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Conserved domains on  [gi|1128272599|ref|YP_009335926|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Tonkinacris sinensis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-443 2.14e-167

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 477.72  E-value: 2.14e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWLVHSLMFLSSFVFMVCVYSYCDLNMISYYFGIDYFSFSLILLSFWICSLMITSSVSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  81 LSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 161 IYFYVNTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 241 LGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1128272599 401 YSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGEYFF 443
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-443 2.14e-167

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 477.72  E-value: 2.14e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWLVHSLMFLSSFVFMVCVYSYCDLNMISYYFGIDYFSFSLILLSFWICSLMITSSVSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  81 LSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 161 IYFYVNTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 241 LGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1128272599 401 YSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGEYFF 443
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 9.97e-56

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 191.83  E-value: 9.97e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  48 ISYYFGIDYFSFSLILLSFWICSLMItsSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAI--LASWNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLL------FDFGSYYFMFYVFMIlAFLVKMPMFLVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGM------KFNYFWLSLSLFGGVIVSFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 276 YSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1128272599 356 AAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 2.89e-53

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 179.82  E-value: 2.89e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLLFDF------GSYYFMFYVF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnSSGLLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 187 MILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYFWLSLSLFGGVIVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1128272599 346 WWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 1.57e-47

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 169.74  E-value: 1.57e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  48 ISYYFGIDYFSFSLILLSfwicSLMITSSVSVYLSSYH--SNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLL 125
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLT----ALLTLLAILASWESIQkrVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYL 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 126 LILGWGyQPERLQAGIYLIFYTLFASLPLLLVLFKIYFY------VNTLYfPLLFDFGSYYFMFYVFMIlAFLVKMPMFL 199
Cdd:TIGR01972 145 LIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLgggtfdLLELL-NLPLPFGVQTWLFLAFFI-AFAVKVPLFP 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMK-FNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSS 278
Cdd:TIGR01972 222 LHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLyFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSS 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 279 VAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAP 358
Cdd:TIGR01972 302 ISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1128272599 359 PSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 382 GTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-443 2.14e-167

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 477.72  E-value: 2.14e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWLVHSLMFLSSFVFMVCVYSYCDLNMISYYFGIDYFSFSLILLSFWICSLMITSSVSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  81 LSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 161 IYFYVNTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 241 LGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1128272599 401 YSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGEYFF 443
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 47-444 2.52e-121

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 359.54  E-value: 2.52e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  47 MISYYFGIDYFSFSLILLSFWICSLMITSSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLL 126
Cdd:MTH00150   15 SLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 127 ILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLLFDFGSYYFM---FYVFMILAFLVKMPMFLVHLW 203
Cdd:MTH00150   95 ILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSmglWGLLVFLAFLVKLPMYPFHLW 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00150  175 LPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 284 MVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNL 363
Cdd:MTH00150  255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNL 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 364 VGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGEYFF 443
Cdd:MTH00150  335 LSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLF 414


                  .
gi 1128272599 444 V 444
Cdd:MTH00150  415 M 415
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-440 6.14e-120

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 357.13  E-value: 6.14e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWLVHS---LMFLSSFVFMVCVYSYCDLNMISYYFGIDYFSFSLILLSFWICSLMITSSV 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  78 SVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 158 LFKIYFYVNTLYFPLL-FDFGSYYF--MFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSsMEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 235 MKVISFLGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1128272599 395 TLYMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGE 440
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-444 1.01e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 343.89  E-value: 1.01e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWLVHSLMFLSSFVFMVCVYS-YCDLNMISYYFGIDYFSFSLILLSFWICSLMITSSVSV 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNsFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  80 YLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 160 KIYFYVNTLYFPLLFDFGSYYFMFYVFMI---LAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 237 VISFLGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 317 LSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1128272599 397 YMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGEYFFV 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-440 1.98e-106

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 322.92  E-value: 1.98e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLL--NNSWWL---VHSLMfLSSFVFMVCVYSYCDLNMISYYFGIDYFSFSLILLSFWICSLMITS 75
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLskPKFLWTnttTYSLL-IALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  76 SVSVYLSSYHSN--FFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLP 153
Cdd:MTH00124   80 SQNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 154 LLLVLFKIYFYVNTLYFPLLFDFGSY------YFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00124  160 LLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 228 GYGIFRVMKVISFLGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGH 307
Cdd:MTH00124  240 GYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFL 387
Cdd:MTH00124  320 GLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLA 399

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1128272599 388 SFFSAVYTLYMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGE 440
Cdd:MTH00124  400 TLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPE 452
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-437 6.49e-101

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 308.83  E-value: 6.49e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWLVHSLMFLSSFVFMVCVY-----SYCDLNMISYYFGIDYFSFSLILLSFWIC--SLMI 73
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFllnnhWSSSWHNLSLSLATDSLSSPLIILSCWLAplSLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  74 TSSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLP 153
Cdd:MTH00044   81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 154 LLLVLFKIYFYVNTLYFPLLF------DFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00044  161 LLISLIAIYSSSSSLSIPLSElnwltsLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 228 GYGIFRVMKVISFLGMKF-NYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIG 306
Cdd:MTH00044  241 GYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIF 386
Cdd:MTH00044  321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1128272599 387 LSFFSAVYTLYMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFL 437
Cdd:MTH00044  401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIII 451
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-443 2.98e-99

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 304.53  E-value: 2.98e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWL-----VHSLmFLSSFVFMVCVYSYCDLNMISYYFGIDYFSFSLILLSFWICSLMI-- 73
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLwtlttTNSL-IIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMIla 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  74 TSSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLP 153
Cdd:MTH00068   80 SQNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 154 LLLVLFKIYFYVNTLYFPLLFDFGSYYFM------FYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00068  160 LLIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 228 GYGIFRVMKVISFLGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGH 307
Cdd:MTH00068  240 GYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFL 387
Cdd:MTH00068  320 GLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLG 399

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1128272599 388 SFFSAVYTLYMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGEYFF 443
Cdd:MTH00068  400 TLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELIS 455
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-438 1.08e-94

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 292.61  E-value: 1.08e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   5 LLMIVFLTPLCLLNNSWWLVHSLMFLSSFVFMVCVYSYCDLNMIS--YYFGIDYFSFSLILLSFWICSLMITSSVSVYLS 82
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  83 SYHSNFFVFIVLF--LLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFK 160
Cdd:MTH00206   86 EPINRQRIYITLLivLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 161 IYFYVNTLYFPLL---FDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKV 237
Cdd:MTH00206  166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 238 ISFLGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 318 SNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1128272599 398 MYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLK 438
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILN 446
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-437 1.55e-93

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 289.87  E-value: 1.55e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWL-----VHSLMFlsSFVFMVCVYSYCDLNM-ISYYFGIDYFSFSLILLSFWICSLMI- 73
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLI--SLISLLLLNQPNDNSLnFSLLFFSDSLSTPLLILTTWLLPLMLm 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  74 -TSSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASL 152
Cdd:MTH00110   79 aSQHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 153 PLLLVLFKIY-------FYVNTLYFPLLFDFGSYYFMFYVFMiLAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLK 225
Cdd:MTH00110  159 PLLVALLYIQnnlgslnFLLLQLWAQPLPNSWSNNLLWLACM-MAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 226 LGGYGIFRVMKVISFLGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMI 305
Cdd:MTH00110  238 LGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMI 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 306 GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLI 385
Cdd:MTH00110  318 AHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMG 397

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1128272599 386 FLSFFSAVYTLYMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFL 437
Cdd:MTH00110  398 LNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-440 2.44e-84

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 266.05  E-value: 2.44e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWL-----VHSLMFLSSFVFMVCVYSYCDLNMISYYFGIDYFSFSLILLSFWICSLMITS 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  76 SVSVYLSSYHSNFFVFIVLF--LLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLP 153
Cdd:MTH00127   81 SQNHTAPEPINRQRMYITLLtsLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 154 LLLVLFKIYFYVNTL------YFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 228 GYGIFRVMKVISFLGMKFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1128272599 388 SFFSAVYTLYMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLFLKGE 440
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 9.97e-56

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 191.83  E-value: 9.97e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  48 ISYYFGIDYFSFSLILLSFWICSLMItsSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAI--LASWNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLL------FDFGSYYFMFYVFMIlAFLVKMPMFLVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGM------KFNYFWLSLSLFGGVIVSFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 276 YSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1128272599 356 AAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 2.89e-53

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 179.82  E-value: 2.89e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLLFDF------GSYYFMFYVF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnSSGLLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 187 MILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYFWLSLSLFGGVIVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1128272599 346 WWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 48-399 5.41e-51

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 179.63  E-value: 5.41e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  48 ISYYFGIDYFSFSLILLSFWIcsLMITSSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:PRK05846   74 ISYHLGVDGISLLLVVLTALL--TPLAVLASWEEIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 128 LGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKIYFYV-----NTLYFPLL---FDFGSYYFMFYVFMIlAFLVKMPMFL 199
Cdd:PRK05846  152 GVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYynatgTFDIADLLnlpLPPGVQYWLFLAFFI-AFAVKMPMFP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGM------KFNYFWLSLSLFGGVIVSFICFRQVDLKSL 273
Cdd:PRK05846  230 LHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFS-----LPLfpdashEFAPIIITLGVIAIIYGALVALAQTDIKKL 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 274 IAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSC 353
Cdd:PRK05846  305 IAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMA 384

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1128272599 354 NMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:PRK05846  385 SLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLY 430
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 89-399 7.96e-48

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 170.63  E-value: 7.96e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  89 FVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTL 168
Cdd:MTH00204  114 FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTT 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 169 -YFPLLFDFGSYYFMFYVFM--ILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMK- 244
Cdd:MTH00204  194 dYQILLNIKLPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEy 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 245 FNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYER 324
Cdd:MTH00204  274 FAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYER 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1128272599 325 LGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:MTH00204  354 HHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 89-399 1.28e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 170.23  E-value: 1.28e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  89 FVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTL 168
Cdd:MTH00217  111 FLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTT 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 169 YFPLL----FDFGSYYFMFYVFMiLAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGM 243
Cdd:MTH00217  191 DYQALcclkIEKELQYFIFLGFF-LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASE 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 244 KFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYE 323
Cdd:MTH00217  270 YFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYE 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1128272599 324 RLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:MTH00217  350 RHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 1.57e-47

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 169.74  E-value: 1.57e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  48 ISYYFGIDYFSFSLILLSfwicSLMITSSVSVYLSSYH--SNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLL 125
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLT----ALLTLLAILASWESIQkrVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYL 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 126 LILGWGyQPERLQAGIYLIFYTLFASLPLLLVLFKIYFY------VNTLYfPLLFDFGSYYFMFYVFMIlAFLVKMPMFL 199
Cdd:TIGR01972 145 LIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLgggtfdLLELL-NLPLPFGVQTWLFLAFFI-AFAVKVPLFP 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMK-FNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSS 278
Cdd:TIGR01972 222 LHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLyFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSS 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 279 VAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAP 358
Cdd:TIGR01972 302 ISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1128272599 359 PSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 382 GTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 52-397 2.42e-42

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 156.24  E-value: 2.42e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  52 FGIDYFSFSLILLSFWI--CSLMITSSVSVYLssyhSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILG 129
Cdd:MTH00226   98 FAVDGISIYFIILTGFIvpCSILISWHSVKYL----TKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 130 WGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLLFDF-----GSYYFMFYVFMILAFLVKMPMFLVHLWL 204
Cdd:MTH00226  174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMK-FNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00226  254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQnLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 284 MVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNL 363
Cdd:MTH00226  334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1128272599 364 VGE-LSLLNSIISWSSFSFLVLIFLsFFSAVYTLY 397
Cdd:MTH00226  414 IGEyLSILSSFNWNPIIGVFVCSGV-ILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 64-436 1.23e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 146.98  E-value: 1.23e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  64 LSFWICSLMITSSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYL 143
Cdd:MTH00094   39 FVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 144 IFYTLFASLPLLLVLFKIYFYVNTLYFPLLFDfgsyyFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:MTH00094  119 LFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLS-----WEMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLL 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 224 LKLGGYGIFRVMKVISFLgmkFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSL 303
Cdd:MTH00094  194 LKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMM 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 304 MIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLV 383
Cdd:MTH00094  271 MLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFF 350

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1128272599 384 LIFLSFFSAVYTLYMYSYSQHGSYFGGVYTCSLGYLREYHLLFLHWFPLNVLF 436
Cdd:MTH00094  351 IFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 113-368 1.19e-29

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 120.91  E-value: 1.19e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLILGWGYQpERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPL----LFDF-GSYYFMFYVFM 187
Cdd:PRK12561  113 FLMWELELVPVYLLISIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLaelgAKSYpLALELLLYAGF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 188 ILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGMKFNYFWLSLSLFGGVIVSFICFR 266
Cdd:PRK12561  192 LIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFA 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP-SMAL 345
Cdd:PRK12561  272 QDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPkTFAL 351

                         250       260
                  ....*....|....*....|....
gi 1128272599 346 wwFLLSS-CNMAAPPSLNLVGELS 368
Cdd:PRK12561  352 --FTASSmASLALPGMSGFVSELT 373
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 113-403 5.39e-27

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 112.16  E-value: 5.39e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLILGWGYqPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLLFDFGSYY-----FMFYVFM 187
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpgllLAAFALL 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 188 ILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkVISFLGMKFNYFW----LSLSLFGGVIVSFI 263
Cdd:COG0651   212 LVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRV--LTLLFGADPALFLgtllLVLGLLTMLVGALG 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 264 CFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSM 343
Cdd:COG0651   290 ALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLT 369

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1128272599 344 ALWWFLLSSCNMAAPPSLNLVGELSLLN-SIISWSSFSFLVLIFLSFFSAVYTLYMYSYSQ 403
Cdd:COG0651   370 AAAFLIGALALAGLPPLSGFVSKWLLLQaALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-367 7.52e-25

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 106.71  E-value: 7.52e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  53 GIDYFSFSLILLSFWICSLMItssVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLILGWGY 132
Cdd:PRK02546   84 GADGLSMPLILLTGFITTLAV---LAAWPVTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 133 QpERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPL----LFDFG-SYYFMFYVFMILAFLVKMPMFLVHLWLPKA 207
Cdd:PRK02546  161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMtalaAKDFGlGFQLLCYAGLLIAYGVKLPIVPLHTWLPDA 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 208 HVEAPISGSMILAGVLLKLGGYGIFRvMKViSFLGMKFNYFWLSLSLFGGVIV---SFICFRQVDLKSLIAYSSVAHMSM 284
Cdd:PRK02546  240 HGEATAPVHMLLAGILLKMGGYALLR-MNA-GMLPDAHAQFAPLLIVLGVVNIiyaALTSFAQRNLKRKIAYSSISHMGF 317

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 285 VIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLV 364
Cdd:PRK02546  318 VLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFV 397


                  ...
gi 1128272599 365 GEL 367
Cdd:PRK02546  398 AEL 400
ndhD CHL00011
NADH dehydrogenase subunit 4
 113-365 6.92e-23

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 100.79  E-value: 6.92e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLILGWGYQpERLQAGIYLIFYTLFASLPLLLVLFKIYFYVN---TLYFPLLFDfGSYYF----MFYV 185
Cdd:CHL00011  138 FIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGLYGSnepTLNFETLAN-QSYPValeiLFYI 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 186 FMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvISFLGMKFNYFWLSLSLFGGV-IV--SF 262
Cdd:CHL00011  216 GFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRIN--MELLPHAHSIFSPWLVIVGAIqIIyaAS 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 263 ICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPS 342
Cdd:CHL00011  294 TSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPK 373

                         250       260
                  ....*....|....*....|...
gi 1128272599 343 MalwWFLLSSCNMAappSLNLVG 365
Cdd:CHL00011  374 I---FTMFSSFSMA---SLALPG 390
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-338 2.47e-20

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 93.23  E-value: 2.47e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  48 ISYYFGIDYFSFSLILLSFWICSLMItssVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:PRK06473   71 LSYHLGVDGLSLPLLVLNSLLTLIAI---YSSDESIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 128 LGWGYQpERLQAGIYLIFYTLFASLpLLLVLFKIYFYV----NTLYFPLLFDF--GSYYFMFYVFMILAFLVKMPMFLVH 201
Cdd:PRK06473  148 AIWGGQ-RRGYAATKFLLYTAISGI-LILVSFLGLVWLsgasSFDYEPLRSHTlpLSTQLLLLAPILVGFGIKIPLVPFH 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYFWLSLSLFGGVIVSFIC-FRQVDLKSLIAYSSVA 280
Cdd:PRK06473  226 TWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIG 305

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1128272599 281 HMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473  306 HMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 20-393 3.73e-20

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 91.91  E-value: 3.73e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  20 SWWLVHSLMFLSSFVFMVCV--YSYCDLNMISYYFGIDYFSFSLILLSFWICSLMITSSVSVYLSSyhSNFFVFIVLFLL 97
Cdd:MTH00062    7 GFFLGFLLLLLFCLLYSSGVgcCILVVNNVFNGLFIFDSLSFYLILLVLFLGLYSQVMFYNLLSGV--SRFFLFLSLIFS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  98 IMLYCSFSSLSLlsfYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLLFDFG 177
Cdd:MTH00062   85 ILCFCVNNSLLF---WFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 178 SYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLgmkFNYFWLSLSLFGG 257
Cdd:MTH00062  162 SVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSG---SFLGYLFLCCLFS 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 258 VIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMI 337
Cdd:MTH00062  239 VFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGI 318

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1128272599 338 NLMPSMaLWWFLLSSCNMAA-PPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAV 393
Cdd:MTH00062  319 NGSLVL-RVIVVFSFLSLCSfPPTIQFFCEVFLVSSSFGVLVYLLFWCFYLFFGGLV 374
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-401 5.46e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 89.17  E-value: 5.46e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLIlGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLL---FDFGSYYFMFYVFMIL 189
Cdd:PRK08375  132 FVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagaLAENPTVVTAFGFVLL 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 190 AFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYFWLS----LSLFGGVIVSFICF 265
Cdd:PRK08375  211 ALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWllavLALLSMLVGSLAAL 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:PRK08375  291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAA 370

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1128272599 346 WWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFL-SFFSAVYTLYMYSY 401
Cdd:PRK08375  371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLAsSLLALLYFLRIWYR 427
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
113-365 1.33e-16

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 81.68  E-value: 1.33e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLILGWGYQpERLQAGIYLIFYTLFASLPLLLVLFKIYFyvntLYFPLLFDFGSYY---------FMF 183
Cdd:PRK07363  133 FLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVW----LSGSTSFDYDAIStqnlslntqLIL 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 184 YVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvISFLGMKFNYFWLSLSLFGGVIV--- 260
Cdd:PRK07363  208 LTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG--LQLFPQTWSLVAPGLAIIGTISViyg 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLM 340
Cdd:PRK07363  286 ALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPI 365

                         250       260
                  ....*....|....*....|....*
gi 1128272599 341 PSMALWWFLLSSCNMAAPPSLNLVG 365
Cdd:PRK07363  366 RGLPLTSALLVLAGMASAGIPGLVG 390
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-394 3.91e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 77.32  E-value: 3.91e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 144 IFYTLFASLPLLLVLFKIYFYVNTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:PRK12667  186 FLYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLV 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 224 LKLGGYGIFRVMKVISFLGMKFNYFWLSLS-------LFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWG 296
Cdd:PRK12667  266 VNVGAYAIIRFLYTIFGISPSLIDFRAALSpiliilgAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLG 345

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 297 CMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISW 376
Cdd:PRK12667  346 LAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES 425

                         250
                  ....*....|....*....
gi 1128272599 377 -SSFSFLVLIFLSFFSAVY 394
Cdd:PRK12667  426 gFYLPALVLLIASAISLVG 444
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 184-394 6.10e-15

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 76.51  E-value: 6.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 184 YVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIS------FLGMKFNYFWLsLSLfgg 257
Cdd:PRK06458  217 FVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaaigsdFPGRLLLIFGL-LSV--- 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 258 VIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMI 337
Cdd:PRK06458  293 LVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLL 372

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1128272599 338 NLMPSMAlWWFLLSSCNMA-APPSLNLVGEL----SLLNSIISWSSFSFLVLIFLSFFSAVY 394
Cdd:PRK06458  373 KVSPLTG-WGLMLGALAIAgMPPFGVFISEFliltAGLARGPLLIAILLLLLLTLAFAALVR 433
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 113-341 2.55e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 71.95  E-value: 2.55e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLILgWGYQPERLQAGIYLIFYTLFASLpLLLVLFKIYFYVNTLYFP-----LLFDFGSYYFMFYVFM 187
Cdd:PRK08668  124 YIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAIGAYA-MLYAIFLIYAKTGTFDFAdisqgLINDTSTGFALIVFLF 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 188 ILAF-LVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGM-----------KFNYFWLSLSLF 255
Cdd:PRK08668  202 LLAFgVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvpLFNYILAWLGNI 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 256 GGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK08668  282 SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGG 361


                  ....*.
gi 1128272599 336 MINLMP 341
Cdd:PRK08668  362 LIEKMP 367
PRK12646 PRK12646
DUF4040 family protein;
88-398 6.69e-12

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 67.47  E-value: 6.69e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  88 FFVFIVLFLLIMLyCSFSSLSLLSFYIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNT 167
Cdd:PRK12646  112 FYFYLTLFMFSMI-GIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGT 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 168 LYFPLLFD-----FGSYYFMFYVFMIL--AFlVKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKVIS 239
Cdd:PRK12646  191 NNITEILGqadhiKNHGLFIPMIFMFLlgAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 240 FLGMkFNYFWLSLSLFGGVIVSFICFRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGCMGSLSLMI--------- 305
Cdd:PRK12646  269 LSNM-YIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYVFVlfaalfhlm 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 306 GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALwWFLLSSCNMAAPPSLN-----------LVGELSLLNSII 374
Cdd:PRK12646  348 NHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLNgflskemfldaLTQTGQLSQFSL 426

                         330       340
                  ....*....|....*....|....
gi 1128272599 375 SWSSFSFLVLIFLSFFSAVYTLYM 398
Cdd:PRK12646  427 ISMIIIVFIGVIASIFTFTYALYM 450
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 91-369 3.03e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 65.52  E-value: 3.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  91 FIVLFLLIMLYCSFSSLSLLSFyIFFEASLVPTLLLILGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYF 170
Cdd:PRK08667  116 LTALFILSMLGVVASANTFSFL-FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFEL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 171 PLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYFWL 250
Cdd:PRK08667  195 SPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLIL 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 251 SLSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLM-----------IGHGLCSSGLFCLSN 319
Cdd:PRK08667  275 LAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAG 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1128272599 320 IIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSL 369
Cdd:PRK08667  355 SVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLL 404
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 181-399 6.46e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 64.01  E-value: 6.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 181 FMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SFLGMKFNYFWLSLSLFGGV 258
Cdd:PRK08676  206 GASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 259 IVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK08676  286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFR 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1128272599 339 LMPSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTLYMY 399
Cdd:PRK08676  366 LQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSFAIFL 426
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 188-324 9.27e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 60.35  E-value: 9.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 188 ILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYFWLSLSLFGgvivSFICFRQ 267
Cdd:PRK07234  191 ALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLE 266

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1128272599 268 VDLKSLIAYSSVAHMSMVIGGlmtmnwwGCMGSLsLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234  267 KDLKRMLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 7.22e-09

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 53.30  E-value: 7.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599   1 MLKYLLMIVFLTPLCLLNNSWWL-----VHSLMFLSSFVFMVCVYSYCDLNMISYYFGIDYFSFSLILLSFWICSLMIT- 74
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILa 80

                          90       100
                  ....*....|....*....|....*....
gi 1128272599  75 -SSVSVYLSSYHSNFFVFIVLFLLIMLYC 102
Cdd:pfam01059  81 sQKHLKSEPNNRQRTFIFLLILLQLFLIL 109
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-365 8.02e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 57.67  E-value: 8.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLiLGWGYQPERLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLL------FDFGSYYFMFYVF 186
Cdd:PRK12665  137 YVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldeLPSGTRTALFAVL 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 187 MIlAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIsFLGMKFNYFWLSLSLFGGVIVSFICFR 266
Cdd:PRK12665  216 LV-AFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILGAIA 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALW 346
Cdd:PRK12665  294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373

                         250
                  ....*....|....*....
gi 1128272599 347 WFLlsscnmaapPSLNLVG 365
Cdd:PRK12665  374 FFV---------PALNLGG 383
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 186-395 1.94e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 56.28  E-value: 1.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 186 FMILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI-----SFLGMKFNYFWLSLSLFGGVIV 260
Cdd:PRK12662  214 FIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVFG 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLM 340
Cdd:PRK12662  294 SVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSM 373

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1128272599 341 PSMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFL-SFFSAVYT 395
Cdd:PRK12662  374 PKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVgSGLSVIYV 429
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 187-362 2.88e-08

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 56.05  E-value: 2.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 187 MILAFL---VKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkVISFLGMK---FNYFWLSLSLFGGVIV 260
Cdd:PRK06521  213 FLLALFgfgAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGAPgwwWGVLVLALGAISAVLG 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGL-MTM----NWWGCMGSLSLM------IGHGLCSSGLFCLSNIIYERLGSRS 329
Cdd:PRK06521  291 VLYALAEHDLKRLLAYSTIENIGIIFVGLgLAMvfiaYGMPLLAALALTaalyhlLNHALFKSLLFLGAGAVLHATGTRD 370

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1128272599 330 LLINKGMINLMPSMAlWWFLLSSCNMAAPPSLN 362
Cdd:PRK06521  371 MEKLGGLIRRMPWTA-WAFLIGCLAISALPPLN 402
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 187-345 9.24e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 50.92  E-value: 9.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 187 MILAFLVKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYFWL--SLSLFGGVIVSFIC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 265 FRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371


                  .
gi 1128272599 345 L 345
Cdd:PRK08377  372 L 372
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-362 9.40e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.87  E-value: 9.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 113 YIFFEASLVPTLLLILGWGYQPERLQAGI-YLIFYTLFASLPLLLV--LFKIYFYVNTLYFPLLFDFGSYYF--MFYVFM 187
Cdd:PRK08376  147 FVFLEIMSIASYALVAFRNDTWEAIEAGIkYMFVGSLASSMVLLGIalLYGQYGTLNMAYLAVKMSENPTVVakIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 188 ILAFLVKMPMFLVHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVmkVISFLGMKFNYF---WL-----SLSLFGGV 258
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV--LFSIYGPAINLAtvgWViiilgCLTMFVGV 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 259 IVSFIcfrQVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGCM---GSLSLMIGHGLCSSGLFCLSNIIYERLG 326
Cdd:PRK08376  303 AMAVV---QKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIYETG 379

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1128272599 327 SRSLLINKGMINLMPsMALWWFLLSSCNMAAPPSLN 362
Cdd:PRK08376  380 TRNLNELGGLARTMP-KTTIAFLIGAAAIVGLPPFN 414
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 59-396 1.64e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 50.20  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  59 FSLILLSFWICSLMITSSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLIlGWGYQPERLQ 138
Cdd:PRK06589   88 FLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLS 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 139 AGIYLIFYTLFASLPLLL-VLFKIYFYVNTLYFPLLFDFGSYYFMFYVFMILAFLVKMPMFLVHLWLPKAHVEAPISGSM 217
Cdd:PRK06589  167 GGYKYLKILMISALLLFLpAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSAL 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 218 ILAGVLLKLGGYGIFRVMKVI---SFLGMKFNYF-WLS-LSLFGGVIVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTM 292
Cdd:PRK06589  247 LHAVIVVKTGLFCIYKILLYIfglSYLQRIFAEFnWLIfIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIL 326

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 293 NWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSCNMAAPPSLNLVGELSLL-- 370
Cdd:PRK06589  327 TPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILla 406

                         330       340
                  ....*....|....*....|....*....
gi 1128272599 371 ---NSIISWSSFSFLVLIFLSFFSAVYTL 396
Cdd:PRK06589  407 aseQNQPWLSIIVMLVVIASSILSALYLL 435
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 52-361 1.89e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 46.87  E-value: 1.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599  52 FGI----DYFSFSLILLSFWICSLMITSSVSVYLSSYHSNFFVFIVLFLLIMLYCSFSSLSLLSFYIFFEASLVPTLLLI 127
Cdd:PRK07691   69 FGIvfvaDMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLI 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 128 LGWGYQPErLQAGIYLIFYTLFASLPLLLVLFKIYFYVNTLYFPLLF---------DFGSYYFMFYVFMILaFLVKMPMF 198
Cdd:PRK07691  149 VIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISvkiaelsagQTGLITVVAILFLFV-FATKAGLF 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 199 LVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGMKFNYF---WLS-LSLFGGVIVSficFRQVDLKSLI 274
Cdd:PRK07691  227 PLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYlilILAlLTIIFGVIGA---VAYFDIKKII 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 275 AYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAlWWFLLSSCN 354
Cdd:PRK07691  304 IYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALS 382


                  ....*..
gi 1128272599 355 MAAPPSL 361
Cdd:PRK07691  383 LAGIPPL 389
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 200-362 3.84e-05

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 45.97  E-value: 3.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmkVISFLGMKFNYFWLSLSLFGGVIVSFI----CFRQVDLKSLIA 275
Cdd:PRK08042  199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 276 YSSVAHMSMVIGGL-----------MTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08042  275 YHTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 354

                         170
                  ....*....|....*...
gi 1128272599 345 LwWFLLSSCNMAAPPSLN 362
Cdd:PRK08042  355 I-AMLVGLMAMAALPPLN 371
PRK12650 PRK12650
DUF4040 family protein;
185-370 3.17e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 3.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 185 VFMILAFLVKMPMFLVHLWLPKAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKVisflgmkFNYFWLSLSLFGGV 258
Cdd:PRK12650  212 VLIAVAAFTKSAQFPFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMITAL 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 259 IVSFICFRQVDLKSLIAYSSVAHMsmviGGLMTMNWWGCMGSLSLMI----GHGLCSSGLFCLSNIIYERLGSRSLLINK 334
Cdd:PRK12650  285 MGAVFAVQKTDLKKLTAYSTVSQL----GWIVATIGVGTPFALTAAVvhtlAHALFKSSLFMLIGVVDHQAGTRDIRRLG 360

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1128272599 335 GMINLMPsMALWWFLLSSCNMAA-PPSLNLVGELSLL 370
Cdd:PRK12650  361 SLWRRMP-FTFVSVTIAALSMAAvPPLFGFVSKEGML 396
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
186-396 8.69e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.39  E-value: 8.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 186 FMILAFLVKMPMFLVHlWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI----SFLGMKFNYFWLSLSLFGGVIVS 261
Cdd:PRK12663  212 LFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqeRELLHPLLATMAAITMVIGALGA 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1128272599 262 FIcfrQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLSLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK12663  291 LA---YKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEP 367

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1128272599 342 SMALWWFLLSSCNMAAPPSLNLVGELSLLNSIISWSSFSFLVLIFLSFFSAVYTL 396
Cdd:PRK12663  368 LFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSL 422
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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