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Conserved domains on  [gi|1135523706|ref|YP_009344815|]
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hypothetical protein [Kibale red colobus virus 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15127 super family cl39118
multidrug efflux RND transporter permease subunit AcrB;
12-32 2.59e-04

multidrug efflux RND transporter permease subunit AcrB;


The actual alignment was detected with superfamily member PRK15127:

Pssm-ID: 185081 [Multi-domain]  Cd Length: 1049  Bit Score: 36.81  E-value: 2.59e-04
                           10        20
                   ....*....|....*....|.
gi 1135523706   12 FAINLIYVFLCVVAVYSAWSI 32
Cdd:PRK15127   877 YAISLIVVFLCLAALYESWSI 897
 
Name Accession Description Interval E-value
PRK15127 PRK15127
multidrug efflux RND transporter permease subunit AcrB;
12-32 2.59e-04

multidrug efflux RND transporter permease subunit AcrB;


Pssm-ID: 185081 [Multi-domain]  Cd Length: 1049  Bit Score: 36.81  E-value: 2.59e-04
                           10        20
                   ....*....|....*....|.
gi 1135523706   12 FAINLIYVFLCVVAVYSAWSI 32
Cdd:PRK15127   877 YAISLIVVFLCLAALYESWSI 897
2A0602 TIGR00915
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ...
 12-32 1.84e-03

The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]


Pssm-ID: 273335 [Multi-domain]  Cd Length: 1044  Bit Score: 34.32  E-value: 1.84e-03
                           10        20
                   ....*....|....*....|.
gi 1135523706   12 FAINLIYVFLCVVAVYSAWSI 32
Cdd:TIGR00915  876 YALSLLVVFLCLAALYESWSI 896
 
Name Accession Description Interval E-value
PRK15127 PRK15127
multidrug efflux RND transporter permease subunit AcrB;
12-32 2.59e-04

multidrug efflux RND transporter permease subunit AcrB;


Pssm-ID: 185081 [Multi-domain]  Cd Length: 1049  Bit Score: 36.81  E-value: 2.59e-04
                           10        20
                   ....*....|....*....|.
gi 1135523706   12 FAINLIYVFLCVVAVYSAWSI 32
Cdd:PRK15127   877 YAISLIVVFLCLAALYESWSI 897
PRK10555 PRK10555
multidrug efflux RND transporter permease AcrD;
12-32 1.79e-03

multidrug efflux RND transporter permease AcrD;


Pssm-ID: 182544 [Multi-domain]  Cd Length: 1037  Bit Score: 34.42  E-value: 1.79e-03
                           10        20
                   ....*....|....*....|.
gi 1135523706   12 FAINLIYVFLCVVAVYSAWSI 32
Cdd:PRK10555   875 YAISLLVVFLCLAALYESWSV 895
2A0602 TIGR00915
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ...
 12-32 1.84e-03

The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]


Pssm-ID: 273335 [Multi-domain]  Cd Length: 1044  Bit Score: 34.32  E-value: 1.84e-03
                           10        20
                   ....*....|....*....|.
gi 1135523706   12 FAINLIYVFLCVVAVYSAWSI 32
Cdd:TIGR00915  876 YALSLLVVFLCLAALYESWSI 896
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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