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Conserved domains on  [gi|1464310899|ref|YP_009508573|]
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bet protein [Western lowland gorilla simian foamy virus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Foamy_BEL super family cl20250
Foamy virus BEL 1/2 protein;
29-280 1.14e-110

Foamy virus BEL 1/2 protein;


The actual alignment was detected with superfamily member pfam03274:

Pssm-ID: 281291  Cd Length: 301  Bit Score: 329.75  E-value: 1.14e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899  29 EAAGEGEDTLSDT-EEVSRRSRKNTKRGAKMITFHAYKEIEDKNPQNLKLHNWIPTPEEMINKKVQNQDLGTILSFGVKH 107
Cdd:pfam03274   1 ENAGEGDLVIAEEpEENPRRPRRYTKRDVKCVSYHAYKELEDKHPHHIKLQDWIPKPEEMVAQKVQNQDVGTILSFDKSC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899 108 LKGITSLGRNDPGRDPSAMSPVLPVVTPWPFSQDHYAPTLYGILLQYYKYSQNNEKIPRVWQFTCLEDPSGKRYMGTRIW 187
Cdd:pfam03274  81 CKRIILCGLNDGEKAPEILKHVLPFTTPWEMSEDHYAPTLFGLLDRYYKGYLENPACFITWKFTCQEDPSGKRYMGTQFW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899 188 VPPLGQVTIQFYKNFVVLTVCQAV--DPWANWFHGSEEEMYDIESEPDVWCSAALCFKVIYEG---------NINQKQEM 256
Cdd:pfam03274 161 VPPLGQVNIQFYKNYQIVICCDALihDPFANIFHGTEEEMYDIDSEPDIWCTPSLCFKVIYEPlrgaigsavFIMEKHEK 240
                         250       260       270
                  ....*....|....*....|....*....|
gi 1464310899 257 KSWL------CRLGHGHKDGVSEFKRVDLF 280
Cdd:pfam03274 241 KCSLvkpstsCPEGPGHRMGADDVLRCDLF 270
 
Name Accession Description Interval E-value
Foamy_BEL pfam03274
Foamy virus BEL 1/2 protein;
29-280 1.14e-110

Foamy virus BEL 1/2 protein;


Pssm-ID: 281291  Cd Length: 301  Bit Score: 329.75  E-value: 1.14e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899  29 EAAGEGEDTLSDT-EEVSRRSRKNTKRGAKMITFHAYKEIEDKNPQNLKLHNWIPTPEEMINKKVQNQDLGTILSFGVKH 107
Cdd:pfam03274   1 ENAGEGDLVIAEEpEENPRRPRRYTKRDVKCVSYHAYKELEDKHPHHIKLQDWIPKPEEMVAQKVQNQDVGTILSFDKSC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899 108 LKGITSLGRNDPGRDPSAMSPVLPVVTPWPFSQDHYAPTLYGILLQYYKYSQNNEKIPRVWQFTCLEDPSGKRYMGTRIW 187
Cdd:pfam03274  81 CKRIILCGLNDGEKAPEILKHVLPFTTPWEMSEDHYAPTLFGLLDRYYKGYLENPACFITWKFTCQEDPSGKRYMGTQFW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899 188 VPPLGQVTIQFYKNFVVLTVCQAV--DPWANWFHGSEEEMYDIESEPDVWCSAALCFKVIYEG---------NINQKQEM 256
Cdd:pfam03274 161 VPPLGQVNIQFYKNYQIVICCDALihDPFANIFHGTEEEMYDIDSEPDIWCTPSLCFKVIYEPlrgaigsavFIMEKHEK 240
                         250       260       270
                  ....*....|....*....|....*....|
gi 1464310899 257 KSWL------CRLGHGHKDGVSEFKRVDLF 280
Cdd:pfam03274 241 KCSLvkpstsCPEGPGHRMGADDVLRCDLF 270
 
Name Accession Description Interval E-value
Foamy_BEL pfam03274
Foamy virus BEL 1/2 protein;
29-280 1.14e-110

Foamy virus BEL 1/2 protein;


Pssm-ID: 281291  Cd Length: 301  Bit Score: 329.75  E-value: 1.14e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899  29 EAAGEGEDTLSDT-EEVSRRSRKNTKRGAKMITFHAYKEIEDKNPQNLKLHNWIPTPEEMINKKVQNQDLGTILSFGVKH 107
Cdd:pfam03274   1 ENAGEGDLVIAEEpEENPRRPRRYTKRDVKCVSYHAYKELEDKHPHHIKLQDWIPKPEEMVAQKVQNQDVGTILSFDKSC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899 108 LKGITSLGRNDPGRDPSAMSPVLPVVTPWPFSQDHYAPTLYGILLQYYKYSQNNEKIPRVWQFTCLEDPSGKRYMGTRIW 187
Cdd:pfam03274  81 CKRIILCGLNDGEKAPEILKHVLPFTTPWEMSEDHYAPTLFGLLDRYYKGYLENPACFITWKFTCQEDPSGKRYMGTQFW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310899 188 VPPLGQVTIQFYKNFVVLTVCQAV--DPWANWFHGSEEEMYDIESEPDVWCSAALCFKVIYEG---------NINQKQEM 256
Cdd:pfam03274 161 VPPLGQVNIQFYKNYQIVICCDALihDPFANIFHGTEEEMYDIDSEPDIWCTPSLCFKVIYEPlrgaigsavFIMEKHEK 240
                         250       260       270
                  ....*....|....*....|....*....|
gi 1464310899 257 KSWL------CRLGHGHKDGVSEFKRVDLF 280
Cdd:pfam03274 241 KCSLvkpstsCPEGPGHRMGADDVLRCDLF 270
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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