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Conserved domains on  [gi|1631925919|ref|YP_009603746|]
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DNA primase [Propionibacterium phage PHL117M01]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CHC2 super family cl21601
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 36-76 3.44e-10

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


The actual alignment was detected with superfamily member smart00400:

Pssm-ID: 451328 [Multi-domain]  Cd Length: 55  Bit Score: 51.91  E-value: 3.44e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1631925919   36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGGGLAKLQQRLEE 76
Cdd:smart00400   4 LCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDK 44
 
Name Accession Description Interval E-value
ZnF_CHCC smart00400
zinc finger;
36-76 3.44e-10

zinc finger;


Pssm-ID: 128681 [Multi-domain]  Cd Length: 55  Bit Score: 51.91  E-value: 3.44e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1631925919   36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGGGLAKLQQRLEE 76
Cdd:smart00400   4 LCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDK 44
dnaG TIGR01391
DNA primase, catalytic core; Members of this family are DNA primase, a ubiquitous bacteria ...
 36-75 2.68e-09

DNA primase, catalytic core; Members of this family are DNA primase, a ubiquitous bacteria protein. Most members of this family contain nearly two hundred additional residues C-terminal to the region represented here, but conservation between species is poor and the C-terminal region was not included in the seed alignment. This protein contains a CHC2 zinc finger (pfam01807) and a Toprim domain (pfam01751). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273595 [Multi-domain]  Cd Length: 415  Bit Score: 53.76  E-value: 2.68e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1631925919  36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGGGLAKLQQRLE 75
Cdd:TIGR01391  36 LCPFHHEKTPSFSVSPEKQFYHCFGCGAGGDAIKFLMEIE 75
zf-CHC2 pfam01807
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 36-65 3.34e-09

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


Pssm-ID: 426447 [Multi-domain]  Cd Length: 95  Bit Score: 50.33  E-value: 3.34e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1631925919  36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGG 65
Cdd:pfam01807  34 LCPFHHEKTPSFTVSPDKQFYHCFGCGAGG 63
DnaG COG0358
DNA primase (bacterial type) [Replication, recombination and repair];
36-65 9.14e-09

DNA primase (bacterial type) [Replication, recombination and repair];


Pssm-ID: 440127 [Multi-domain]  Cd Length: 465  Bit Score: 52.06  E-value: 9.14e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1631925919  36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGG 65
Cdd:COG0358    36 LCPFHDEKTPSFTVSPEKQFYHCFGCGAGG 65
 
Name Accession Description Interval E-value
ZnF_CHCC smart00400
zinc finger;
36-76 3.44e-10

zinc finger;


Pssm-ID: 128681 [Multi-domain]  Cd Length: 55  Bit Score: 51.91  E-value: 3.44e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1631925919   36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGGGLAKLQQRLEE 76
Cdd:smart00400   4 LCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDK 44
dnaG TIGR01391
DNA primase, catalytic core; Members of this family are DNA primase, a ubiquitous bacteria ...
 36-75 2.68e-09

DNA primase, catalytic core; Members of this family are DNA primase, a ubiquitous bacteria protein. Most members of this family contain nearly two hundred additional residues C-terminal to the region represented here, but conservation between species is poor and the C-terminal region was not included in the seed alignment. This protein contains a CHC2 zinc finger (pfam01807) and a Toprim domain (pfam01751). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273595 [Multi-domain]  Cd Length: 415  Bit Score: 53.76  E-value: 2.68e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1631925919  36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGGGLAKLQQRLE 75
Cdd:TIGR01391  36 LCPFHHEKTPSFSVSPEKQFYHCFGCGAGGDAIKFLMEIE 75
zf-CHC2 pfam01807
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 36-65 3.34e-09

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


Pssm-ID: 426447 [Multi-domain]  Cd Length: 95  Bit Score: 50.33  E-value: 3.34e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1631925919  36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGG 65
Cdd:pfam01807  34 LCPFHHEKTPSFTVSPDKQFYHCFGCGAGG 63
DnaG COG0358
DNA primase (bacterial type) [Replication, recombination and repair];
36-65 9.14e-09

DNA primase (bacterial type) [Replication, recombination and repair];


Pssm-ID: 440127 [Multi-domain]  Cd Length: 465  Bit Score: 52.06  E-value: 9.14e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1631925919  36 LCPFHDDHQPSMSINLTKGVWYCHTCGVGG 65
Cdd:COG0358    36 LCPFHDEKTPSFTVSPEKQFYHCFGCGAGG 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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