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Conserved domains on  [gi|1073625663|ref|YP_009305331|]
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PsbN (chloroplast) [Oryza sativa]

Protein Classification

photosystem II protein N( domain architecture ID 10000016)

photosystem II protein N (or protein PsbN) may play a role in photosystem I and II biogenesis

Gene Symbol:  psbN
Gene Ontology:  GO:0016020
PubMed:  24619613|15100025

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbN CHL00020
photosystem II protein N
 1-43 4.44e-24

photosystem II protein N


:

Pssm-ID: 176963  Cd Length: 43  Bit Score: 83.20  E-value: 4.44e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1073625663  1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:CHL00020   1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43
 
Name Accession Description Interval E-value
psbN CHL00020
photosystem II protein N
 1-43 4.44e-24

photosystem II protein N


Pssm-ID: 176963  Cd Length: 43  Bit Score: 83.20  E-value: 4.44e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1073625663  1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:CHL00020   1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43
PsbN pfam02468
Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on ...
 1-43 2.28e-21

Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on the chloroplast genome. psbN is involved in photosystem II during photosynthesis, but its exact role is unknown.


Pssm-ID: 426789  Cd Length: 43  Bit Score: 76.56  E-value: 2.28e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1073625663  1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:pfam02468  1 MEPATVLSISIAAVLVAITGYSIYTAFGPPSKELRDPFEDHED 43
 
Name Accession Description Interval E-value
psbN CHL00020
photosystem II protein N
 1-43 4.44e-24

photosystem II protein N


Pssm-ID: 176963  Cd Length: 43  Bit Score: 83.20  E-value: 4.44e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1073625663  1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:CHL00020   1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43
PsbN pfam02468
Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on ...
 1-43 2.28e-21

Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on the chloroplast genome. psbN is involved in photosystem II during photosynthesis, but its exact role is unknown.


Pssm-ID: 426789  Cd Length: 43  Bit Score: 76.56  E-value: 2.28e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1073625663  1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:pfam02468  1 MEPATVLSISIAAVLVAITGYSIYTAFGPPSKELRDPFEDHED 43
psbN PRK13183
photosystem II reaction center protein PsbN;
1-43 6.93e-14

photosystem II reaction center protein PsbN;


Pssm-ID: 171884  Cd Length: 46  Bit Score: 57.74  E-value: 6.93e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1073625663  1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:PRK13183   4 MSPALSLAITILAILLALTGFGIYTAFGPPSKELDDPFDDHED 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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