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Conserved domains on  [gi|1197511360|ref|YP_009368037|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Lepilemur fleuretae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-347 6.44e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 461.24  E-value: 6.44e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   2 KPTILALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 162 ILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 242 LTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQITK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321

                         330       340
                  ....*....|....*....|....*.
gi 1197511360 322 QTQLMPPLIVLSTLSLPLSPTFSILH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-347 6.44e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 461.24  E-value: 6.44e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   2 KPTILALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 162 ILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 242 LTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQITK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321

                         330       340
                  ....*....|....*....|....*.
gi 1197511360 322 QTQLMPPLIVLSTLSLPLSPTFSILH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-298 2.83e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.19  E-value: 2.83e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   7 ALIMISIfTGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWN 85
Cdd:COG1007   106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  86 IIN-----SHNQLTPLTTTIALTM-------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------- 145
Cdd:COG1007   185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpgl 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 146 -HPWTNlnILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTfcpSLTVLN-------LFIYLALTIVMFS 217
Cdd:COG1007   265 aADWQL--LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLA---AGTPLGvsaalfyLLAYLFMNLGAFA 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 218 ILNL-----NTNTTMLTLSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYF 292
Cdd:COG1007   340 VILLlsrkgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419


                  ....*.
gi 1197511360 293 YMRLIY 298
Cdd:COG1007   420 YLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-297 7.97e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 98.87  E-value: 7.97e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   7 ALIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWN 85
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  86 IINSHNQLTPLTTTI------------ALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------- 145
Cdd:TIGR01770 185 FEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgf 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 146 -HPWTNlnILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVM----FSIL- 219
Cdd:TIGR01770 265 sEAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLs 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 220 -----NLNTNTTMLTLSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYM 294
Cdd:TIGR01770 343 llrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422


                  ...
gi 1197511360 295 RLI 297
Cdd:TIGR01770 423 RVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-281 1.69e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.46  E-value: 1.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  25 HWLLMWIGLEINMLSIIP-ILMKNHKPRSTEAATKYFLVQTMASMLLMF----------TIVFNAMHSGQWNIINSHNQ- 92
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFgislmynytgTLSFDELSKALTGGLNSSGLl 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  93 LTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLL-TWQKLAPISIM-----LQIHPWTNLNILLLIAISSILVGG 166
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 167 WGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFS---------ILNLNTNTTMLTLSNLWNKT 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAglflcagsvIYRRVHTRNIRDYGGLAKTM 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1197511360 238 PTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATI 281
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-347 6.44e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 461.24  E-value: 6.44e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   2 KPTILALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 162 ILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 242 LTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQITK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321

                         330       340
                  ....*....|....*....|....*.
gi 1197511360 322 QTQLMPPLIVLSTLSLPLSPTFSILH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 3-346 1.09e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 338.70  E-value: 1.09e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   3 PTILALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSG 82
Cdd:MTH00135    3 PYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPwTNLNILLLIAISSI 162
Cdd:MTH00135   83 QWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLTST 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTITL 242
Cdd:MTH00135  162 LVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQITKQ 322
Cdd:MTH00135  242 LTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQL 321

                         330       340
                  ....*....|....*....|....
gi 1197511360 323 TQLMPPLIVLSTLSLPLSPTFSIL 346
Cdd:MTH00135  322 TLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 3-342 3.59e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 332.56  E-value: 3.59e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   3 PTILALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSG 82
Cdd:MTH00112    3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSI 162
Cdd:MTH00112   83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTITL 242
Cdd:MTH00112  163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQiTKQ 322
Cdd:MTH00112  243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK-PKK 321

                         330       340
                  ....*....|....*....|
gi 1197511360 323 TQLMPPLIVLSTLSLPLSPT 342
Cdd:MTH00112  322 NTLTATLTTLSTLLLPLSPM 341
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 3-342 2.50e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 327.65  E-value: 2.50e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   3 PTILALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSG 82
Cdd:MTH00070    3 PYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSI 162
Cdd:MTH00070   83 EWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLST 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTITL 242
Cdd:MTH00070  163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTS 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQiTKQ 322
Cdd:MTH00070  243 MMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-NKT 321

                         330       340
                  ....*....|....*....|
gi 1197511360 323 TQLMPPLIVLSTLSLPLSPT 342
Cdd:MTH00070  322 NNLLSLTIILSLMLLPITPT 341
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 3-346 4.05e-80

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 247.96  E-value: 4.05e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   3 PTILALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSG 82
Cdd:MTH00200    3 PLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSI 162
Cdd:MTH00200   83 QWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSV 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTITL 242
Cdd:MTH00200  163 LVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSM 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQITKQ 322
Cdd:MTH00200  243 LLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN 322

                         330       340
                  ....*....|....*....|....
gi 1197511360 323 TqLMPPLIVLSTLSLPLSPTFSIL 346
Cdd:MTH00200  323 L-LVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 4-347 5.50e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 237.52  E-value: 5.50e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   4 TILALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQ 83
Cdd:MTH00041    4 NVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  84 WNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSIL 163
Cdd:MTH00041   84 WSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 164 VGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTITLT 243
Cdd:MTH00041  164 VGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 244 IMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPT--FNNTKMKWQLQITK 321
Cdd:MTH00041  244 FILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQhsISLFSWRNSGNITV 323

                         330       340
                  ....*....|....*....|....*.
gi 1197511360 322 QTQLMPPLIVLSTLSLPLSPTFSILH 347
Cdd:MTH00041  324 YGVILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 8-346 1.61e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 171.16  E-value: 1.61e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   8 LIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWNII 87
Cdd:MTH00160    9 LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFNNI 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  88 NShnqltpLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIhpwTNLNILLLIAISSILVGGW 167
Cdd:MTH00160   89 SS------MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAI 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTITLTIMIA 247
Cdd:MTH00160  160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYStslTLFPTFNNTKMKWQLQITKQTQLMP 327
Cdd:MTH00160  240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1197511360 328 PLIVLSTLSLPLSPTFSIL 346
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-315 5.54e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 166.99  E-value: 5.54e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  13 IFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWNIInshnq 92
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  93 ltpLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNL-NILLLIAISSILVGGWGGLN 171
Cdd:MTH00144   88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 172 QTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLwNKTPTITLTIMIALLSL 251
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSL 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511360 252 GGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKW 315
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-312 6.82e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 159.17  E-value: 6.82e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   6 LALIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWN 85
Cdd:MTH00011    8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  86 IInshnqlTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSILVG 165
Cdd:MTH00011   88 NI------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 166 GWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTITLTIM 245
Cdd:MTH00011  162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1197511360 246 IALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYStSLTLFPTFNNTK 312
Cdd:MTH00011  242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-300 1.15e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.41  E-value: 1.15e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   8 LIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHsgqwnii 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  88 NSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHpwTNLNILLLIAISSILVGGW 167
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS--SSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLTLSNLWNKTPTITLTIMIA 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1197511360 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYST 300
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-298 1.46e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 109.34  E-value: 1.46e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   8 LIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWNI 86
Cdd:MTH00199  102 LILIVAL-GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  87 INSHNQLT----PLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNlnILLLIAISSI 162
Cdd:MTH00199  181 QGINSILTgdvgKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 163 LVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILTFCP-SLTVLNLFIYLALTIVMFSI-LNLN-TNTTMLTLSNLWNK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIiLSLKlTKGLIVEVSGLSRK 338

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511360 237 TPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIY 298
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-297 5.56e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.88  E-value: 5.56e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  16 GTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIV-------------FNAMHS 81
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINLVLN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPwtNLNILLLIAISS 161
Cdd:MTH00196   85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 162 ILVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILTF-CPSLTVLNLFIYLALTIVMFSI-LNLNTNTTMLT-LSNLWN 235
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFSIiLALNVYKNLIIeFSGLSR 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511360 236 KTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLI 297
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-298 2.83e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.19  E-value: 2.83e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   7 ALIMISIfTGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWN 85
Cdd:COG1007   106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  86 IIN-----SHNQLTPLTTTIALTM-------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------- 145
Cdd:COG1007   185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpgl 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 146 -HPWTNlnILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTfcpSLTVLN-------LFIYLALTIVMFS 217
Cdd:COG1007   265 aADWQL--LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLA---AGTPLGvsaalfyLLAYLFMNLGAFA 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 218 ILNL-----NTNTTMLTLSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYF 292
Cdd:COG1007   340 VILLlsrkgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYY 419


                  ....*.
gi 1197511360 293 YMRLIY 298
Cdd:COG1007   420 YLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-297 7.97e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 98.87  E-value: 7.97e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   7 ALIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWN 85
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  86 IINSHNQLTPLTTTI------------ALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------- 145
Cdd:TIGR01770 185 FEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgf 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 146 -HPWTNlnILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVM----FSIL- 219
Cdd:TIGR01770 265 sEAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLs 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 220 -----NLNTNTTMLTLSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYM 294
Cdd:TIGR01770 343 llrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYL 422


                  ...
gi 1197511360 295 RLI 297
Cdd:TIGR01770 423 RVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-281 1.69e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.46  E-value: 1.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  25 HWLLMWIGLEINMLSIIP-ILMKNHKPRSTEAATKYFLVQTMASMLLMF----------TIVFNAMHSGQWNIINSHNQ- 92
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFgislmynytgTLSFDELSKALTGGLNSSGLl 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  93 LTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLL-TWQKLAPISIM-----LQIHPWTNLNILLLIAISSILVGG 166
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 167 WGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFS---------ILNLNTNTTMLTLSNLWNKT 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAglflcagsvIYRRVHTRNIRDYGGLAKTM 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1197511360 238 PTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATI 281
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
7-297 7.56e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 92.96  E-value: 7.56e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   7 ALIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWN 85
Cdd:PRK05777  107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  86 IINSHNQLTPLTTT------------IALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------H 146
Cdd:PRK05777  186 FAGIAKALADGSGNsllllfglvfllVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggL 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 147 PWTNLNILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVM----FSILNL- 221
Cdd:PRK05777  266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMtlgaFGVISLl 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 222 ----NTNTTMLTLSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLI 297
Cdd:PRK05777  346 rrkgGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-301 1.56e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 77.11  E-value: 1.56e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  15 TGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWNIINSHNQLT 94
Cdd:COG0651   118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLA 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  95 PLTTTIALT----------MKLGMTPFHFWVPE-----------VTQGISLMTGM--LLLTWQKLAPISIMLQIHPWtnl 151
Cdd:COG0651   198 ELDPGLLLAafalllvgfgIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGTL--- 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 152 niLLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNL-------NTN 224
Cdd:COG0651   275 --LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLaagaierATG 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511360 225 TTMLT-LSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTS 301
Cdd:COG0651   353 TRDLDkLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 6-267 8.66e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 62.95  E-value: 8.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   6 LALIMIsIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRST---------EAATKYFLVQTMASMLLMF---- 72
Cdd:MTH00198  191 FALVLI-VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFgcal 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  73 ------------TIVFNAMHSGqwNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPIS 140
Cdd:MTH00198  270 yfgftgnegmlgTILSATLETT--NIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYI 347

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 141 IMLQIHPWTNLniLLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLN----LFIYLALTIVMF 216
Cdd:MTH00198  348 LLTSLVITSKL--LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASF 425

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511360 217 SIL---------------------NLNTNTTMLTLSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAII 267
Cdd:MTH00198  426 TVIctleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 9.90e-10

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 53.42  E-value: 9.90e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1197511360 291 YFYMRLIYSTSLTLFPTFNNTKMKWQLQITKQTQLMPPLIVLSTLSLPLSP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 2.66e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.27  E-value: 2.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  33 LEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWNIINSHNQLTPLTTT--------IALTM 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENPTVvtafgfvlLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 105 KLGMTPFHFWVP----EVTQGISLMTGMLLLTWQKLAPISIMLQI------HPWTNLNILLLIAISSILVGGWGGLNQTQ 174
Cdd:PRK08375  215 KAAVFPLHTWLPraypAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 175 LRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIVMFSILNLNTNTTMLT--------LSNLWNKTPTITLTIMI 246
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTygtrrlseLSGLGRRMPLTAAAFAV 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1197511360 247 ALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIY 298
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 28-298 8.66e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.40  E-value: 8.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  28 LMWIGLEINMLSIIPILMKNHKPRsteAATKYFLVQTMASMLL---MFTIVFNAMHSGQWNIINSHNQLTPLTTT----- 99
Cdd:TIGR01972 133 VFWEAMLIPMYLLIGVWGGPNRIY---AAMKFFLYTLAGSLLMllaILGLYFLGGGTFDLLELLNLPLPFGVQTWlflaf 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 100 -IALTMKLGMTPFHFWVPEV-----TQGISLMTGMLLltwqKLAPISIM---LQIHPWTNLN---ILLLIAISSILVGGW 167
Cdd:TIGR01972 210 fIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLrfnLPLFPDASLYfapVLAALGVIAIIYGAL 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 168 GGLNQTQLRKILAYSSIAHMGW-MMAILTFCPS------LTVLNLFIYLALTIVMFSILNLNTNTTMLT-LSNLWNKTPT 239
Cdd:TIGR01972 286 IALAQTDIKRLIAYSSISHMGFvLLGIFSFNELgisgavFQMISHGLITAALFLLVGVLYERAHTRDIAkYGGLANKMPV 365

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511360 240 ITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNniTVATIIAIMALLNLYFYMRLIY 298
Cdd:TIGR01972 366 LAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVN--PVVAFLAALGIVLAAAYMLTLY 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
7-242 9.42e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.52  E-value: 9.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360   7 ALIMISIFTGTMLTMIGSHWLLMWIGLEinMLSIIPILMKNH---KPRSTEAATKYFLVQTMASMLLMFTI-VFNAMHSG 82
Cdd:PRK02504  113 AAILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSsLLYGLSGG 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  83 QWN---IINSHNQLTPLTTTIALTM-------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLA----PISIMLQIHP- 147
Cdd:PRK02504  191 STQlsaIALALITSPSLGLALALVFviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPs 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 148 ----WTNLNILLliAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCP----SLTVLNLFIYLALT------I 213
Cdd:PRK02504  271 fdeqWKLLFTAL--AILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNlgafacV 348

                         250       260       270
                  ....*....|....*....|....*....|
gi 1197511360 214 VMFSilnLNTNTTMLT-LSNLWNKTPTITL 242
Cdd:PRK02504  349 ILFS---LRTGTDQISdYAGLYQKDPLLTL 375
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-299 1.04e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.18  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  33 LEINML-SIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIvfnAMHSGQWNIIN-----SHNQLTPLTTTI------ 100
Cdd:PRK08376  150 LEIMSIaSYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNmaylaVKMSENPTVVAKialalf 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 101 --ALTMKLGMTPFHFWVPEV-TQGISLMTGMLLLTWQ----KLAPISIML---QIHPWTNLNILLLIAISSILVGGWGGL 170
Cdd:PRK08376  227 iaGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSIygpAINLATVGWVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 171 NQTQLRKILAYSSIAHMGWMMaiLTFCPSLTVL---------------------NLFIYLALTIVMFSILNLNTNTTMLT 229
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYML--LGLGVGLAALgdpamasygeialaggiyhivNHALYKALLFLTAGAVIYETGTRNLN 384

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1197511360 230 -LSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWaIIQELSKNNNITVATIIAIMALLNLYFYMRLIYS 299
Cdd:PRK08376  385 eLGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKW-LIYESSALFNPILGVIAMIGSVLTLASFVKVFHT 454
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 11-194 1.46e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 52.85  E-value: 1.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  11 ISIFTGTMLTM-IGSHWLLMWIGLEI-NMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWNI-- 86
Cdd:COG1009   117 LLLFMAAMLGLvLSDNLLLLFVFWELvGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFse 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  87 --INSHNQLTPLTTTIALTM-------KLGMTPFHFWVPE-----------------VTQGISLMTgmllltwqKLAPIs 140
Cdd:COG1009   197 llAAAPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RLSPL- 267

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1197511360 141 imLQIHPWTnLNILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAIL 194
Cdd:COG1009   268 --FALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-192 3.38e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 51.62  E-value: 3.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  55 AATKYFLVQTMASMLLMFTIVFNAMHSGQW--NIINSHNQLTPLTTT--------IALTMKLGMTPFHFWVPEV-----T 119
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQlllflaffIAFAVKVPMFPFHTWLPDAhveapT 241

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511360 120 QGISLMTGMLLltwqKLAP---ISIMLQIHP---WTNLNILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMA 192
Cdd:COG1008   242 AGSVLLAGVLL----KMGGyglLRFALPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-191 1.70e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.56  E-value: 1.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  55 AATKYFLVQTMASMLLMFTIVFNAMHSGQ--WNIINSHNQLTPLTTT--------IALTMKLGMTPFHFWVP----EVTQ 120
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPdahgEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511360 121 GISLMTGMLLLTWQKLAPISIMLQIHPWTNLN---ILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK12561  218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-299 2.50e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 45.73  E-value: 2.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  48 HKPRSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQWNIIN----SHNQLTPLTT-----------------TIALTMKL 106
Cdd:PRK12667  158 DRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADlsakIRGLSFPLTGglagnpplalgvalalaLWAFTIKA 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 107 GMTPFHFWVPEV----TQGISLMTGMLLLTWQKLAPISIMLQIHPWTN---------LNILLLIAISSILVGGWGGLNQT 173
Cdd:PRK12667  238 AIFPNHFWLPDAhpaaPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPslidfraalSPILIILGAVSAIIGALMMVVQK 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 174 QLRKILAYSSIAHMGW-MMAIltfcpsltvlNLFIYLALTIVMFSILNLNTNTTMLTLSN-----------------LWN 235
Cdd:PRK12667  318 DVKRLLAYSTISHMGYiFMGI----------GIGTQLGLAAALFHIINHAIAKSLLFLASgvfihaagtrdidelagLGR 387

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511360 236 KTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYS 299
Cdd:PRK12667  388 KMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 55-191 6.87e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.42  E-value: 6.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  55 AATKYFL------VQTMASMLLMFTIVFNAMHSGQWNIINSHNqLTPLTTT-------IALTMKLGMTPFHFWVPEV--- 118
Cdd:PRK05846  162 AATKFFLytllgsLLMLVAIIYLVVVYYNATGTFDIADLLNLP-LPPGVQYwlflaffIAFAVKMPMFPLHTWLPDAhvq 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 119 --TQGISLMTGMLLltwqKLAP---ISIMLQIHPWTNLN---ILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK05846  241 apTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEfapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFV 316


                  .
gi 1197511360 191 M 191
Cdd:PRK05846  317 T 317
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-299 9.44e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 44.04  E-value: 9.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  17 TMLTMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMF---TIVFNAMHSGQW---NIINSH 90
Cdd:PRK06589  129 GVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpavILIYTKTGNLDFvsgGLFSKN 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  91 NQLTPLTTTIALTMKLGMTPFHFWVPEV----TQGISLMTGMLLLTWQKLAPISIMLQIHPWTNL-------NILLLIAI 159
Cdd:PRK06589  209 QSIILLLMFIYGIAKTAIFPVHSWLPAAmvahYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLqrifaefNWLIFIPI 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 160 SSILVGGWGGLNQTQLRKILAYSSIAHMGWMM--AILTFCPSLTVLNL------FIYLALTIVMFSILNLNTNTTMLTLS 231
Cdd:PRK06589  289 VSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILhlvshsFAKICLFYSMGSIYSLKKEDQVDKLH 368

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511360 232 NLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAIM----ALLNLYFYMRLIYS 299
Cdd:PRK06589  369 GTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSALYLLKILSS 440
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-300 2.96e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 42.44  E-value: 2.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  82 GQWNIIN----SHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTN-----LN 152
Cdd:MTH00207  165 GHWSITNmwqtDMNNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSstywfNP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 153 ILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTF-CPSLTVLNLFIYLALTIVMF----SILNLNTNTTM 227
Cdd:MTH00207  245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLgMPKLALFHLITHALFKALLFvcagSLIHSHHHSQD 324

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511360 228 L-TLSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQ-ELSKNNNITVATIIAIMALLNLYFYMRLIYST 300
Cdd:MTH00207  325 LrTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILEsSLFYPHNSLMILMIFLATALTAAYSTRFTLAV 399
PRK12650 PRK12650
DUF4040 family protein;
94-192 2.02e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.03  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  94 TPLTTTIALTM------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHP-------WtnlNILLLIA-I 159
Cdd:PRK12650  204 PGLTTVVAVLIavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPvfhdvavW---NWLLIIVgM 280

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1197511360 160 SSILVGGWGGLNQTQLRKILAYSSIAHMGWMMA 192
Cdd:PRK12650  281 ITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVA 313
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 14-284 2.15e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 39.98  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  14 FTGTMLTMIGSHWLLMWIGLEINML-SIIPILMKNHKPRstEAATKYFLVQTMASMLLMFTIVFNAMHSGQWNIINSHNQ 92
Cdd:PRK08668  108 LAGVLGVFLANDLLTLYIFWEIMTFsSFMMVPMGKKESR--KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQG 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  93 LTPLTTT-----------IALTMKLGMTPFHFWVPEV--------------------TQGISLMTGMLLLTwqKLAPISI 141
Cdd:PRK08668  186 LINDTSTgfalivflfllAFGVAKAGIFPLHVWAPDAyseapqsfsavlsgqlsklgAYGFLLVLYVLPGT--KLFSEFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 142 MLQIHPWTNLNILLLIAISsILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLT-------VLNLFIYLALTIV 214
Cdd:PRK08668  264 TYRGVPLFNYILAWLGNIS-IIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfagglfhVFNHALFKGLFFL 342

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1197511360 215 MFSILNLNTNTT-MLTLSNLWNKTPTITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIAI 284
Cdd:PRK08668  343 IFAAVIYRTGTTkISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFF 413
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
50-191 2.84e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 39.30  E-value: 2.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  50 PRSTEAATKYFLVQTMASMLLMFTIVFNAMHSG----QWNIINSHNqlTPLTTT--------IALTMKLGMTPFHFWVP- 116
Cdd:PRK06473  153 QRRGYAATKFLLYTAISGILILVSFLGLVWLSGassfDYEPLRSHT--LPLSTQllllapilVGFGIKIPLVPFHTWLPd 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 117 ---EVTQGIS-LMTGMLL-LTWQKLAPISIMLQIHPWTNLN-ILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK06473  231 ahvEASTPVSvLLAGVLLkLGTYGLLRFGVGLFPEAWVYLApWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310


                  .
gi 1197511360 191 M 191
Cdd:PRK06473  311 L 311
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-297 3.53e-03

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 39.22  E-value: 3.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  51 RSTEAATKYFLVQTMASMLLMFTIVFNAMHSGQ----WNIIN---SHNQLTPLTTTIALT-------MKLGMTPFHFWVP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFSWLYGLSGGeielQEIVNgliNTQMYNSPGISIALIfitvgigFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 117 EVTQG-----------ISLMTGMLLLTwqKLAPISIMLQIHPWTNLniLLLIAISSILVGGWGGLNQTQLRKILAYSSIA 185
Cdd:CHL00049  239 DVYEGsptpvvaflsvTSKVAASALAT--RIFDIPFYFSSNEWHLL--LEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 186 HMGWMM-AILTFCPSLTVLNLFIYLALTIVM----FS---ILNLNTNTTMLT-LSNLWNKTPTITLTIMIALLSLGGLPP 256
Cdd:CHL00049  315 QIGYVIiGIIVGDSNDGYASMITYMLFYIFMnlgtFAcivLFGLRTGTDNIRdYAGLYTKDPFLALSLALCLLSLGGIPP 394

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1197511360 257 LTGFLPKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLI 297
Cdd:CHL00049  395 LAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKII 435
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 10-190 5.04e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.76  E-value: 5.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  10 MISIFTGTML-TMIGSHWLLMWIGLEINMLSIIPILMKNHKPRSTEAATKYFLVQTMASMLLMFTIVF------NAMHSG 82
Cdd:PRK06458  113 MYQLFLFTMLlALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILvyanaaTVMGDG 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  83 Q----WNIINSHN-QLTPLTTTIALTM-------KLGMTPFHFWVP----EVTQGISLMTGMLLLTWQKLAPIS--IMLQ 144
Cdd:PRK06458  193 EmailWTELLKHAsLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRyyILID 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1197511360 145 IHPWTNL--NILLLIAISSILVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK06458  273 AAIGSDFpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 102-315 6.95e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 37.54  E-value: 6.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 102 LTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLiaisSILVGGWGGLNQTQLRKILAY 181
Cdd:MTH00091   67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLF----GLLICFFQMFLLKSYKNLLIL 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360 182 SSIAHMGWMMAILTFCpSLTVLNLFIYLaltivmfsilnlntNTTMLTLSNLWNKTPTITLTIMIALLSLGGLPPLTGFL 261
Cdd:MTH00091  143 SSTESFNWLILSFFFS-FFNVFFLFFYY--------------FLLMLFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFF 207

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1197511360 262 PKWAIIQELSKNNNITVATIIAIMALLNLYFYMRLIYSTSLTLFPTFNNTKMKW 315
Cdd:MTH00091  208 VKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFF 261
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 28-191 9.48e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 37.81  E-value: 9.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  28 LMWIGLEIN-MLSIIPILMKNHKpRSTEAATKYFLVQTMA------SMLLMFTIVFNAMHSG--QWNIINSH-NQLTPLT 97
Cdd:PRK08676  126 LFWIFAELTtVFSAMLIAILSAR-ENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTELAAHaSLLSPSV 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511360  98 TTIALTM-------KLGMTPFHFWVPEV-TQGISLMTGMLLLTWQKLAPISIM--------LQIHPwTNLNILLLIAISS 161
Cdd:PRK08676  205 LGASFLFifigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlsallrqSGAAE-QFSNVLIGLGIFS 283

                         170       180       190
                  ....*....|....*....|....*....|
gi 1197511360 162 ILVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08676  284 IAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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