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Conserved domains on  [gi|1236513045|ref|YP_009412843|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Microcebus sambiranensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 5.17e-154

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 436.20  E-value: 5.17e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 SGQWTITNMdsNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIA 160
Cdd:MTH00105   81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00105  159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQFK 320
Cdd:MTH00105  239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                         330       340
                  ....*....|....*....|....*....
gi 1236513045 321 LKKRSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105  319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 5.17e-154

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 436.20  E-value: 5.17e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 SGQWTITNMdsNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIA 160
Cdd:MTH00105   81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00105  159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQFK 320
Cdd:MTH00105  239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                         330       340
                  ....*....|....*....|....*....
gi 1236513045 321 LKKRSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105  319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-300 9.07e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.43  E-value: 9.07e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIpILA--KNPKPRSTEAATKYFLTQATASMLLMF----------TIV 75
Cdd:COG1007   106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  76 FNAMHSGqwtITNMDSNNTLISFT---MIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIS----IMIQMF 148
Cdd:COG1007   185 LAGIAAA---LAAGGANSPLLLLGlvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAF 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 149 PSINH---NTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSM----TMLNLFIYLMLTITMFTML 221
Cdd:COG1007   262 PGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 222 NM----NMNTTTLT-LSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYM 296
Cdd:COG1007   342 LLlsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ....
gi 1236513045 297 RLIY 300
Cdd:COG1007   422 RVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-299 1.57e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.87  E-value: 1.57e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILA-KNPKPRSTEAATKYFLTQATASMLLMF----------TIVF 76
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  77 NAMHSGQWTITNMDSNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSI----- 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 152 --NHNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITM----FTML---- 221
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsllr 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 222 --NMNMNTTTLTLSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLI 299
Cdd:TIGR01770 346 syKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-282 2.03e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.15  E-value: 2.03e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  23 SSHWLLIWIGLEINMLSIIPILAKNPK-PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNMD---------SN 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnsSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  93 NTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLL-TWQKLAPISIMIQMFPSIN-----HNTLMLIALLSVLA 166
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 167 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTML---------NMNMNTTTLTLSNLWN 237
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1236513045 238 KLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILAT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVL 285
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 5.17e-154

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 436.20  E-value: 5.17e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 SGQWTITNMdsNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIA 160
Cdd:MTH00105   81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00105  159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQFK 320
Cdd:MTH00105  239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                         330       340
                  ....*....|....*....|....*....
gi 1236513045 321 LKKRSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105  319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 7.97e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 334.08  E-value: 7.97e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 SGQWTITNMdsNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSiNHNTLMLIA 160
Cdd:MTH00135   81 TGQWDIQQM--SHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00135  158 LTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAP 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQFK 320
Cdd:MTH00135  238 ALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLP 317

                         330       340
                  ....*....|....*....|....*...
gi 1236513045 321 LKKRSLLLSPLIILSTLSLPLSPMFSTL 348
Cdd:MTH00135  318 STQLTLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-348 6.76e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 314.07  E-value: 6.76e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 SGQWTITNMdsNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIA 160
Cdd:MTH00112   81 TGQWDITQL--TNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00112  159 ILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQFK 320
Cdd:MTH00112  239 TLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK 318

                         330       340
                  ....*....|....*....|....*...
gi 1236513045 321 LKKRSLLLSPLIILSTLsLPLSPMFSTL 348
Cdd:MTH00112  319 PKKNTLTATLTTLSTLL-LPLSPMILTI 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-343 2.03e-104

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 310.31  E-value: 2.03e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 SGQWTITNMDSNNTLISFTMivALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIA 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTI--ALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00070  159 LLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQFK 320
Cdd:MTH00070  239 TLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK 318

                         330       340
                  ....*....|....*....|...
gi 1236513045 321 LKKrSLLLSPLIILSTLSLPLSP 343
Cdd:MTH00070  319 NKT-NNLLSLTIILSLMLLPITP 340
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-308 4.90e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 240.22  E-value: 4.90e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 SGQWTItnMDSNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIA 160
Cdd:MTH00041   81 SGSWSI--NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00041  159 ILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNP 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFP 308
Cdd:MTH00041  239 ISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-348 1.10e-76

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 239.49  E-value: 1.10e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 SGQWTITNMDSNNTLisFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIA 160
Cdd:MTH00200   81 SGQWGISEMLGPLSE--TLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00200  159 LLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQFK 320
Cdd:MTH00200  239 ILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTK 318

                         330       340
                  ....*....|....*....|....*...
gi 1236513045 321 LKKrSLLLSPLIILSTLSLPLSPMFSTL 348
Cdd:MTH00200  319 SNS-NLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 4.91e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 165.00  E-value: 4.91e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   1 MKPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  81 sgqwtitNMDSNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpsiNHNTLMLIA 160
Cdd:MTH00160   81 -------NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIII 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLP 240
Cdd:MTH00160  151 ILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSK 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 241 TITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMkwqFK 320
Cdd:MTH00160  231 KIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK---KK 307

                         330       340
                  ....*....|....*....|....*
gi 1236513045 321 LKKRSLLLSPLIILSTLSLPLSPMF 345
Cdd:MTH00160  308 KNKFSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 10-321 9.84e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 156.20  E-value: 9.84e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  10 MMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWtitnm 89
Cdd:MTH00144   10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW----- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  90 dsnntLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINH-NTLMLIALLSVLAGG 168
Cdd:MTH00144   85 -----FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 169 WGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMnttTLTLSNLWNKLPTITTMFLV 248
Cdd:MTH00144  160 IGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGD---SGSMKDLGSLKPSYKTGLSI 236

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236513045 249 SLLSLGGLPP--LTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQFKL 321
Cdd:MTH00144  237 ISLLLSLGGLppFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-301 1.91e-40

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 144.92  E-value: 1.91e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   6 LMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWT 85
Cdd:MTH00011    8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  86 ITNmdsnntliSFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIALLSVL 165
Cdd:MTH00011   88 NIT--------ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 166 AGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLPTITTM 245
Cdd:MTH00011  160 AGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMS 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236513045 246 FLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYS 301
Cdd:MTH00011  240 LFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-319 2.44e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 128.25  E-value: 2.44e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   7 MIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFtivfnamhsGQWTI 86
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLM---------GGSLS 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  87 TNMDSNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIsiMIQMFPSINHNTLMLIALLSVLA 166
Cdd:MTH00197   72 FSNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLI 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 167 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWNKLPTITTMF 246
Cdd:MTH00197  150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236513045 247 LVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQF 319
Cdd:MTH00197  230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLL 302
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-324 7.90e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 107.41  E-value: 7.90e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILA-KNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  87 TNMDSNNT------LISftmiVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINhnTLMLIA 160
Cdd:MTH00199  181 QGINSILTgdvgkiLIT----ISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICA 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMG---WMMAILMFCP-SMTMLNLFIYLMLTITMFTMLnMNMNTTT---LTLS 233
Cdd:MTH00199  255 VLSIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSII-LSLKLTKgliVEVS 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 234 NLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIystSLTLFPMPNNI 313
Cdd:MTH00199  334 GLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVV---QIIYFQADYSI 410

                         330
                  ....*....|.
gi 1236513045 314 kMKWQFKLKKR 324
Cdd:MTH00199  411 -LIWQKVLKKE 420
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-300 9.07e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.43  E-value: 9.07e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIpILA--KNPKPRSTEAATKYFLTQATASMLLMF----------TIV 75
Cdd:COG1007   106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  76 FNAMHSGqwtITNMDSNNTLISFT---MIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIS----IMIQMF 148
Cdd:COG1007   185 LAGIAAA---LAAGGANSPLLLLGlvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAF 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 149 PSINH---NTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSM----TMLNLFIYLMLTITMFTML 221
Cdd:COG1007   262 PGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 222 NM----NMNTTTLT-LSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYM 296
Cdd:COG1007   342 LLlsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ....
gi 1236513045 297 RLIY 300
Cdd:COG1007   422 RVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-299 1.57e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.87  E-value: 1.57e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILA-KNPKPRSTEAATKYFLTQATASMLLMF----------TIVF 76
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  77 NAMHSGQWTITNMDSNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSI----- 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 152 --NHNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITM----FTML---- 221
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsllr 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 222 --NMNMNTTTLTLSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLI 299
Cdd:TIGR01770 346 syKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-282 2.03e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.15  E-value: 2.03e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  23 SSHWLLIWIGLEINMLSIIPILAKNPK-PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNMD---------SN 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnsSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  93 NTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLL-TWQKLAPISIMIQMFPSIN-----HNTLMLIALLSVLA 166
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 167 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTML---------NMNMNTTTLTLSNLWN 237
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1236513045 238 KLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILAT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVL 285
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-299 1.31e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 97.02  E-value: 1.31e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  16 GTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKP-RSTEAATKYFLTQATASMLLMF--TIVFNAMHSGQWTITNMDSN 92
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFgcALLCGTTGGLHLSYINLVLN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  93 NTLI---------SFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINhnTLMLIALLS 163
Cdd:MTH00196   85 SGQSfssvsvpigYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 164 VLAGGWGGLNQTQLRKILAYSSIAHMG---WMMAILMF-CPSMTMLNLFIYLMLTITMFTM-LNMNMNTTTLT-LSNLWN 237
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFSIiLALNVYKNLIIeFSGLSR 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236513045 238 KLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLI 299
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
15-299 1.96e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 91.81  E-value: 1.96e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  15 TGTMLTMISS-HWLLIWIGLEINMLS--IIPILAKNpKPRSTEAATKYFLTQATASMLLMF----------TIVFNAMHS 81
Cdd:PRK05777  113 LLGMMVMVSAnDLLTLFLGLELLSLPlyALAALRRD-RRRSLEAAIKYFVLGALASGFLLYgmsllygatgSLSFAGIAK 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  82 gqwTITNMDSNNTLISFT---MIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMF-------PSI 151
Cdd:PRK05777  192 ---ALADGSGNSLLLLFGlvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLvvafgglSED 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 152 NHNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM-AILMFCPSM---TMLNLFIYLMLTITMFTMLNM---- 223
Cdd:PRK05777  269 WQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvGLAAGTAEGysaVLFYLLAYLFMTLGAFGVISLlrrk 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236513045 224 NMNTTTLT-LSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLI 299
Cdd:PRK05777  349 GGEAESISdFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-303 9.44e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.80  E-value: 9.44e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  15 TGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNM----- 89
Cdd:COG0651   118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarla 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  90 --DSNNTLISFTMI-VALTMKLGMTPFHFWVPEV----TQGVS-LMTGMLLltwqKLAPISIM---IQMFPSIN----HN 154
Cdd:COG0651   198 elDPGLLLAAFALLlVGFGIKAALFPLHFWLPDAypaaPSPVSaLLSGLLT----KVGVYAILrvlTLLFGADPalflGT 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 155 TLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYL---MLTITMFTMLNMNMNTTTLT 231
Cdd:COG0651   274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhALAKALLFLAAGAIERATGT 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236513045 232 -----LSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTS 303
Cdd:COG0651   354 rdldkLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-193 8.29e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 66.04  E-value: 8.29e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  16 GTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRST---------EAATKYFLTQATASMLLMFTIVF---------- 76
Cdd:MTH00198  200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALyfgftgnegm 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  77 -NAMHSGQWTITNMDSNNTLISFTMI-VALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpsINHN 154
Cdd:MTH00198  280 lGTILSATLETTNIELRQGSLGYLFItVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV--ITSK 357

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1236513045 155 TLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:MTH00198  358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-194 1.82e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.94  E-value: 1.82e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  55 AATKYFLTQATASMLLMFTIVFNAMHSGQWTI-------TNMDSN-NTLISFTMIVALTMKLGMTPFHFWVPEV-----T 121
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTFdiaelaaAPLPLTaQLLLFLAFFIAFAVKVPMFPFHTWLPDAhveapT 241

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236513045 122 QGVSLMTGMLLltwqKLAP---ISIMIQMFPSINH---NTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMA 194
Cdd:COG1008   242 AGSVLLAGVLL----KMGGyglLRFALPLFPEASAyfaPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
7-299 5.98e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 57.37  E-value: 5.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   7 MIIMMTIFTGTMLTMISSHWLLIWIGLEinMLSIIPILAK---NPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQ 83
Cdd:PRK02504  113 AAILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGG 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  84 WT--------ITNMDSNNTLISFTMIVA-LTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLA----PISIMIQMFPS 150
Cdd:PRK02504  191 STqlsaialaLITSPSLGLALALVFVIAgIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPS 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 151 IN---HNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMaILMFCP-----SMTMLNLFIYLMLTITMFTMLN 222
Cdd:PRK02504  271 FDeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM-IGLVAGteagyASMVFYLLAYLFMNLGAFACVI 349

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 223 M-NMNTTTLTLSN---LWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRL 298
Cdd:PRK02504  350 LfSLRTGTDQISDyagLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429


                  .
gi 1236513045 299 I 299
Cdd:PRK02504  430 I 430
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 55-193 1.20e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 56.36  E-value: 1.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  55 AATKYFL-TQAT-----ASMLLMFTIVFNAMHS---GQWTITNMDSN-NTLISFTMIVALTMKLGMTPFHFWVPEV---- 120
Cdd:PRK05846  162 AATKFFLyTLLGsllmlVAIIYLVVVYYNATGTfdiADLLNLPLPPGvQYWLFLAFFIAFAVKMPMFPLHTWLPDAhvqa 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 121 -TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNTLMLIALLSVLA---GGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK05846  242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAYSSISHMGFVT 317
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 6-270 1.66e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 55.72  E-value: 1.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   6 LMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLL---MFTIVFNAMHSG 82
Cdd:TIGR01972 108 FYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMllaILGLYFLGGGTF 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  83 Q---WTITNMDSNNTLISFTMI-VALTMKLGMTPFHFWVPEV-----TQGVSLMTGMLLltwqKLAPISIM---IQMFPS 150
Cdd:TIGR01972 188 DlleLLNLPLPFGVQTWLFLAFfIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLrfnLPLFPD 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 151 INHNTLMLIALLSVLA---GGWGGLNQTQLRKILAYSSIAHMGW-MMAILMFCPS------MTMLNLFIYLMLTITMFTM 220
Cdd:TIGR01972 264 ASLYFAPVLAALGVIAiiyGALIALAQTDIKRLIAYSSISHMGFvLLGIFSFNELgisgavFQMISHGLITAALFLLVGV 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236513045 221 LNMNMNTTTLT-LSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQ 270
Cdd:TIGR01972 344 LYERAHTRDIAkYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-193 1.70e-08

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 55.81  E-value: 1.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   2 KPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHS 81
Cdd:PRK12561   85 KPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSG 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  82 GQWT--ITNMDSNNTLISFTM------IVALTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:PRK12561  165 DTFTfdLAELGAKSYPLALELllyagfLIAFGVKLPIFPLHTWLPdahgEASAPVSMILAGVLLKMGGYALIRFNVQMLP 244

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1236513045 150 SINHNTLMLIALLSVLAGGWGGLN---QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK12561  245 DAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVL 291
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-217 9.83e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 53.47  E-value: 9.83e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  51 RSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWT--------ITNMDSNNTLISFT----MIVALTMKLGMTPFHFWVP 118
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFSWLYGLSGGEIelqeivngLINTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 119 EVTQGVSLMTGMLLLTWQKLAPISIMIQM----FPSIN---HNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGW 191
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAASALATRIfdipFYFSSnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180
                  ....*....|....*....|....*..
gi 1236513045 192 MM-AILMFCPSMTMLNLFIYLMLTITM 217
Cdd:CHL00049  319 VIiGIIVGDSNDGYASMITYMLFYIFM 345
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-301 6.69e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.87  E-value: 6.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  33 LEINMLSIIPILA-KNPKPRSTEAATKYFLTQATASMLLMFTIvfnAMHSGQWTITNMDSNNTLISFTM----------- 100
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMSENPtvvakialalf 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 101 IVALTMKLGMTPFHFWVPEV-TQGVSLMTGMLLLTWQ----KLAPISIMIqMFPSINHNTL----MLIALLSVLAGGWGG 171
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSI-YGPAINLATVgwviIILGCLTMFVGVAMA 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 172 LNQTQLRKILAYSSIAHMGWMM---AILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTL-----------------T 231
Cdd:PRK08376  306 VVQKDVKRLLAYHSVSQIGYMLlglGVGLAALGDPAMASYGEIALAGGIYHIVNHALYKALLfltagaviyetgtrnlnE 385

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 232 LSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIqELTKNNNIILATMMAIMALLNLYFYMRLIYS 301
Cdd:PRK08376  386 LGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIY-ESSALFNPILGVIAMIGSVLTLASFVKVFHT 454
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 4-288 8.64e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 50.53  E-value: 8.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   4 LILMIIMMTIFTGTMLTMisshwLLIWIGLEINMLsIIPILAKNPKPRSTEAATKyfLTQATASMLLMFTIVFnAMHSGQ 83
Cdd:MTH00207   96 LFVLSMNMLIFFPHLMIL-----LLGWDGLGLVSF-ILVIYYQNPKSLGAGMITA--LTNRIGDVMLLLSIGW-TLNQGH 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  84 WTITNMDSN--NTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSIN-----HNTL 156
Cdd:MTH00207  167 WSITNMWQTdmNNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSstywfNPAL 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 157 MLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILmfcpSMTMLNLFIYLMLTITMF---------TMLNMNMNT 227
Cdd:MTH00207  247 LLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASL----GLGMPKLALFHLITHALFkallfvcagSLIHSHHHS 322

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236513045 228 TTL-TLSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMA 288
Cdd:MTH00207  323 QDLrTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLA 384
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-193 3.94e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.34  E-value: 3.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  33 LEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQwtiTNM---------DSNNTLISFTMIVA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGT---LNMadlagalaeNPTVVTAFGFVLLA 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 104 LTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP------SINHNTLMLIALLSVLAGGWGGLN 173
Cdd:PRK08375  212 LALKAAVFPLHTWLPraypAAPPVVTALLSGLVTKVAVYALIRIYFTVFGgdfrfaLGLGWLLAVLALLSMLVGSLAALG 291

                         170       180
                  ....*....|....*....|
gi 1236513045 174 QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK08375  292 QDDVKRVLAYSTVSQMGYIL 311
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 49-301 7.95e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 47.66  E-value: 7.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  49 KPRSTEAATKYFLTQATASMLLMFTIVF--------------NAMHSGQWTITNMDSNNTLISFTMIVAL-----TMKLG 109
Cdd:PRK12667  159 RGDAVEAAIKYALIGAVGTTLYFLALAFlyatfgtlnmadlsAKIRGLSFPLTGGLAGNPPLALGVALALalwafTIKAA 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 110 MTPFHFWVPEV----TQGVSLMTGMLLLTWQKLAPISIMIQMFPSINH---------NTLMLIALLSVLAGGWGGLNQTQ 176
Cdd:PRK12667  239 IFPNHFWLPDAhpaaPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSlidfraalsPILIILGAVSAIIGALMMVVQKD 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 177 LRKILAYSSIAHMGW-MMAILMFCPsmtmlnlfiyLMLTITMFTMLNMNMNTTTLTLSN-----------------LWNK 238
Cdd:PRK12667  319 VKRLLAYSTISHMGYiFMGIGIGTQ----------LGLAAALFHIINHAIAKSLLFLASgvfihaagtrdidelagLGRK 388

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236513045 239 LPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYS 301
Cdd:PRK12667  389 MPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-301 2.68e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 45.96  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  17 TMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMF---TIVFNAMHSGQWTITNMDSNN 93
Cdd:PRK06589  129 GVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpavILIYTKTGNLDFVSGGLFSKN 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  94 T-LISFTMIVALTMKLGMTPFHFWVPE-----------------VTQGVSLMTGMLLLTWqKLAPISIMIQMFpsinhNT 155
Cdd:PRK06589  209 QsIILLLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSYLQRIFAEF-----NW 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 156 LMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM--AILMFCPSM--TMLNLFIYLMLTITMF-TMLNMNMNTTTL 230
Cdd:PRK06589  283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALgaAILHLVSHSFAKICLFySMGSIYSLKKED 362

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236513045 231 TLSNLWN---KLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIM----ALLNLYFYMRLIYS 301
Cdd:PRK06589  363 QVDKLHGtskSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSALYLLKILSS 440
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
85-193 3.73e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 45.47  E-value: 3.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  85 TITNMDSNNTLISFTMI-VALTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP---SINHNTL 156
Cdd:PRK07363  195 STQNLSLNTQLILLTGLlLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAKLGTYGLLRFGLQLFPqtwSLVAPGL 274

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1236513045 157 MLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK07363  275 AIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYIL 311
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 293-343 4.18e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 40.70  E-value: 4.18e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236513045 293 YFYMRLIYSTSLTLFPMPNNIKMKWQFKLKKRSLLLSPLIILSTLSLPLSP 343
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
100-193 8.16e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.31  E-value: 8.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 100 MIVALTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP---SINHNTLMLIALLSVLAGGWGGL 172
Cdd:PRK06473  211 ILVGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPeawVYLAPWLATWAVVSVLYGASCAI 290

                          90       100
                  ....*....|....*....|.
gi 1236513045 173 NQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK06473  291 AQKDMKKMVAYSSIGHMGYIL 311
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 11-302 2.31e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  11 MTIFTGTMLTM-ISSHWLLIWIGLEI-NMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITN 88
Cdd:COG1009   117 LLLFMAAMLGLvLSDNLLLLFVFWELvGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSE 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  89 MDSN-NTLISFTMIVALTM--------KLGMTPFHFWVPE-----------------VTQGVSLMTgmllltwqKLAPIS 142
Cdd:COG1009   197 LLAAaPTILSSPLLTLILLllllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RLSPLF 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 143 IMIQMFpsinHNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILmfcpSMTMLNLFIYLMLTITMF-TML 221
Cdd:COG1009   269 ALSPVW----LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkALL 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 222 NM-------NMNTTTLT-LSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQEL--TKNNNIILATMMAIMALLN 291
Cdd:COG1009   341 FLgagsvihATGTRDIRkMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLT 420

                         330
                  ....*....|.
gi 1236513045 292 LYFYMRLIYST 302
Cdd:COG1009   421 AFYSFRLFFLV 431
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 102-213 2.60e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 42.73  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 102 VALTMKLGMTPFHFWVPEV-----TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNTLMLIALLSVLAGGWGGLN 173
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGGygfIRFSWPLLPEASEYFSPLIQTLSLLAIIYGSLT 289

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1236513045 174 ---QTQLRKILAYSSIAHMGwMMAILMFCPSMTMLNLFIYLML 213
Cdd:MTH00217  290 tcrQVDLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLML 331
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 10-192 6.47e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 41.45  E-value: 6.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  10 MMTIFTGTML-TMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFL------TQATASMLLMFTIVFNAMHSG 82
Cdd:PRK06458  113 MYQLFLFTMLlALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDG 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  83 Q----WTITNM---DSNNTLISFTMIVALT---MKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMF 148
Cdd:PRK06458  193 EmailWTELLKhasLLDPTLMKLAFVFLLIgfgTKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRYYILID 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1236513045 149 PSINHN---TLMLI-ALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWM 192
Cdd:PRK06458  273 AAIGSDfpgRLLLIfGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 4-193 1.18e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.51  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   4 LILMIIMMTIFTGTMLtmisshwlLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATA------SMLLMFTIVFN 77
Cdd:PRK08676  110 LLLSVITFAFFSDNLA--------LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQ 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  78 AMHSG--QWT-----ITNMDSNNTLISFT-MIVALTMKLGMTPFHFWVPEV-TQGVSLMTGMLLLTWQKLAPISImIQMF 148
Cdd:PRK08676  182 ALGTGtlNWTelaahASLLSPSVLGASFLfIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGI-LRLS 260

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1236513045 149 P--------SINHNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK08676  261 AllrqsgaaEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
PRK12650 PRK12650
DUF4040 family protein;
79-194 2.23e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.03  E-value: 2.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  79 MHSGQWTitNMDSNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQmFPSINHNT--- 155
Cdd:PRK12650  195 LHSDVWA--EKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLR-FSPVFHDVavw 271

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1236513045 156 ---LMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMA 194
Cdd:PRK12650  272 nwlLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVA 313
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 104-319 2.28e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 39.08  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 104 LTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNTLMLIALLSVLAggwgGLNQTQLRKILAY 183
Cdd:MTH00091   67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQ----MFLLKSYKNLLIL 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 184 SSIAHMGWMMAILMFCPSMTMlnlFIYLMLTITMFTMLNMnmntttltlsnlWNKLPTITTMFLVSLLSLGGLPPLTGFL 263
Cdd:MTH00091  143 SSTESFNWLILSFFFSFFNVF---FLFFYYFLLMLFLIPK------------FNNVNKLNFVSWETLLVFMNLPFSVTFF 207

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236513045 264 PKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLIYSTSLTLFPMPNNIKMKWQF 319
Cdd:MTH00091  208 VKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFF 263
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 102-213 2.42e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 39.66  E-value: 2.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 102 VALTMKLGMTPFHFWVPEV-----TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNTLMLIALLSVLAGGWGGL- 172
Cdd:MTH00204  217 LSLAVKIPQIPFHIWLPQAhveapVAGSVILAGILL----KLGGygfLRFSWPLFPAASEYFAPLIVMLSVIAVIYGSLt 292

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1236513045 173 --NQTQLRKILAYSSIAHMGwMMAILMFCPSMTMLNLFIYLML 213
Cdd:MTH00204  293 tcRQVDFKRLIAYSSVAHMG-LVPLGLFTHTIEGLVAAVFLML 334
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
94-298 3.03e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.16  E-value: 3.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  94 TLISFTMIVALTMKLGMTPFhFWVPEVTQ----GVSLMTGMLLLTWQKLAPISIMIQMFP---SINHNTLMLIALLSVLA 166
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHtpntEVAALFAALLTKVGIYALIRVFTLLFPqerELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 167 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTML--------NMNMNTTTLTLSNLWNK 238
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALfliagslvRLTGYRSLQYLGGLYRK 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 239 LPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRL 298
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 95-270 3.28e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.17  E-value: 3.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  95 LISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHN--TLMLIALLSVLAGGWG-- 170
Cdd:MTH00032  226 IIGILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAplTLLIITIFGALTAFFAat 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 171 -GLNQTQLRKILAYSSIAHMGWMMAILMFCPS--MTMLNLFIYLMLTITMFTMLNMNMNTTTL------TLSNLWNKLPT 241
Cdd:MTH00032  306 vGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGShnVGLFHLVNHAFFKALLFLSAGSVIHSTTVdeqdmrKMGGLIHSIPF 385

                         170       180
                  ....*....|....*....|....*....
gi 1236513045 242 ITTMFLVSLLSLGGLPPLTGFLPKWLIIQ 270
Cdd:MTH00032  386 TYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 70-305 3.57e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 39.29  E-value: 3.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  70 LMFTIVFNAMhsgqwtITNMDSNNTLISFTMIVALTMKLGMTPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:MTH00020  192 LDFSSVFNMV------VSAPSSDITLICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSP 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 150 SINHNTLMLIAL-----LSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFcpSMTMLNLFiYLMLTITMFTMLNMN 224
Cdd:MTH00020  266 LFEQAPLALIIVtivgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGL--SHYSISLF-HLMNHAFFKALLFLS 342

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 225 MNTTTLTLSN---------LWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIM-ALLNLYF 294
Cdd:MTH00020  343 AGSVIHALSDeqdmrkmggLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFsALLTAFY 422

                         250
                  ....*....|.
gi 1236513045 295 YMRLIYSTSLT 305
Cdd:MTH00020  423 SIRLIYLTFLS 433
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-299 3.66e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 3.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  14 FTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNM---- 89
Cdd:PRK12662  120 LGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMflii 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  90 ---DSNNT--LISFTMIVALTMKLGMTPFHFW-VPEVTQGVSLMTGMLLLTWQKLApISIMIQMFPSINH---------- 153
Cdd:PRK12662  200 qdlPTNRAiqIGVLFIMVGLFIKAALFPFHKWlIQAYSEAPSFISVFFSGTSTKVM-IYLIIRIVYDVFKanfvfttlpf 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045 154 -NTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMNM------- 225
Cdd:PRK12662  279 nNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSgsisyhf 358

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236513045 226 -NTTTLTLSNLWNKLPTITTMFLVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIILATMMAIMALLNLYFYMRLI 299
Cdd:PRK12662  359 gTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIV 433
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-193 9.47e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 37.76  E-value: 9.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045   2 KPLILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHS 81
Cdd:PRK02546  113 KPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAALAMAFYG 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236513045  82 GQWT--ITNMDSNNTLISFTM------IVALTMKLGMTPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:PRK02546  193 DTPTfdMTALAAKDFGLGFQLlcyaglLIAYGVKLPIVPLHTWLPdahgEATAPVHMLLAGILLKMGGYALLRMNAGMLP 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1236513045 150 SINHNTLMLIALLSVLAGGWGGLN---QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK02546  273 DAHAQFAPLLIVLGVVNIIYAALTsfaQRNLKRKIAYSSISHMGFVL 319
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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