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Conserved domains on  [gi|1593549714|ref|YP_009561236|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Geochelone elegans]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009571)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 7.00e-58

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 174.30  E-value: 7.00e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   2 NMMISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1593549714  82 LPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWA 115
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 7.00e-58

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 174.30  E-value: 7.00e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   2 NMMISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1593549714  82 LPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWA 115
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 2.39e-34

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 114.06  E-value: 2.39e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  19 MALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PTHSLTCASIILF 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRElGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1593549714  98 LLTLGFTYEWTQGGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-114 8.99e-30

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 102.89  E-value: 8.99e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  10 ISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PTHS 88
Cdd:COG0838    14 VALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElGWFG 91

                          90       100
                  ....*....|....*....|....*.
gi 1593549714  89 LTCASIILFLLTLGFTYEWTQGGLEW 114
Cdd:COG0838    92 LIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 7.00e-58

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 174.30  E-value: 7.00e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   2 NMMISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1593549714  82 LPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWA 115
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.99e-57

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 173.18  E-value: 1.99e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   1 MNMMISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1593549714  81 QLPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 1.74e-53

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 163.24  E-value: 1.74e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   3 MMISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQL 82
Cdd:MTH00069    1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1593549714  83 PHPTHSLTCASIILFLLTLGFTYEWTQGGLEWAE 116
Cdd:MTH00069   81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 3.89e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 144.70  E-value: 3.89e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   1 MNMMIsTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00106    1 MNLML-TLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1593549714  81 QLPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWAE 116
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 3.96e-43

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 137.04  E-value: 3.96e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   1 MNMMISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1593549714  81 QLPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 1.96e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 125.01  E-value: 1.96e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   1 MNMMISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1593549714  81 QLphPTHSLTCASIILFLLTLGFTYEWTQGGLEW 114
Cdd:MTH00203   81 QL--SSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 2.39e-34

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 114.06  E-value: 2.39e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  19 MALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PTHSLTCASIILF 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRElGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1593549714  98 LLTLGFTYEWTQGGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 2.79e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 106.78  E-value: 2.79e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   3 MMISTMTISLAMSSTLMALNYWLTP-TKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKkSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1593549714  82 LPHPTHSLTCASIILFLLTLGFTYEWTQGGLEW 114
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 7.65e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 103.40  E-value: 7.65e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   1 MNMMISTMTISLAMSSTLMALNYWLTP-TKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKrSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1593549714  80 IQLPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWAE 116
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-114 8.99e-30

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 102.89  E-value: 8.99e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  10 ISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PTHS 88
Cdd:COG0838    14 VALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElGWFG 91

                          90       100
                  ....*....|....*....|....*.
gi 1593549714  89 LTCASIILFLLTLGFTYEWTQGGLEW 114
Cdd:COG0838    92 LIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 3-116 9.56e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 98.14  E-value: 9.56e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   3 MMISTMTISLAMSSTLMALNYWLTPTKSNN--EKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00202    2 LLILFMSILSILISSLLFLVSWMLSFRSLMdrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVL 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1593549714  81 QLPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWAE 116
Cdd:MTH00202   82 KSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 10-115 1.07e-27

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 98.01  E-value: 1.07e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  10 ISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPHPTH-S 88
Cdd:PRK06602   17 VAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGWlG 94

                          90       100
                  ....*....|....*....|....*..
gi 1593549714  89 LTCASIILFLLTLGFTYEWTQGGLEWA 115
Cdd:PRK06602   95 FVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 5.64e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 93.38  E-value: 5.64e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   1 MNMMISTMTISLAMSSTLMALNYWLTPTKSNN-EKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1593549714  80 IQLPHPTHSLTCASIILFLLTLGFTYEWTQGGLEWA 115
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 10-114 8.35e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 93.24  E-value: 8.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  10 ISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLpHPTHSL 89
Cdd:MTH00055   14 FSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVY-NQIGLF 90

                          90       100
                  ....*....|....*....|....*..
gi 1593549714  90 TCASIILFL--LTLGFTYEWTQGGLEW 114
Cdd:MTH00055   91 GFWVMYLFLiiLTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 10-114 6.04e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 85.50  E-value: 6.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  10 ISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PTHS 88
Cdd:MTH00018    9 FSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQiAPFG 86

                          90       100
                  ....*....|....*....|....*.
gi 1593549714  89 LTCASIILFLLTLGFTYEWTQGGLEW 114
Cdd:MTH00018   87 FWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 4-114 4.51e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 73.43  E-value: 4.51e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   4 MISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLP 83
Cdd:MTH00030   13 LLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFN 90

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1593549714  84 HPT-HSLTCASIILFLLTLGFTYEWTQGGLEW 114
Cdd:MTH00030   91 QLNlFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-114 4.70e-16

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 68.16  E-value: 4.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  19 MALNYWLTPTKSNNEKLSPYECGFDPLESARLP--FSIRFFLVAILFLLFDLEIALLLPlpWAIQLPH-PTHSLtcASII 95
Cdd:PRK07928   22 VVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDAlGVFGL--VEMA 97

                          90       100
                  ....*....|....*....|.
gi 1593549714  96 LFLLT--LGFTYEWTQGGLEW 114
Cdd:PRK07928   98 LFMLTvfVAYAYVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 24-114 2.42e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 58.85  E-value: 2.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  24 WLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPHPTHSLTC-ASIILFLLTLG 102
Cdd:CHL00022   30 LLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVSAFIeALIFVLILIVG 107

                          90
                  ....*....|..
gi 1593549714 103 FTYEWTQGGLEW 114
Cdd:CHL00022  108 LVYAWRKGALEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
34-114 6.15e-11

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 55.44  E-value: 6.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  34 KLSPYECGFDPLESARlPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLpHPTHSLTCASIILF--LLTLGFTYEWTQGG 111
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDF-KLLGLFGLIEMLLFivLLTIGFIYAWKKGA 122


                  ...
gi 1593549714 112 LEW 114
Cdd:PRK08489  123 LEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
24-114 1.35e-10

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 54.36  E-value: 1.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  24 WLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPlpWAIQLPH-PTHSLTCASIILFLLTLG 102
Cdd:PRK07756   32 MLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKlGLFALIEMLIFVVMLLVG 109

                          90
                  ....*....|..
gi 1593549714 103 FTYEWTQGGLEW 114
Cdd:PRK07756  110 LAYAWKKKVLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 4.71e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 49.89  E-value: 4.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714   1 MNMMISTMTISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLpwai 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---- 76

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1593549714  81 qLPHPTHSLTCASIILFLLTLGFTYEWTQGGLEW 114
Cdd:MTH00092   77 -LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 28-114 1.27e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 46.43  E-value: 1.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593549714  28 TKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLphpTHSLTCASIILFLLTLGFTYEW 107
Cdd:MTH00060   31 YSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLL---FYNFWYYYFFLLLLFLGFVVEL 107


                  ....*..
gi 1593549714 108 TQGGLEW 114
Cdd:MTH00060  108 FSGYVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 9-80 7.25e-06

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 42.11  E-value: 7.25e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1593549714   9 TISLAMSSTLMALNYWLTPTKSNNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 80
Cdd:PRK06432   38 RISLKTEDILKKAAYEDTPPGSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLL--FPWAF 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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