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Conserved domains on  [gi|1035950726|ref|YP_009256206|]
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hypothetical protein 2 [Negev virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DiSB-ORF2_chro super family cl24918
Putative virion glycoprotein of insect viruses; This entry corresponds to putative ...
 61-115 1.74e-07

Putative virion glycoprotein of insect viruses; This entry corresponds to putative glycoproteins from chroparaviruses. It carries two putative disulfide bridges. No similarity can be found with any other glycoproteins outside this region.


The actual alignment was detected with superfamily member pfam16506:

Pssm-ID: 465149  Cd Length: 100  Bit Score: 48.94  E-value: 1.74e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1035950726  61 CLNVYRTNDYLFGECTLPPNCSEPSVVKLDKTFYGQETVVCHSSSRQDMSSEFEF 115
Cdd:pfam16506   1 CLSLLETNSLAFTDCELPASCGNVHAKQLDHGWYGSEVVLCYGTHRDRVSTSYNI 55
 
Name Accession Description Interval E-value
DiSB-ORF2_chro pfam16506
Putative virion glycoprotein of insect viruses; This entry corresponds to putative ...
 61-115 1.74e-07

Putative virion glycoprotein of insect viruses; This entry corresponds to putative glycoproteins from chroparaviruses. It carries two putative disulfide bridges. No similarity can be found with any other glycoproteins outside this region.


Pssm-ID: 465149  Cd Length: 100  Bit Score: 48.94  E-value: 1.74e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1035950726  61 CLNVYRTNDYLFGECTLPPNCSEPSVVKLDKTFYGQETVVCHSSSRQDMSSEFEF 115
Cdd:pfam16506   1 CLSLLETNSLAFTDCELPASCGNVHAKQLDHGWYGSEVVLCYGTHRDRVSTSYNI 55
 
Name Accession Description Interval E-value
DiSB-ORF2_chro pfam16506
Putative virion glycoprotein of insect viruses; This entry corresponds to putative ...
 61-115 1.74e-07

Putative virion glycoprotein of insect viruses; This entry corresponds to putative glycoproteins from chroparaviruses. It carries two putative disulfide bridges. No similarity can be found with any other glycoproteins outside this region.


Pssm-ID: 465149  Cd Length: 100  Bit Score: 48.94  E-value: 1.74e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1035950726  61 CLNVYRTNDYLFGECTLPPNCSEPSVVKLDKTFYGQETVVCHSSSRQDMSSEFEF 115
Cdd:pfam16506   1 CLSLLETNSLAFTDCELPASCGNVHAKQLDHGWYGSEVVLCYGTHRDRVSTSYNI 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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