NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1631920631|ref|YP_009598512|]
View 

single strand DNA binding protein [Rhizobium phage RHEph04]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF669 super family cl04900
Protein of unknown function (DUF669); Members of this family are found in various phage ...
4-126 9.16e-11

Protein of unknown function (DUF669); Members of this family are found in various phage proteins.


The actual alignment was detected with superfamily member pfam05037:

Pssm-ID: 398629  Cd Length: 126  Bit Score: 57.45  E-value: 9.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631920631   4 INFNASTVKpnvALEAIPSGLYPVIITKTEEKPTKSGQGSYIEVEMTVQGGEFANRKI-FDRLNIRNPNQTAVDIAYATL 82
Cdd:pfam05037   1 FTFDSNNVE---GFEALPPGEYEVTIVSAEAKTTKTSGNEMLVLDYEILDGKHKGRKIlYDNLVVSKDNVKKLEQSQYRF 77
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1631920631  83 SAICHVTGVLNMTD-------TVQLHGRPFQAVVSKipRDDRPDQMTNEVK 126
Cdd:pfam05037  78 NSFSVALGVPEGTQfdsisqfAKALLNKPLLVYVGL--EVDNNGKKYPEVK 126
 
Name Accession Description Interval E-value
DUF669 pfam05037
Protein of unknown function (DUF669); Members of this family are found in various phage ...
4-126 9.16e-11

Protein of unknown function (DUF669); Members of this family are found in various phage proteins.


Pssm-ID: 398629  Cd Length: 126  Bit Score: 57.45  E-value: 9.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631920631   4 INFNASTVKpnvALEAIPSGLYPVIITKTEEKPTKSGQGSYIEVEMTVQGGEFANRKI-FDRLNIRNPNQTAVDIAYATL 82
Cdd:pfam05037   1 FTFDSNNVE---GFEALPPGEYEVTIVSAEAKTTKTSGNEMLVLDYEILDGKHKGRKIlYDNLVVSKDNVKKLEQSQYRF 77
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1631920631  83 SAICHVTGVLNMTD-------TVQLHGRPFQAVVSKipRDDRPDQMTNEVK 126
Cdd:pfam05037  78 NSFSVALGVPEGTQfdsisqfAKALLNKPLLVYVGL--EVDNNGKKYPEVK 126
 
Name Accession Description Interval E-value
DUF669 pfam05037
Protein of unknown function (DUF669); Members of this family are found in various phage ...
4-126 9.16e-11

Protein of unknown function (DUF669); Members of this family are found in various phage proteins.


Pssm-ID: 398629  Cd Length: 126  Bit Score: 57.45  E-value: 9.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631920631   4 INFNASTVKpnvALEAIPSGLYPVIITKTEEKPTKSGQGSYIEVEMTVQGGEFANRKI-FDRLNIRNPNQTAVDIAYATL 82
Cdd:pfam05037   1 FTFDSNNVE---GFEALPPGEYEVTIVSAEAKTTKTSGNEMLVLDYEILDGKHKGRKIlYDNLVVSKDNVKKLEQSQYRF 77
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1631920631  83 SAICHVTGVLNMTD-------TVQLHGRPFQAVVSKipRDDRPDQMTNEVK 126
Cdd:pfam05037  78 NSFSVALGVPEGTQfdsisqfAKALLNKPLLVYVGL--EVDNNGKKYPEVK 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH