|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.40e-148 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 422.33 E-value: 1.40e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMH 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 SGQWNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 161 SILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYSTSLTLFPTFNNTKMKWQLQIT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 1197511556 321 NQTQLMPPLIILSTLSLPLAPTFSILH 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
2.04e-16 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 78.51 E-value: 2.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 23 SSHWLLMWAGLEINMLAVIP-ILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQWNITNTHSQLTP------ 95
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 96 -----LTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLL-TWQKLAPISIM-----LQIHPWTNLNILLLIALLSILV 164
Cdd:pfam00361 81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 165 GGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYL-------ALTIVMFTILNLNMNTTT--LTLSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLlthglfsAGLFLCAGSVIYRRVHTRniRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 1197511556 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
18-298 |
1.20e-12 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 68.60 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 18 MLAMISS-HWLLMWAGLEINMLAV-IPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQWNITN-----TH 90
Cdd:COG1007 115 MMLMASAnDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGiaaalAA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 91 SQLTPLTITIALTM-------KLGMTPFHFWVPEVTQG-----------ISLMAGMLLLTwqKLAPISIMLQIHPWTnlN 152
Cdd:COG1007 195 GGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGaptpvtaflatAPKIAAFAALL--RLLVEAFPGLAADWQ--L 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 153 ILLLIALLSILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPL----TVLNLTIYLALTIVMFTILNL----NMN 224
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLlsrkGGE 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511556 225 TTTLT-LSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIY 298
Cdd:COG1007 351 AEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-297 |
1.20e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 68.44 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 8 LIMITIFTGTMLAMISSHWLLMWAGLEINMLAV-IPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQWNI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 87 TNTHSQLTPLTITI------------ALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQI--------- 145
Cdd:TIGR01770 186 EDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 146 HPWTNLNILLLIALLSilVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVM----FTIL-- 219
Cdd:TIGR01770 266 EAWQIFLAIIAFLSML--IGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsl 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 220 ----NLNMNTTTLTLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMR 295
Cdd:TIGR01770 344 lrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
..
gi 1197511556 296 LI 297
Cdd:TIGR01770 424 VV 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.40e-148 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 422.33 E-value: 1.40e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMH 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 SGQWNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 161 SILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYSTSLTLFPTFNNTKMKWQLQIT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 1197511556 321 NQTQLMPPLIILSTLSLPLAPTFSILH 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.01e-103 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 307.12 E-value: 3.01e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMH 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 SGQWNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPwTNLNILLLIALL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 161 SILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYSTSLTLFPTFNNTKMKWQLQIT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*.
gi 1197511556 321 NQTQLMPPLIILSTLSLPLAPTFSIL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-342 |
2.71e-100 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 299.43 E-value: 2.71e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMH 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 SGQWNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 161 SILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYSTSLTLFPTFNNTKMKWQLQiT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK-P 319
|
330 340
....*....|....*....|..
gi 1197511556 321 NQTQLMPPLIILSTLSLPLAPT 342
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPM 341
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-342 |
1.63e-99 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 297.60 E-value: 1.63e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMH 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 SGQWNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 161 SILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYSTSLTLFPTFNNTKMKWQLQiT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-N 319
|
330 340
....*....|....*....|..
gi 1197511556 321 NQTQLMPPLIILSTLSLPLAPT 342
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPT 341
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
7.19e-73 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 229.47 E-value: 7.19e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMH 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 SGQWNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 161 SILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYSTSLTLFPTFNNTKMKWQLQiT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTK-S 319
|
330 340
....*....|....*....|....*.
gi 1197511556 321 NQTQLMPPLIILSTLSLPLAPTFSIL 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-347 |
3.09e-71 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 225.19 E-value: 3.09e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMH 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 SGQWNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 161 SILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYSTSLTLFPT--FNNTKMKWQLQ 318
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQhsISLFSWRNSGN 320
|
330 340
....*....|....*....|....*....
gi 1197511556 319 ITNQTQLMPPLIILSTLSLPLAPTFSILH 347
Cdd:MTH00041 321 ITVYGVILSILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-315 |
1.95e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 160.44 E-value: 1.95e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMItIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMH 80
Cdd:MTH00144 2 SSPSNLLFLFL-MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 SGQWNITnthsqltpLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIA-L 159
Cdd:MTH00144 81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 160 LSILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLwNKTPM 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYK 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197511556 240 ITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYSTSLTLFPTFNNTKMKW 315
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.32e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 155.75 E-value: 1.32e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 1 MNPITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMh 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 81 sgqwnITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIhpwTNLNILLLIALL 160
Cdd:MTH00160 81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 161 SILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 241 TLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYStslTLFPTFNNTKMKWQLQIT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKN 309
|
330 340
....*....|....*....|....*.
gi 1197511556 321 NQTQLMPPLIILSTLSLPLAPTFSIL 346
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
5-312 |
1.44e-42 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 150.32 E-value: 1.44e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 5 TLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQW 84
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 85 NITnthsqlTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALLSILV 164
Cdd:MTH00011 87 KNI------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 165 GGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMITLTT 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511556 245 MIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYStSLTLFPTFNNTK 312
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-300 |
1.29e-33 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 126.33 E-value: 1.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 8 LIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHsgqwnit 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 88 NTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHpwTNLNILLLIALLSILVGGW 167
Cdd:MTH00197 75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS--SSFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 168 GGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTILNLNMNTTTLTLSNLWNKTPMITLTTMIA 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1197511556 248 LLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIYST 300
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
7-267 |
4.52e-23 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 99.32 E-value: 4.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 7 LLIMITIFtGTMLAMISSHWLLMWAGLEINMLAV-IPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQWN 85
Cdd:MTH00199 101 ILILIVAL-GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 86 ITNTHSQLT----PLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALLS 161
Cdd:MTH00199 180 IQGINSILTgdvgKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSII 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 162 ilVGGWGGLNQTQLRKILAHSSIAHMG---WMVAILTFCP-PLTVLNLTIYLALTIVMFTILnLNMNTTT---LTLSNLW 234
Cdd:MTH00199 260 --YGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSII-LSLKLTKgliVEVSGLS 336
|
250 260 270
....*....|....*....|....*....|...
gi 1197511556 235 NKTPMITLTTMIALLSLGGLPPLTGFLPKWMII 267
Cdd:MTH00199 337 RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-267 |
3.62e-17 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 81.62 E-value: 3.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 16 GTMLAMISSHWLLMWAGLEINMLAV-IPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQWNITNTHSQLT 94
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 95 P-------------LTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQIHPwtNLNILLLIALLS 161
Cdd:MTH00196 85 SgqsfssvsvpigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 162 ILVGGWGGLNQTQLRKILAHSSIAHMG---WMVAILTFCPPLTVL-NLTIYLALTIVMFTI-LNLNMNTTTLT-LSNLWN 235
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFESIQASLvYLFIYIIMSICVFSIiLALNVYKNLIIeFSGLSR 242
|
250 260 270
....*....|....*....|....*....|..
gi 1197511556 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMII 267
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
2.04e-16 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 78.51 E-value: 2.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 23 SSHWLLMWAGLEINMLAVIP-ILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQWNITNTHSQLTP------ 95
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 96 -----LTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLL-TWQKLAPISIM-----LQIHPWTNLNILLLIALLSILV 164
Cdd:pfam00361 81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 165 GGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYL-------ALTIVMFTILNLNMNTTT--LTLSNLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLlthglfsAGLFLCAGSVIYRRVHTRniRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 1197511556 236 KTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
18-298 |
1.20e-12 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 68.60 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 18 MLAMISS-HWLLMWAGLEINMLAV-IPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQWNITN-----TH 90
Cdd:COG1007 115 MMLMASAnDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGiaaalAA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 91 SQLTPLTITIALTM-------KLGMTPFHFWVPEVTQG-----------ISLMAGMLLLTwqKLAPISIMLQIHPWTnlN 152
Cdd:COG1007 195 GGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGaptpvtaflatAPKIAAFAALL--RLLVEAFPGLAADWQ--L 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 153 ILLLIALLSILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPL----TVLNLTIYLALTIVMFTILNL----NMN 224
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLlsrkGGE 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511556 225 TTTLT-LSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMRLIY 298
Cdd:COG1007 351 AEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-297 |
1.20e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 68.44 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 8 LIMITIFTGTMLAMISSHWLLMWAGLEINMLAV-IPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQWNI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 87 TNTHSQLTPLTITI------------ALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLAPISIMLQI--------- 145
Cdd:TIGR01770 186 EDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 146 HPWTNLNILLLIALLSilVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVM----FTIL-- 219
Cdd:TIGR01770 266 EAWQIFLAIIAFLSML--IGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsl 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 220 ----NLNMNTTTLTLSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFYMR 295
Cdd:TIGR01770 344 lrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
..
gi 1197511556 296 LI 297
Cdd:TIGR01770 424 VV 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
5-221 |
3.28e-11 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 64.07 E-value: 3.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 5 TLLLIMitifTGTMLAMISS-HWLLMWAGLEINMLAV-IPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSG 82
Cdd:PRK05777 107 LLVLFA----LLGMMVMVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATG 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 83 QWNITNTHSQLTPLT------------ITIALTMKLGMTPFHFWVPEVTQG-----ISLMAgmlllTWQKLAPISIMLQI 145
Cdd:PRK05777 183 SLSFAGIAKALADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGaptpvTAFLA-----TAPKIAAFAVLLRL 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 146 -------HPWTNLNILLLIALLSILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTV----LNLTIYLALTIV 214
Cdd:PRK05777 258 lvvafggLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsavlFYLLAYLFMTLG 337
|
....*..
gi 1197511556 215 MFTILNL 221
Cdd:PRK05777 338 AFGVISL 344
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
5-301 |
8.24e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 56.69 E-value: 8.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 5 TLLLIMITiftGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQW 84
Cdd:COG0651 111 PLFLLLLA---GMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 85 NITNTHSQLTPLT----------ITIALTMKLGMTPFHFWVPE-----------VTQGISLMAGM--LLLTWQKLAPISI 141
Cdd:COG0651 188 NMADLAARLAELDpglllaafalLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADP 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 142 MLQIHPWtnlniLLLIALLSILVGGWGGLNQTQLRKILAHSSIAHMGWMVAILTFCPPLTVLNLTIYLALTIVMFTIL-- 219
Cdd:COG0651 268 ALFLGTL-----LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLfl 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 220 ---NLNMNTTTLTLSN---LWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQELSKNNNIIMAMIMAIMALLSLYFY 293
Cdd:COG0651 343 aagAIERATGTRDLDKlggLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYF 422
|
....*...
gi 1197511556 294 MRLIYSTS 301
Cdd:COG0651 423 VRIFGRAQ 430
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
9.12e-09 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 50.72 E-value: 9.12e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1197511556 291 YFYMRLIYSTSLTLFPTFNNTKMKWQLQITNQTQLMPPLIILSTLSLPLAP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
3-191 |
1.22e-07 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 53.32 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 3 PITLLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKNYKPRST---------EAATKYFLIQATASMLL--- 70
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYlfg 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 71 ------------MLTIVLNAMHSGQwNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLap 138
Cdd:MTH00198 267 calyfgftgnegMLGTILSATLETT-NIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF-- 343
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1197511556 139 ISIMLQIHPWTNLNILLLIALLSILVGGWGGLNQTQLRKILAHSSIAHMGWMV 191
Cdd:MTH00198 344 TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
5-266 |
3.96e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 45.09 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 5 TLLLIMitifTGTMLAMISSHWLL-MWAGLEINMLAVIPIL-MKNYKPRSTEAATKYFLIQATASMLLMLTIvlnAMHSG 82
Cdd:PRK08376 125 TLILLL----ELGMLGMAITGDLFnFFVFLEIMSIASYALVaFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYG 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 83 QWNITN-----THSQLTPLTITI--------ALTMKLGMTPFHFWVPEV-TQGISLMAGMLLLTWQ----KLAPISIML- 143
Cdd:PRK08376 198 QYGTLNmaylaVKMSENPTVVAKialalfiaGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSIy 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 144 --QIHPWTNLNILLLIALLSILVGGWGGLNQTQLRKILAHSSIAHMGWM-----VAILTFCPPLT--------------V 202
Cdd:PRK08376 278 gpAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglgVGLAALGDPAMasygeialaggiyhI 357
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511556 203 LNLTIYLALTIVMFTILNLNMNTTTLT-LSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMI 266
Cdd:PRK08376 358 VNHALYKALLFLTAGAVIYETGTRNLNeLGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
6-268 |
8.70e-05 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 44.16 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 6 LLLIMITIFTGTMLAMISSHWLLMWAGLEINMLAVIPILMKnykPRSTEAATKYFLIQATASMLLMLTIVLNAMHSG--- 82
Cdd:TIGR01972 111 LLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG---PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtf 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 83 ------QWNITNTHSQLTPLTITIALTMKLGMTPFHFWVPEV-----TQGISLMAGMLLltwqKLAPISIM---LQIHPW 148
Cdd:TIGR01972 188 dllellNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLrfnLPLFPD 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 149 TNLNILLLIALL---SILVGGWGGLNQTQLRKILAHSSIAHMGW-MVAILTFCPP------LTVLNLTIYLALTIVMFTI 218
Cdd:TIGR01972 264 ASLYFAPVLAALgviAIIYGALIALAQTDIKRLIAYSSISHMGFvLLGIFSFNELgisgavFQMISHGLITAALFLLVGV 343
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1197511556 219 LNLNMNTTTLT-LSNLWNKTPMITLTTMIALLSLGGLPPLTGFLPKWMIIQ 268
Cdd:TIGR01972 344 LYERAHTRDIAkYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-188 |
4.59e-04 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 41.94 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 55 AATKYFLIQATASMLLMLTIVLNAMHSGQ--WNITNTHSQLTPLTIT--------IALTMKLGMTPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1197511556 121 GISLMAGMLLLTWQKLAPISIMLQIHPWTNLNILLLIALLSILVGGWGGLN---QTQLRKILAHSSIAHMG 188
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMG 288
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-242 |
4.73e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 41.96 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 9 IMITIFTGTMLAMISSHWLLMWAGLEinMLAVIPILMKNY---KPRSTEAATKYFLIQATAS-MLLMLTIVLNAMHSGQW 84
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSaIFLYGSSLLYGLSGGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 85 NITNTHSQLT---PLTITIALTM-------KLGMTPFHFWVPEVTQGISLMAGMLLLTWQKLA----PISIMLQIHP--- 147
Cdd:PRK02504 193 QLSAIALALItspSLGLALALVFviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPsfd 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 148 --WtnLNILLLIALLSILVGGWGGLNQTQLRKILAHSSIAHMGWmVAILTFCP-----PLTVLNLTIYLALTIVMFT-IL 219
Cdd:PRK02504 273 eqW--KLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGF-VMIGLVAGteagyASMVFYLLAYLFMNLGAFAcVI 349
|
250 260
....*....|....*....|....*.
gi 1197511556 220 NLNMNTTTLTLSN---LWNKTPMITL 242
Cdd:PRK02504 350 LFSLRTGTDQISDyagLYQKDPLLTL 375
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-192 |
1.69e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 40.06 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 55 AATKYFLIQATASMLLMLTIVLNAMHSGQW--NITNTHSQLTPLT--------ITIALTMKLGMTPFHFWVPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTaqlllflaFFIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 120 QGISLMAGMLL----------------LTWQKLAPISIMLQIhpwtnlnilllialLSILVGGWGGLNQTQLRKILAHSS 183
Cdd:COG1008 242 AGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGV--------------IGIIYGALVALAQTDLKRLIAYSS 307
|
....*....
gi 1197511556 184 IAHMGWMVA 192
Cdd:COG1008 308 VSHMGFVLL 316
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
11-194 |
2.73e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 39.37 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 11 ITIFTGTMLAM-ISSHWLLMWAGLEIN-----MLavipILMKNYKPRSTEAATKYFLIQATASMLLMLTIVLNAMHSGQW 84
Cdd:COG1009 117 LLLFMAAMLGLvLSDNLLLLFVFWELVglcsyLL----IGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511556 85 NIT----NTHSQLTPLTITIALTM-------KLGMTPFHFWVPE-----------------VTQGISLMAgmllltwqKL 136
Cdd:COG1009 193 NFSellaAAPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RL 264
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511556 137 APIsimLQIHPWTnLNILLLIALLSILVGGWGGLNQTQLRKILAHSSIAHMGWMVAIL 194
Cdd:COG1009 265 SPL---FALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
|
|
| |
