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Conserved domains on  [gi|1236518646|ref|YP_009414312|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Phaner electromontis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 551.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646   1 MFPLNLLLLIVPVLLAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALS 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  81 IALIMWVPLPMPYPLINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 161 TLSTLTTTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518646 241 MFLGPSYNPYLSETNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPPLM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 551.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646   1 MFPLNLLLLIVPVLLAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALS 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  81 IALIMWVPLPMPYPLINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 161 TLSTLTTTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518646 241 MFLGPSYNPYLSETNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPPLM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
16-305 2.12e-115

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 335.21  E-value: 2.12e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 I--NMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLW 173
Cdd:pfam00146  92 VlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGpSYNPYLSE 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG-GWLGPFPL 250
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236518646 254 TNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:pfam00146 251 PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
16-299 1.34e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 311.29  E-value: 1.34e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPM--PY 93
Cdd:COG1005    25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  94 PLINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQE-HL 172
Cdd:COG1005   105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgGL 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLS 252
Cdd:COG1005   185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFPI 264
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236518646 253 ETNS-----INFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005   265 LPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 551.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646   1 MFPLNLLLLIVPVLLAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALS 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  81 IALIMWVPLPMPYPLINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 161 TLSTLTTTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518646 241 MFLGPSYNPYLSETNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPPLM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
16-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 509.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00111   21 AVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFPL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLI 175
Cdd:MTH00111  101 ADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEPLWLI 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLSETN 255
Cdd:MTH00111  181 FSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLPPELF 260
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236518646 256 SINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPPLM 318
Cdd:MTH00111  261 TINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
16-317 6.23e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 489.52  E-value: 6.23e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00071   21 AVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNNL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLI 175
Cdd:MTH00071  101 SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQEFMWLI 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLSETN 255
Cdd:MTH00071  181 IPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYNHLQPELS 260
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518646 256 SINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPPL 317
Cdd:MTH00071  261 TMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
16-316 1.40e-171

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 478.72  E-value: 1.40e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00134   22 AVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPV 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLI 175
Cdd:MTH00134  102 TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQESIWLL 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLSETN 255
Cdd:MTH00134  182 LPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIPTLPELT 261
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236518646 256 SINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPP 316
Cdd:MTH00134  262 TINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
16-316 1.55e-140

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 399.28  E-value: 1.55e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00218   18 AVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFSL 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLI 175
Cdd:MTH00218   98 INLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETIWLL 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYnpylsetN 255
Cdd:MTH00218  178 IPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSL-------T 250
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236518646 256 SINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPP 316
Cdd:MTH00218  251 TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
16-318 1.20e-139

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 397.81  E-value: 1.20e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00040   20 AVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPT 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLI 175
Cdd:MTH00040  100 LNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGSWLL 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLG-PSYNPYLSET 254
Cdd:MTH00040  180 FPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGgGSPFNEIFPI 259
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1236518646 255 NSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPPLM 318
Cdd:MTH00040  260 NIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
16-308 2.42e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 342.88  E-value: 2.42e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00195   18 AVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGF 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLI 175
Cdd:MTH00195   98 SSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWVI 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSynpylsetN 255
Cdd:MTH00195  178 LLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGG--------G 249
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1236518646 256 SINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLP 308
Cdd:MTH00195  250 TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIP 302
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
16-302 1.14e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 338.77  E-value: 1.14e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00143   17 AVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSS 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLI 175
Cdd:MTH00143   97 SYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLG 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLSetN 255
Cdd:MTH00143  177 FLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLFLL--G 254
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1236518646 256 SINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCM 302
Cdd:MTH00143  255 GVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
18-310 3.39e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 337.51  E-value: 3.39e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  18 AFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPLIN 97
Cdd:MTH00193   20 AFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNLIS 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  98 MNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLIIP 177
Cdd:MTH00193  100 FNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWFIFF 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 178 SWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYnpylsetNSI 257
Cdd:MTH00193  180 SFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDL-------LSL 252
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1236518646 258 NFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVM 310
Cdd:MTH00193  253 LFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
NADHdh pfam00146
NADH dehydrogenase;
16-305 2.12e-115

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 335.21  E-value: 2.12e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 I--NMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLW 173
Cdd:pfam00146  92 VlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGpSYNPYLSE 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG-GWLGPFPL 250
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236518646 254 TNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:pfam00146 251 PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
1-307 9.35e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 318.52  E-value: 9.35e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646   1 MFPLNLLLLIVPVLLAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALS 80
Cdd:MTH00225    2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  81 IALIMWVPLPMPYPLINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTF 160
Cdd:MTH00225   82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 161 TLSTLTTTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTI 240
Cdd:MTH00225  162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518646 241 MFLGPSYNpylseTNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISL 307
Cdd:MTH00225  242 LFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
16-299 1.34e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 311.29  E-value: 1.34e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPM--PY 93
Cdd:COG1005    25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  94 PLINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQE-HL 172
Cdd:COG1005   105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgGL 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLS 252
Cdd:COG1005   185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFPI 264
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236518646 253 ETNS-----INFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005   265 LPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
16-317 3.87e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 310.12  E-value: 3.87e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMW--VPLPMPY 93
Cdd:MTH00054   18 SIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWgvIPYGEGV 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  94 PLINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLW 173
Cdd:MTH00054   98 VLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNIW 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLSE 253
Cdd:MTH00054  178 FIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGPT 257
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518646 254 TNSIN---FAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPPL 317
Cdd:MTH00054  258 SYFSNfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPPF 324
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
16-307 2.60e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 303.19  E-value: 2.60e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMW--VPLPMPY 93
Cdd:MTH00216   22 AVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWgvIPYERGV 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  94 PLINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEH-L 172
Cdd:MTH00216  102 LISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQNNgI 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 173 WLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLS 252
Cdd:MTH00216  182 WFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGGWLSPIKY 261
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518646 253 -ETNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISL 307
Cdd:MTH00216  262 fKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
18-303 3.67e-99

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 294.79  E-value: 3.67e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  18 AFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPM--PYPL 95
Cdd:PRK06076   28 AFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFgpELVI 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLI 175
Cdd:PRK06076  108 ADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLSWNI 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLSETN 255
Cdd:PRK06076  188 IPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGGWLPPFPLGGG 267
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236518646 256 ---SINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:PRK06076  268 ipgAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
16-312 9.85e-93

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 278.20  E-value: 9.85e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00010   19 AMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPS 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQeHLWLI 175
Cdd:MTH00010   99 FFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ-YSWIL 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLSETN 255
Cdd:MTH00010  178 LMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFIPSIFISDLM 257
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518646 256 SInfaIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMAT 312
Cdd:MTH00010  258 LI---LKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
16-316 7.82e-85

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 259.18  E-value: 7.82e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYP- 94
Cdd:MTH00029   23 SVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDQGv 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  95 -LINMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLW 173
Cdd:MTH00029  103 fLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSVW 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLG--------- 244
Cdd:MTH00029  183 LIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGgwlspldgi 262
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518646 245 -------PSYNPYLSETNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPVMATYIPP 316
Cdd:MTH00029  263 ptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
16-307 9.59e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 200.51  E-value: 9.59e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPL 95
Cdd:MTH00090   12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDF 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  96 INMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTtqehLWLI 175
Cdd:MTH00090   92 LSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSFS----LSLF 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 176 IpswpLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYnpylsetn 255
Cdd:MTH00090  168 V----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSF-------- 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236518646 256 sinfaIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISL 307
Cdd:MTH00090  236 -----LMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVL 282
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
18-298 1.59e-52

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 174.34  E-value: 1.59e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  18 AFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPLIN 97
Cdd:MTH00058   19 AFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSY 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  98 MNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEHLWLIIP 177
Cdd:MTH00058   99 SSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLFP 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 178 swPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGpsynpylsetnSI 257
Cdd:MTH00058  179 --LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFG-----------GG 245
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1236518646 258 NFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00058  246 FVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
24-298 4.49e-47

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 162.04  E-value: 4.49e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  24 ERKILGYMQLRKGPNTVGPHGLLQPFADAVKLFIKEPLRPLTSSSLLYIIAPTLALSIALIMWVPLPMPYPLI--NMNMG 101
Cdd:CHL00032   51 EREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVlaDLSIG 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 102 LLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEH--LWliipSW 179
Cdd:CHL00032  131 VFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKygFW----GW 206
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 180 PL------TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPS------- 246
Cdd:CHL00032  207 NLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWnlsipyi 286
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236518646 247 YNPYLSETNSINFAIK-------TLLLAMLFLW----TRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:CHL00032  287 FIPELFEINKTGGVFGttigifiTLAKTYLFLFisitTRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
19-305 1.69e-28

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 111.43  E-value: 1.69e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  19 FFTLVERKILGYMQLRKGPntvgphGLLQPFADAVKLFIKEPLRPlTSSSLLYIIAPTLALSIALI--MWVPLPMPYPLI 96
Cdd:COG0650    20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVALAAMLLaaLLVPVLTTGPPL 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646  97 NMNMGLLFMLATSSLAVYSILWSGWSSNSKYALIGSLRAVAQTISYEVTLAIILLSTLLMNGTFTLSTLTTTQEH---LW 173
Cdd:COG0650    93 SFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAAhgpLL 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518646 174 LIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTIMFLGPSYNPYLSe 253
Cdd:COG0650   173 LSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLPWGIALTLL- 251
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236518646 254 TNSINFAIKTLLLAMLFLWTRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:COG0650   252 LALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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