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Conserved domains on  [gi|1070102228|ref|YP_009286660|]
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host range and adsorption protein [Citrobacter phage SH1]

Protein Classification

PHA00437 family protein( domain architecture ID 10009700)

PHA00437 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA00437 PHA00437
tail assembly protein
 19-106 6.07e-17

tail assembly protein


:

Pssm-ID: 222793  Cd Length: 94  Bit Score: 69.58  E-value: 6.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1070102228  19 SRPVEKAGKEVGKVVGGALGAGKQEIIQQEAPAPVVAAPPpaqvvDVPEQDKAEGEDEAQTESARKKARSGGKKALSVAR 98
Cdd:PHA00437   12 KKVTKSVSKPVVGAVAGALGGGKDAPPVVVAAAPPPAQIV-----EVPEKDDVETEDEAQTESGKKKARAGGKKSLSVAR 86


                  ....*...
gi 1070102228  99 SSGGGINI 106
Cdd:PHA00437   87 SSGGGINI 94
 
Name Accession Description Interval E-value
PHA00437 PHA00437
tail assembly protein
 19-106 6.07e-17

tail assembly protein


Pssm-ID: 222793  Cd Length: 94  Bit Score: 69.58  E-value: 6.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1070102228  19 SRPVEKAGKEVGKVVGGALGAGKQEIIQQEAPAPVVAAPPpaqvvDVPEQDKAEGEDEAQTESARKKARSGGKKALSVAR 98
Cdd:PHA00437   12 KKVTKSVSKPVVGAVAGALGGGKDAPPVVVAAAPPPAQIV-----EVPEKDDVETEDEAQTESGKKKARAGGKKSLSVAR 86


                  ....*...
gi 1070102228  99 SSGGGINI 106
Cdd:PHA00437   87 SSGGGINI 94
VirionAssem_T7 pfam11653
Bacteriophage T7 virion assembly protein; This family of proteins represents the gene product ...
 64-106 1.62e-08

Bacteriophage T7 virion assembly protein; This family of proteins represents the gene product 7.3 from T7 bacteriophage. The protein is localized to the tail and is thought to be important in virion assembly. Particles assembled in the absence of the protein fail to adsorb to cells.


Pssm-ID: 314509  Cd Length: 99  Bit Score: 47.95  E-value: 1.62e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1070102228  64 DVPEQDkAEGEDEAQTESARKKARSGGKKALSVARSSGGGINI 106
Cdd:pfam11653  58 DVPEKE-VSTEDEAQTESGRKKARAGGKKSLSVARSSGGGINI 99
 
Name Accession Description Interval E-value
PHA00437 PHA00437
tail assembly protein
 19-106 6.07e-17

tail assembly protein


Pssm-ID: 222793  Cd Length: 94  Bit Score: 69.58  E-value: 6.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1070102228  19 SRPVEKAGKEVGKVVGGALGAGKQEIIQQEAPAPVVAAPPpaqvvDVPEQDKAEGEDEAQTESARKKARSGGKKALSVAR 98
Cdd:PHA00437   12 KKVTKSVSKPVVGAVAGALGGGKDAPPVVVAAAPPPAQIV-----EVPEKDDVETEDEAQTESGKKKARAGGKKSLSVAR 86


                  ....*...
gi 1070102228  99 SSGGGINI 106
Cdd:PHA00437   87 SSGGGINI 94
VirionAssem_T7 pfam11653
Bacteriophage T7 virion assembly protein; This family of proteins represents the gene product ...
 64-106 1.62e-08

Bacteriophage T7 virion assembly protein; This family of proteins represents the gene product 7.3 from T7 bacteriophage. The protein is localized to the tail and is thought to be important in virion assembly. Particles assembled in the absence of the protein fail to adsorb to cells.


Pssm-ID: 314509  Cd Length: 99  Bit Score: 47.95  E-value: 1.62e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1070102228  64 DVPEQDkAEGEDEAQTESARKKARSGGKKALSVARSSGGGINI 106
Cdd:pfam11653  58 DVPEKE-VSTEDEAQTESGRKKARAGGKKSLSVARSSGGGINI 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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