NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1150150753|ref|YP_009349763|]
View 

NADH dehydrogenase subunit 6 (mitochondrion) [Decma fissa]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-175 7.70e-36

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 122.22  E-value: 7.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753   3 NLSIMMSNLLNAIIFTQVNHPLAMTLIIILQTLIVSLTTGMMTSTFWFSYILFLVFLGGMLVLFINITSLASNELFSIPT 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753  83 KSLIITLFMMFIIIMISLISDsslwnlfsfneemNNMDNMFISLHNESNFLLTKLYNKPTDMITLMLVNFLFLTLIAIVK 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNS-------------EMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVK 147

                         170
                  ....*....|...
gi 1150150753 163 ITNIFQGPLRTKN 175
Cdd:MTH00166  148 ITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-175 7.70e-36

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 122.22  E-value: 7.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753   3 NLSIMMSNLLNAIIFTQVNHPLAMTLIIILQTLIVSLTTGMMTSTFWFSYILFLVFLGGMLVLFINITSLASNELFSIPT 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753  83 KSLIITLFMMFIIIMISLISDsslwnlfsfneemNNMDNMFISLHNESNFLLTKLYNKPTDMITLMLVNFLFLTLIAIVK 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNS-------------EMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVK 147

                         170
                  ....*....|...
gi 1150150753 163 ITNIFQGPLRTKN 175
Cdd:MTH00166  148 ITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-175 7.70e-36

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 122.22  E-value: 7.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753   3 NLSIMMSNLLNAIIFTQVNHPLAMTLIIILQTLIVSLTTGMMTSTFWFSYILFLVFLGGMLVLFINITSLASNELFSIPT 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753  83 KSLIITLFMMFIIIMISLISDsslwnlfsfneemNNMDNMFISLHNESNFLLTKLYNKPTDMITLMLVNFLFLTLIAIVK 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNS-------------EMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVK 147

                         170
                  ....*....|...
gi 1150150753 163 ITNIFQGPLRTKN 175
Cdd:MTH00166  148 ITNIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-172 1.06e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 54.24  E-value: 1.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753   1 MLNLSIMMSNLLNAIIFTQVNHPLAMTLIIILQTLIVSLTTGMMTStFWFSYILFLVFLGGMLVLFINITSLASNE-LFS 79
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESN-SWYGYILFLIYIGGLLVLFGYMVALSPNEhLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753  80 IPTKSLIITLFMMFIIIMISLISDSSlwnlfsfneemnnmdNMFISLHNESNFLLTKLYNKPTDMITLMLVNFLFLTLIA 159
Cdd:MTH00212   80 KKYFKGFGMILISLNLYLLLMTLGSS---------------NFSPMLNLKLELNVSKILSNNNIPILLFLGLILLIALLM 144

                         170
                  ....*....|...
gi 1150150753 160 IVKITNIFQGPLR 172
Cdd:MTH00212  145 VVKICQYYKGPLR 157
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-172 4.52e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 47.19  E-value: 4.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753   1 MLNLSIMMSNLLNAIIFTQVNHPLAMTLIIILQTLIVSLTTGMMTStFWFSYILFLVFLGGMLVLFINITSLASNELFSI 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLS-SWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150753  81 PTKSLIITLFMMFIIIMISLIsdsslwnlFSFNEEMNNMDNMFISLHNESNFLLTKLYNKPTDMITLMLVNFLFLTLIAI 160
Cdd:MTH00152   80 NFKFVFFSLTLFGFLGLFFFF--------LYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSV 151

                         170
                  ....*....|..
gi 1150150753 161 VKITNIFQGPLR 172
Cdd:MTH00152  152 VKICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH