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Conserved domains on  [gi|1236518625|ref|YP_009414293|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Cheirogaleus sibreei]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 8.32e-65

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 191.69  E-value: 8.32e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625   1 MNLPLTLSIDILLVLALVLIAFWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518625  81 TNNLKLMATVALMLITILALSLAYEWLQKGLEWEE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 8.32e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 191.69  E-value: 8.32e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625   1 MNLPLTLSIDILLVLALVLIAFWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518625  81 TNNLKLMATVALMLITILALSLAYEWLQKGLEWEE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
22-112 1.34e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 104.43  E-value: 1.34e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  22 FWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMATVALML-ITILAL 100
Cdd:pfam00507   5 RLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIfIAILLV 82

                          90
                  ....*....|..
gi 1236518625 101 SLAYEWLQKGLE 112
Cdd:pfam00507  83 GLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-113 2.05e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 84.40  E-value: 2.05e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMATVALML-ITILALSLAYEWLQKG 110
Cdd:COG0838    37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFGLIEMLVfIAILLVGLIYAWKKGA 114


                  ...
gi 1236518625 111 LEW 113
Cdd:COG0838   115 LEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 8.32e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 191.69  E-value: 8.32e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625   1 MNLPLTLSIDILLVLALVLIAFWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518625  81 TNNLKLMATVALMLITILALSLAYEWLQKGLEWEE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 4.48e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 136.59  E-value: 4.48e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625   1 MNLPLT-LSIDILLVLALVLIAFWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00136    1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1236518625  80 QTNNLKLMATVALMLITILALSLAYEWLQKGLEWEE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 22-115 1.02e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 133.20  E-value: 1.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  22 FWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKLMATVALMLITILALS 101
Cdd:MTH00069   21 FWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTLG 100

                          90
                  ....*....|....
gi 1236518625 102 LAYEWLQKGLEWEE 115
Cdd:MTH00069  101 LIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 2.01e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 127.30  E-value: 2.01e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625   1 MNLPLTLSIDILLVLALVLIAFWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1236518625  81 TNNLKLMATVALMLITILALSLAYEWLQKGLEW 113
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 3.70e-33

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 111.61  E-value: 3.70e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625   1 MNLPLTLSIDILLVLALVLIAFWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518625  81 TNNLKLMATVALMLITILALSLAYEWLQKGLEWEE 115
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 22-113 3.44e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 106.52  E-value: 3.44e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  22 FWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKLMatVALMLITILALS 101
Cdd:MTH00203   23 FWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLL--LAFLFLILLTLG 100

                          90
                  ....*....|..
gi 1236518625 102 LAYEWLQKGLEW 113
Cdd:MTH00203  101 LIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
22-112 1.34e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 104.43  E-value: 1.34e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  22 FWLPQLNIYTEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMATVALML-ITILAL 100
Cdd:pfam00507   5 RLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIfIAILLV 82

                          90
                  ....*....|..
gi 1236518625 101 SLAYEWLQKGLE 112
Cdd:pfam00507  83 GLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 2.66e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 91.38  E-value: 2.66e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKLMATVALMLITILALSLAYEWLQKGL 111
Cdd:MTH00161   32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                  ..
gi 1236518625 112 EW 113
Cdd:MTH00161  112 EW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 32-115 3.75e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 88.76  E-value: 3.75e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKLMATVALMLITILALSLAYEWLQKGL 111
Cdd:MTH00148   34 EKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFIFLLILILGLFHEWNEGSL 113


                  ....
gi 1236518625 112 EWEE 115
Cdd:MTH00148  114 DWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 32-113 1.31e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 85.04  E-value: 1.31e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKLMATVALMLITILALSLAYEWLQKGL 111
Cdd:MTH00202   34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSL 113


                  ..
gi 1236518625 112 EW 113
Cdd:MTH00202  114 DW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-113 2.05e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 84.40  E-value: 2.05e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMATVALML-ITILALSLAYEWLQKG 110
Cdd:COG0838    37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFGLIEMLVfIAILLVGLIYAWKKGA 114


                  ...
gi 1236518625 111 LEW 113
Cdd:COG0838   115 LEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-114 3.16e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 83.99  E-value: 3.16e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  31 TEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMAT-VALMLITILALSLAYEWLQK 109
Cdd:MTH00055   36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIGLFGFwVMYLFLIILTIGLIYEWVKG 113


                  ....*
gi 1236518625 110 GLEWE 114
Cdd:MTH00055  114 GLEWE 118
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-113 8.14e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 80.29  E-value: 8.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKLMATVALMLITILALSLAYEWLQKGL 111
Cdd:MTH00012   34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                  ..
gi 1236518625 112 EW 113
Cdd:MTH00012  114 DW 115
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 32-114 4.87e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 78.37  E-value: 4.87e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMATVALML-ITILALSLAYEWLQKG 110
Cdd:PRK06602   40 EKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGWLGFVEAMIfILVLLVGLVYLWRKGA 117


                  ....
gi 1236518625 111 LEWE 114
Cdd:PRK06602  118 LDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-114 1.65e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 77.02  E-value: 1.65e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMATVALML-ITILALSLAYEWLQKG 110
Cdd:MTH00018   32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPFGFWTMVGfLFILTLGLIYEWIKGG 109


                  ....
gi 1236518625 111 LEWE 114
Cdd:MTH00018  110 LEWE 113
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-114 1.76e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 74.58  E-value: 1.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  31 TEKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMAT-VALMLITILALSLAYEWLQK 109
Cdd:MTH00030   41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLFSFwIVYTFLIVLAIGLAYEWIKG 118


                  ....*
gi 1236518625 110 GLEWE 114
Cdd:MTH00030  119 GLEWD 123
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 8.13e-13

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 59.69  E-value: 8.13e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  33 KYNPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWASQTNNLKLMATVAlMLITILALSLAY--EWLQ 108
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFGLVE-MALFMLTVFVAYayVWRR 113


                  ....*.
gi 1236518625 109 KGLEWE 114
Cdd:PRK07928  114 GGLEWD 119
ndhC CHL00022
NADH dehydrogenase subunit 3
 32-113 4.86e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 57.69  E-value: 4.86e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMATV-ALMLITILALSLAYEWLQKG 110
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVSAFIeALIFVLILIVGLVYAWRKGA 116


                  ...
gi 1236518625 111 LEW 113
Cdd:CHL00022  117 LEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 3.28e-10

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 53.21  E-value: 3.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  32 EKYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWASQTNNLKLMATVA-LMLITILALSLAYEWLQKG 110
Cdd:PRK07756   41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFALIEmLIFVVMLLVGLAYAWKKKV 118


                  ...
gi 1236518625 111 LEW 113
Cdd:PRK07756  119 LQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-114 1.08e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.27  E-value: 1.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518625  33 KYNPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLKLMATV-ALMLITILALSLAYEWLQKGL 111
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFGLIeMLLFIVLLTIGFIYAWKKGAL 123


                  ...
gi 1236518625 112 EWE 114
Cdd:PRK08489  124 EWQ 126
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 33-73 3.58e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 39.88  E-value: 3.58e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1236518625  33 KYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092   34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-76 2.11e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.95  E-value: 2.11e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1236518625  34 YNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 33-101 7.90e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 33.81  E-value: 7.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518625  33 KYNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKLMATVALMLITILALS 101
Cdd:PRK06073   40 KVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFRDLLLLIVVALVLMYPVL 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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