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Conserved domains on  [gi|1236518653|ref|YP_009414319|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Phaner electromontis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.26e-67

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 198.63  E-value: 1.26e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   1 MNLPLTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518653  81 TNNLELMLLMALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.26e-67

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 198.63  E-value: 1.26e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   1 MNLPLTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518653  81 TNNLELMLLMALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 5.10e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 100.58  E-value: 5.10e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  18 VAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM-LLMALSLIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1236518653  97 ILALGLAYEWFQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-113 1.01e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.17  E-value: 1.01e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  11 ILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM-LL 89
Cdd:COG0838    16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLI 93

                          90       100
                  ....*....|....*....|....
gi 1236518653  90 MALSLISILALGLAYEWFQKGLEW 113
Cdd:COG0838    94 EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.26e-67

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 198.63  E-value: 1.26e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   1 MNLPLTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518653  81 TNNLELMLLMALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 1.28e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 143.14  E-value: 1.28e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   1 MNLPLT-LTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWAS 79
Cdd:MTH00136    1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1236518653  80 QTNNLELMLLMALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 2.39e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 134.74  E-value: 2.39e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   3 LPLTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTN 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1236518653  83 NLELMLLMALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 3.05e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 129.62  E-value: 3.05e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   1 MNLPLTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1236518653  81 TNNLELMLLMALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 3.61e-34

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 114.31  E-value: 3.61e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   1 MNLPLTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQ 80
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518653  81 TNNLELMLLMALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 5-113 9.82e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 105.36  E-value: 9.82e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   5 LTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTNNL 84
Cdd:MTH00203    6 LFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSL 85

                          90       100
                  ....*....|....*....|....*....
gi 1236518653  85 ELMllMALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00203   86 SLL--LAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 5.10e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 100.58  E-value: 5.10e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  18 VAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM-LLMALSLIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1236518653  97 ILALGLAYEWFQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 5-115 1.23e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 89.92  E-value: 1.23e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   5 LTLTIDILLVLFLVAIAFWMPQLNIY-VEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTNN 83
Cdd:MTH00148    6 LSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSF 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1236518653  84 LELMLLMALSLISILALGLAYEWFQKGLEWKE 115
Cdd:MTH00148   86 SVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 11-113 1.24e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 87.14  E-value: 1.24e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  11 ILLVLFLVAIAFWM--PQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTNNLELML 88
Cdd:MTH00161    9 ILLISIILMILASLlsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWL 88

                          90       100
                  ....*....|....*....|....*
gi 1236518653  89 LMALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00161   89 ITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 4.27e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 86.20  E-value: 4.27e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   1 MNLPLTLTIDILLVLFLVAIAFWM--PQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWA 78
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMlsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1236518653  79 SQTNNLELMLLMALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-113 1.01e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.17  E-value: 1.01e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  11 ILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM-LL 89
Cdd:COG0838    16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLI 93

                          90       100
                  ....*....|....*....|....
gi 1236518653  90 MALSLISILALGLAYEWFQKGLEW 113
Cdd:COG0838    94 EMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-114 3.60e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 78.60  E-value: 3.60e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  32 EKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTNNLELMLLMALSLIsILALGLAYEWFQKGL 111
Cdd:MTH00055   37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGGL 115


                  ...
gi 1236518653 112 EWK 114
Cdd:MTH00055  116 EWE 118
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-113 1.92e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 76.82  E-value: 1.92e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  32 EKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTNNLELMLLMALSLISILALGLAYEWFQKGL 111
Cdd:MTH00012   34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                  ..
gi 1236518653 112 EW 113
Cdd:MTH00012  114 DW 115
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-113 4.24e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 73.36  E-value: 4.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   7 LTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIplPWASQTNNLEL 86
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF--PWAVSFREIGW 92

                          90       100
                  ....*....|....*....|....*...
gi 1236518653  87 M-LLMALSLISILALGLAYEWFQKGLEW 113
Cdd:PRK06602   93 LgFVEAMIFILVLLVGLVYLWRKGALDW 120
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 13-113 2.28e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 71.89  E-value: 2.28e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  13 LVLFLVAIAFWMPQLNIYV-----EKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM 87
Cdd:MTH00030   18 IILLLVSISFTLGNSRIGLtkpdsEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLF 95

                          90       100
                  ....*....|....*....|....*..
gi 1236518653  88 -LLMALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00030   96 sFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-113 1.94e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 68.93  E-value: 1.94e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  32 EKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM--LLMALSLIsILALGLAYEWFQK 109
Cdd:MTH00018   32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPFgfWTMVGFLF-ILTLGLIYEWIKG 108


                  ....
gi 1236518653 110 GLEW 113
Cdd:MTH00018  109 GLEW 112
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 12-113 1.49e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 56.60  E-value: 1.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  12 LLVLFLVAIAFWMPQLNIYV---------EKYNPYECGFDPTGSARLP--FSMKFFLVAITFLLFDLEIALLIPlpWASQ 80
Cdd:PRK07928    7 ILVLGALAAAFAVVSVVVASlvgpkrynrAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVS 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1236518653  81 TNNLELMLLMALSL-ISILALGLAYEWFQKGLEW 113
Cdd:PRK07928   85 FDALGVFGLVEMALfMLTVFVAYAYVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 10-113 4.88e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 52.68  E-value: 4.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  10 DILLVLFLVA-----IAFWMPQL----NIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQ 80
Cdd:CHL00022    8 DIFWAFLIISslipiLAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMS 85

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1236518653  81 TNNLEL-MLLMALSLISILALGLAYEWFQKGLEW 113
Cdd:CHL00022   86 FDVLGVsAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-113 2.20e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.90  E-value: 2.20e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   7 LTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLEL 86
Cdd:PRK07756   16 LLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFL--YPWAVAYDKLGL 93

                          90       100
                  ....*....|....*....|....*...
gi 1236518653  87 MLLMA-LSLISILALGLAYEWFQKGLEW 113
Cdd:PRK07756   94 FALIEmLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 1.80e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 43.50  E-value: 1.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653  33 KYNPYECGFDPTGSARlPFSMKFFLVAITFLLFDLEIALLipLPWASQTNNLELM-LLMALSLISILALGLAYEWFQKGL 111
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFgLIEMLLFIVLLTIGFIYAWKKGAL 123


                  ..
gi 1236518653 112 EW 113
Cdd:PRK08489  124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-113 1.95e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.26  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   1 MNLPLTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLpwasq 80
Cdd:MTH00092    2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL----- 76

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1236518653  81 TNNLELMLLMALSLISILALGLAYEWFQKGLEW 113
Cdd:MTH00092   77 LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-76 2.39e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 34.87  E-value: 2.39e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1236518653  34 YNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLP 76
Cdd:MTH00060   38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 5-100 7.98e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 33.81  E-value: 7.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518653   5 LTLTIDILLVLFLVAIAFWMPQLNIYVEKYNPYECGFDPTGSARLPFSMKFFLVAITFLLFDLEIALLIPLPWASQTNNL 84
Cdd:PRK06073   12 LVIVLGLAAGVGTYKLLKLILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFR 91

                          90
                  ....*....|....*.
gi 1236518653  85 ELMLLMALSLISILAL 100
Cdd:PRK06073   92 DLLLLIVVALVLMYPV 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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