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Conserved domains on  [gi|1464309010|ref|YP_009507360|]
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VP1 [Bocavirus pig/SX/China/2010]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Parvo_coat super family cl08286
Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these ...
112-582 1.40e-46

Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal region of VP1. VP2 is involved in packaging the viral DNA.


The actual alignment was detected with superfamily member pfam00740:

Pssm-ID: 395599  Cd Length: 518  Bit Score: 172.11  E-value: 1.40e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 112 ATGGWVGGTYFGKNKIVTNITRQWYVPIYNGHKY--------------TKQTETDNTNFWNGIRTPWGYINMNSYSCHFS 177
Cdd:pfam00740   5 STGNWHNDTTFMGNRVTCTATRTVHIPTYNNHLYkqfssqsttdtnasGKKANVSNDDHHFGYSTPWGYVDFNAWGVWFS 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 178 PNDWQRLLNNYKRWKPKKMRLQLYNLQIKQVVQL-GTDTLYNNDLTAGVHIMYDGSHQYPYSQSGWDSELIPELPGMIYK 256
Cdd:pfam00740  85 PRDFQRLINNNSGIRPVRLNQEIFNIQVKTVTENdGGGTIANNDLTATLQVAVDSEYILPYVLGAAHQETLPFFPWDVTM 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 257 LPNYCYF--QELGDIGDTGSDLRESWLGTAcpLFFLESSSHEVLRTGEETG-FEFDFDCGWVHNDRAFCPPQCD-FNPLI 332
Cdd:pfam00740 165 PPQYRYLtvNNVNTQGVGGDSVKLASERSQ--FYTLENFPIQLLRTGDNFAtGSYTFEDVPFHSSYAHSQSLDRlMNPLK 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 333 KTRR---SRI-----IMGSSGNTSEPYYDYK-KPSNWMPGPGTRLN--GHQSGNNLKTSSGPFNTSWAppGVTQ----GS 397
Cdd:pfam00740 243 LTYLyylSRLgtpsgTTTQSRLQFSQASDIRdQSRNWLPGPCYRQQtvSKTSADNNNAGAGKAQGSWT--GTTQyglnGE 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 398 DTTYLNSPAM-NRSQWASKSMPTAPANAACSQVDPNSLAFNEPTQLGQQGDTNIRYnniSNDLTRWGTVWSQSQQ----- 471
Cdd:pfam00740 321 DIRVRPGPVGaSYPHWDEKAFPQGGVAIFGPQGSEDTTVGIEKVMITDEQNGSTRY---PYAKEQYGSNSTNLLRglerh 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 472 -VYTSQPTQTRLDTVWQYPMQA--WNGQEVTRYAPIWDKQPNTD-YHTTLSSSDGTLPMKHPPGNIFIKVAKIPIPTETN 547
Cdd:pfam00740 398 tYFPNNGTAQTADLNTPPVLPGmvWNDRDVHFEGQIWDKIPHLDgHFKPSFPLMGGFGLKNPPPQIFVKLTPVPANLTTT 477
                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1464309010 548 TDsylniYCTGQIPIEIEWDAEGYETKNWRPELRI 582
Cdd:pfam00740 478 TQ-----YDTGQVKVTMEWKLQKEASTRWNPVPGV 507
 
Name Accession Description Interval E-value
Parvo_coat pfam00740
Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these ...
112-582 1.40e-46

Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal region of VP1. VP2 is involved in packaging the viral DNA.


Pssm-ID: 395599  Cd Length: 518  Bit Score: 172.11  E-value: 1.40e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 112 ATGGWVGGTYFGKNKIVTNITRQWYVPIYNGHKY--------------TKQTETDNTNFWNGIRTPWGYINMNSYSCHFS 177
Cdd:pfam00740   5 STGNWHNDTTFMGNRVTCTATRTVHIPTYNNHLYkqfssqsttdtnasGKKANVSNDDHHFGYSTPWGYVDFNAWGVWFS 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 178 PNDWQRLLNNYKRWKPKKMRLQLYNLQIKQVVQL-GTDTLYNNDLTAGVHIMYDGSHQYPYSQSGWDSELIPELPGMIYK 256
Cdd:pfam00740  85 PRDFQRLINNNSGIRPVRLNQEIFNIQVKTVTENdGGGTIANNDLTATLQVAVDSEYILPYVLGAAHQETLPFFPWDVTM 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 257 LPNYCYF--QELGDIGDTGSDLRESWLGTAcpLFFLESSSHEVLRTGEETG-FEFDFDCGWVHNDRAFCPPQCD-FNPLI 332
Cdd:pfam00740 165 PPQYRYLtvNNVNTQGVGGDSVKLASERSQ--FYTLENFPIQLLRTGDNFAtGSYTFEDVPFHSSYAHSQSLDRlMNPLK 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 333 KTRR---SRI-----IMGSSGNTSEPYYDYK-KPSNWMPGPGTRLN--GHQSGNNLKTSSGPFNTSWAppGVTQ----GS 397
Cdd:pfam00740 243 LTYLyylSRLgtpsgTTTQSRLQFSQASDIRdQSRNWLPGPCYRQQtvSKTSADNNNAGAGKAQGSWT--GTTQyglnGE 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 398 DTTYLNSPAM-NRSQWASKSMPTAPANAACSQVDPNSLAFNEPTQLGQQGDTNIRYnniSNDLTRWGTVWSQSQQ----- 471
Cdd:pfam00740 321 DIRVRPGPVGaSYPHWDEKAFPQGGVAIFGPQGSEDTTVGIEKVMITDEQNGSTRY---PYAKEQYGSNSTNLLRglerh 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 472 -VYTSQPTQTRLDTVWQYPMQA--WNGQEVTRYAPIWDKQPNTD-YHTTLSSSDGTLPMKHPPGNIFIKVAKIPIPTETN 547
Cdd:pfam00740 398 tYFPNNGTAQTADLNTPPVLPGmvWNDRDVHFEGQIWDKIPHLDgHFKPSFPLMGGFGLKNPPPQIFVKLTPVPANLTTT 477
                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1464309010 548 TDsylniYCTGQIPIEIEWDAEGYETKNWRPELRI 582
Cdd:pfam00740 478 TQ-----YDTGQVKVTMEWKLQKEASTRWNPVPGV 507
 
Name Accession Description Interval E-value
Parvo_coat pfam00740
Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these ...
112-582 1.40e-46

Parvovirus coat protein VP2; This protein, together with VP1 forms a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal region of VP1. VP2 is involved in packaging the viral DNA.


Pssm-ID: 395599  Cd Length: 518  Bit Score: 172.11  E-value: 1.40e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 112 ATGGWVGGTYFGKNKIVTNITRQWYVPIYNGHKY--------------TKQTETDNTNFWNGIRTPWGYINMNSYSCHFS 177
Cdd:pfam00740   5 STGNWHNDTTFMGNRVTCTATRTVHIPTYNNHLYkqfssqsttdtnasGKKANVSNDDHHFGYSTPWGYVDFNAWGVWFS 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 178 PNDWQRLLNNYKRWKPKKMRLQLYNLQIKQVVQL-GTDTLYNNDLTAGVHIMYDGSHQYPYSQSGWDSELIPELPGMIYK 256
Cdd:pfam00740  85 PRDFQRLINNNSGIRPVRLNQEIFNIQVKTVTENdGGGTIANNDLTATLQVAVDSEYILPYVLGAAHQETLPFFPWDVTM 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 257 LPNYCYF--QELGDIGDTGSDLRESWLGTAcpLFFLESSSHEVLRTGEETG-FEFDFDCGWVHNDRAFCPPQCD-FNPLI 332
Cdd:pfam00740 165 PPQYRYLtvNNVNTQGVGGDSVKLASERSQ--FYTLENFPIQLLRTGDNFAtGSYTFEDVPFHSSYAHSQSLDRlMNPLK 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 333 KTRR---SRI-----IMGSSGNTSEPYYDYK-KPSNWMPGPGTRLN--GHQSGNNLKTSSGPFNTSWAppGVTQ----GS 397
Cdd:pfam00740 243 LTYLyylSRLgtpsgTTTQSRLQFSQASDIRdQSRNWLPGPCYRQQtvSKTSADNNNAGAGKAQGSWT--GTTQyglnGE 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 398 DTTYLNSPAM-NRSQWASKSMPTAPANAACSQVDPNSLAFNEPTQLGQQGDTNIRYnniSNDLTRWGTVWSQSQQ----- 471
Cdd:pfam00740 321 DIRVRPGPVGaSYPHWDEKAFPQGGVAIFGPQGSEDTTVGIEKVMITDEQNGSTRY---PYAKEQYGSNSTNLLRglerh 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464309010 472 -VYTSQPTQTRLDTVWQYPMQA--WNGQEVTRYAPIWDKQPNTD-YHTTLSSSDGTLPMKHPPGNIFIKVAKIPIPTETN 547
Cdd:pfam00740 398 tYFPNNGTAQTADLNTPPVLPGmvWNDRDVHFEGQIWDKIPHLDgHFKPSFPLMGGFGLKNPPPQIFVKLTPVPANLTTT 477
                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1464309010 548 TDsylniYCTGQIPIEIEWDAEGYETKNWRPELRI 582
Cdd:pfam00740 478 TQ-----YDTGQVKVTMEWKLQKEASTRWNPVPGV 507
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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