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Conserved domains on  [gi|1236517319|ref|YP_009412777|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Microcebus ravelobensis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 570.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   1 MFMVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALS 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  81 IALIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 161 TLSNLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236517319 241 IFLGTLYNPHMPEMYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 570.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   1 MFMVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALS 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  81 IALIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 161 TLSNLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236517319 241 IFLGTLYNPHMPEMYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
16-305 5.08e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 331.74  E-value: 5.08e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPF--PL 93
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFgpGL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  94 PLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLW 173
Cdd:pfam00146  92 VLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMPE 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLGPFPLP 251
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236517319 254 mYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYI 305
Cdd:pfam00146 252 -GLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
16-298 4.32e-104

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 307.44  E-value: 4.32e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPF--PL 93
Cdd:COG1005    25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  94 PLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQE-YL 172
Cdd:COG1005   105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgGL 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMP 252
Cdd:COG1005   185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFPI 264
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236517319 253 EMYTT-----NFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:COG1005   265 LPLGGlpgilWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 570.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   1 MFMVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALS 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  81 IALIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 161 TLSNLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236517319 241 IFLGTLYNPHMPEMYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
16-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 512.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPFPLPL 95
Cdd:MTH00111   21 AVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFPL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  96 INMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLWLI 175
Cdd:MTH00111  101 ADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEPLWLI 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMPEMY 255
Cdd:MTH00111  181 FSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLPPELF 260
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236517319 256 TTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPPQM 318
Cdd:MTH00111  261 TINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
1-317 7.56e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 496.84  E-value: 7.56e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   1 MFMVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALS 80
Cdd:MTH00071    6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  81 IALIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSF 160
Cdd:MTH00071   86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 161 TLSNLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00071  166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236517319 241 IFLGTLYNPHMPEMYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPPQ 317
Cdd:MTH00071  246 LFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
16-318 6.34e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 489.50  E-value: 6.34e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPFPLPL 95
Cdd:MTH00134   22 AVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPV 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  96 INMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLWLI 175
Cdd:MTH00134  102 TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQESIWLL 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMPEMY 255
Cdd:MTH00134  182 LPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIPTLPELT 261
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236517319 256 TTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPPQM 318
Cdd:MTH00134  262 TINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
3-316 7.07e-142

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 402.75  E-value: 7.07e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   3 MVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIA 82
Cdd:MTH00218    5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  83 LIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTL 162
Cdd:MTH00218   85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 163 SNLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIF 242
Cdd:MTH00218  165 EGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1236517319 243 LGTLYNphmpemyTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPP 316
Cdd:MTH00218  245 LGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
1-316 1.00e-137

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 392.80  E-value: 1.00e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   1 MFMVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALS 80
Cdd:MTH00040    5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  81 IALIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSF 160
Cdd:MTH00040   85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 161 TLSNLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00040  165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236517319 241 IFLG-TLYNPHMPEMYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPP 316
Cdd:MTH00040  245 LFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
16-313 2.95e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 342.88  E-value: 2.95e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPFPLPL 95
Cdd:MTH00195   18 AVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGF 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  96 INMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLWLI 175
Cdd:MTH00195   98 SSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWVI 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTlynphmpeMY 255
Cdd:MTH00195  178 LLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGG--------GG 249
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1236517319 256 TTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSS 313
Cdd:MTH00195  250 TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
16-305 5.08e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 331.74  E-value: 5.08e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPF--PL 93
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFgpGL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  94 PLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLW 173
Cdd:pfam00146  92 VLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMPE 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLGPFPLP 251
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236517319 254 mYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYI 305
Cdd:pfam00146 252 -GLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
16-302 5.78e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 329.14  E-value: 5.78e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPFPLPL 95
Cdd:MTH00143   17 AVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSS 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  96 INMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLWLI 175
Cdd:MTH00143   97 SYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLG 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMpeMY 255
Cdd:MTH00143  177 FLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLFL--LG 254
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1236517319 256 TTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCM 302
Cdd:MTH00143  255 GVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
1-309 7.70e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 329.04  E-value: 7.70e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   1 MFMVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALS 80
Cdd:MTH00193    3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  81 IALIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSF 160
Cdd:MTH00193   83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 161 TLSNLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00193  163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236517319 241 IFLGTLYNPHMpemyttnFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPI 309
Cdd:MTH00193  243 MFLGGDLLSLL-------FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
1-307 1.83e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 312.74  E-value: 1.83e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   1 MFMVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALS 80
Cdd:MTH00225    2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  81 IALIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSF 160
Cdd:MTH00225   82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 161 TLSNLITTQEYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00225  162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236517319 241 IFLGTLYNphmpeMYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISL 307
Cdd:MTH00225  242 LFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
16-316 4.18e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 310.12  E-value: 4.18e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMW--IPMPFPL 93
Cdd:MTH00054   18 SIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWgvIPYGEGV 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  94 PLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLW 173
Cdd:MTH00054   98 VLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNIW 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMPE 253
Cdd:MTH00054  178 FIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGPT 257
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236517319 254 MYTTN---FATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPP 316
Cdd:MTH00054  258 SYFSNfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
16-298 4.32e-104

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 307.44  E-value: 4.32e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPF--PL 93
Cdd:COG1005    25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  94 PLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQE-YL 172
Cdd:COG1005   105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgGL 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMP 252
Cdd:COG1005   185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFPI 264
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236517319 253 EMYTT-----NFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:COG1005   265 LPLGGlpgilWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
16-316 1.64e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 305.89  E-value: 1.64e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPFP--L 93
Cdd:MTH00216   22 AVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYErgV 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  94 PLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQ-EYL 172
Cdd:MTH00216  102 LISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQnNGI 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPhMP 252
Cdd:MTH00216  182 WFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGGWLSP-IK 260
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236517319 253 EMYTTN--FATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPP 316
Cdd:MTH00216  261 YFKGGAgwFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
18-298 3.98e-98

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 292.10  E-value: 3.98e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  18 AFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPF--PLPL 95
Cdd:PRK06076   28 AFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFgpELVI 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  96 INMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLWLI 175
Cdd:PRK06076  108 ADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLSWNI 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYNPHMPEMY 255
Cdd:PRK06076  188 IPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGGWLPPFPLGGG 267
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1236517319 256 TTN---FATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:PRK06076  268 IPGaiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
2-307 2.23e-92

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 277.05  E-value: 2.23e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319   2 FMVNLLLLIIPVILAMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSI 81
Cdd:MTH00010    5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  82 ALIMWIPMPFPLPLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFT 161
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 162 LSNLITTQeYLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTII 241
Cdd:MTH00010  165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236517319 242 FLGTLYNPHMPEMYttnFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISL 307
Cdd:MTH00010  244 FTSFIPSIFISDLM---LILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPI 306
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
16-316 4.76e-86

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 262.26  E-value: 4.76e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMW--IPMPFPL 93
Cdd:MTH00029   23 SVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWaiVTMDQGV 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  94 PLINMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLW 173
Cdd:MTH00029  103 FLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSVW 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLG--------- 244
Cdd:MTH00029  183 LIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGgwlspldgi 262
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236517319 245 -------TLYNPHMPEMYTTNFATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISLPISTSSIPP 316
Cdd:MTH00029  263 ptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
16-307 8.02e-59

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 190.11  E-value: 8.02e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  16 AMAFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPFPLPL 95
Cdd:MTH00090   12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDF 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  96 INMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNlittQEYLWLI 175
Cdd:MTH00090   92 LSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS----SFSLSLF 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 176 IpswpLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGTLYnphmpemy 255
Cdd:MTH00090  168 V----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSF-------- 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236517319 256 ttnfaTKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYISL 307
Cdd:MTH00090  236 -----LMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVL 282
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
18-298 9.65e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 164.71  E-value: 9.65e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  18 AFFTLIERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPFPLPLIN 97
Cdd:MTH00058   19 AFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSY 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  98 MNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQEYLWLIIP 177
Cdd:MTH00058   99 SSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLFP 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 178 swPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGtlynphmpemytt 257
Cdd:MTH00058  179 --LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFG------------- 243
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1236517319 258 NFATKTLLLA--MLFLWVRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00058  244 GGFVSIMLLFhlLFFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
23-298 1.16e-46

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 161.27  E-value: 1.16e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  23 IERKILGYMQLRKGPNIVGPHGLLQPFADAVKLFIKEPLRPLASSMSLYTIAPTLALSIALIMWIPMPFP--LPLINMNM 100
Cdd:CHL00032   50 LEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGyhLVLADLSI 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 101 GLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQ-EYLWLiipSW 179
Cdd:CHL00032  130 GVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQsKYGFW---GW 206
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 180 PL------TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLG--TLYNPHM 251
Cdd:CHL00032  207 NLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGgwNLSIPYI 286
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236517319 252 --PEMYTTNFATK----------TLLLAMLFLWV----RASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:CHL00032  287 fiPELFEINKTGGvfgttigifiTLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
19-305 1.84e-28

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 111.43  E-value: 1.84e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  19 FFTLIERKILGYMQLRKGPnivgphGLLQPFADAVKLFIKEPLRPLASSMsLYTIAPTLALSIALI--MWIPMPFPLPLI 96
Cdd:COG0650    20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVALAAMLLaaLLVPVLTTGPPL 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319  97 NMNMGLLFMLATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILMSGSFTLSNLITTQE---YLW 173
Cdd:COG0650    93 SFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAahgPLL 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236517319 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIIFLGtlynPHMPE 253
Cdd:COG0650   173 LSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLP----WGIAL 248
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1236517319 254 MYTTN---FATKTLLLAMLFLWVRASYPRFRYDQLMHLLWKNFLPLTLSLCMWYI 305
Cdd:COG0650   249 TLLLAlllFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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