ribosomal protein S1 (mitochondrion) [Ancoracysta twista]
Protein Classification
S1 domain-containing protein( domain architecture ID 237)
S1 domain-containing protein may bind RNA
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| S1_like super family | cl09927 | S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ... |
128-191 | 6.61e-03 | ||
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold. The actual alignment was detected with superfamily member cd04465: Pssm-ID: 471952 [Multi-domain] Cd Length: 67 Bit Score: 33.97 E-value: 6.61e-03
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| Name | Accession | Description | Interval | E-value | ||
| S1_RPS1_repeat_ec2_hs2 | cd04465 | S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ... |
128-191 | 6.61e-03 | ||
S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Pssm-ID: 239911 [Multi-domain] Cd Length: 67 Bit Score: 33.97 E-value: 6.61e-03
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| Name | Accession | Description | Interval | E-value | ||
| S1_RPS1_repeat_ec2_hs2 | cd04465 | S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ... |
128-191 | 6.61e-03 | ||
S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog. Pssm-ID: 239911 [Multi-domain] Cd Length: 67 Bit Score: 33.97 E-value: 6.61e-03
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