMIYLFLALIAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEM-----------SNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1030177685 163 NINQGPIRKMM 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-173 2.32e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 56.17  E-value: 2.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685   1 MFKMMIMALSNVMNINFIKLSHPMSMMLFIIFQTLLVGLLTGTIMESfWLSYILFLTFLGGMLVLFIYITSIASNEMFQL 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685  81 KSIVIILTLIMWIITMFMLIIFDQMLILDWFKNSetmnlnksinfqEMTLSMFKLYNNPTFIITMMMMIYLFLALIAVVK 160
Cdd:MTH00212   80 KKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNL------------KLELNVSKILSNNNIPILLFLGLILLIALLMVVK 147

                         170
                  ....*....|...
gi 1030177685 161 ITNINQGPIRKMM 173
Cdd:MTH00212  148 ICQYYKGPLRPFL 160
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 7.36e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 46.42  E-value: 7.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685   1 MFKMMIMALSNVMNINFIKLSHPMSMMLFIIFQTLLVGLLTGTIMeSFWLSYILFLTFLGGMLVLFIYITSIASNEMFQ- 79
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGs 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1030177685  80 -LKSIVIILTLIMWIITMFMLIIFDQMLILDWFKNSETMNLNKSINFQEMTLSMFKLYnnptfiitMMMMIYLFLALIAV 158
Cdd:MTH00152   80 nFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIF--------VFLAVLLLIVMVSV 151

                         170
                  ....*....|..
gi 1030177685 159 VKITNINQGPIR 170
Cdd:MTH00152  152 VKICYYEEGSLR 163
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 47-68 6.55e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 35.50  E-value: 6.55e-03
                          10        20
                  ....*....|....*....|..
gi 1030177685  47 SFwLSYILFLTFLGGMLVLFIY 68
Cdd:MTH00138   49 SF-LSLVLFLIYLGGMLVVFAY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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