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Conserved domains on  [gi|1571847455|ref|YP_009553536|]
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ORF1 protein [Cacao swollen shoot Ghana J virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1319 super family cl06184
Protein of unknown function (DUF1319); This family contains a number of viral proteins of ...
 22-130 2.71e-25

Protein of unknown function (DUF1319); This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.


The actual alignment was detected with superfamily member pfam07028:

Pssm-ID: 369174  Cd Length: 109  Bit Score: 92.66  E-value: 2.71e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847455  22 EYLDLASSSKVSNNQLAHNLAVIFDRVSLGNRVIIKNLKQLHESVLELGRQVEVIESSLKRVNKHLRENKPLTEETVKKL 101
Cdd:pfam07028   1 DYLVLAETVKPTRRELAHNIHVIYDRTCLGSRVNLQNFKIVKEQNRSLEDQIKKLKSSLKTLRELYLENRPLTKQEVEEL 80

                          90       100
                  ....*....|....*....|....*....
gi 1571847455 102 VQEITQQPKIVEEQALKLTQELEAKLAKV 130
Cdd:pfam07028  81 VVEISKQPKFIEEEALALTQELKQKLQRV 109
 
Name Accession Description Interval E-value
DUF1319 pfam07028
Protein of unknown function (DUF1319); This family contains a number of viral proteins of ...
 22-130 2.71e-25

Protein of unknown function (DUF1319); This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.


Pssm-ID: 369174  Cd Length: 109  Bit Score: 92.66  E-value: 2.71e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847455  22 EYLDLASSSKVSNNQLAHNLAVIFDRVSLGNRVIIKNLKQLHESVLELGRQVEVIESSLKRVNKHLRENKPLTEETVKKL 101
Cdd:pfam07028   1 DYLVLAETVKPTRRELAHNIHVIYDRTCLGSRVNLQNFKIVKEQNRSLEDQIKKLKSSLKTLRELYLENRPLTKQEVEEL 80

                          90       100
                  ....*....|....*....|....*....
gi 1571847455 102 VQEITQQPKIVEEQALKLTQELEAKLAKV 130
Cdd:pfam07028  81 VVEISKQPKFIEEEALALTQELKQKLQRV 109
 
Name Accession Description Interval E-value
DUF1319 pfam07028
Protein of unknown function (DUF1319); This family contains a number of viral proteins of ...
 22-130 2.71e-25

Protein of unknown function (DUF1319); This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.


Pssm-ID: 369174  Cd Length: 109  Bit Score: 92.66  E-value: 2.71e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571847455  22 EYLDLASSSKVSNNQLAHNLAVIFDRVSLGNRVIIKNLKQLHESVLELGRQVEVIESSLKRVNKHLRENKPLTEETVKKL 101
Cdd:pfam07028   1 DYLVLAETVKPTRRELAHNIHVIYDRTCLGSRVNLQNFKIVKEQNRSLEDQIKKLKSSLKTLRELYLENRPLTKQEVEEL 80

                          90       100
                  ....*....|....*....|....*....
gi 1571847455 102 VQEITQQPKIVEEQALKLTQELEAKLAKV 130
Cdd:pfam07028  81 VVEISKQPKFIEEEALALTQELKQKLQRV 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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