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Conserved domains on  [gi|1631928613|ref|YP_009606420|]
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thymidylate kinase [Erwinia phage vB_EamM_Special G]

Protein Classification

dTMP kinase( domain architecture ID 11414784)

dTMP (thymidylate) kinase catalyzes the reversible phosphorylation of deoxythymidine monophosphate (dTMP) to deoxythymidine diphosphate (dTDP) using ATP as a phosphoryl donor

CATH:  3.40.50.300
EC:  2.7.4.9
PubMed:  23394555

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
28-240 1.78e-32

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


:

Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 117.57  E-value: 1.78e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  28 EGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTREMGGTAQGRVFREMVLfpKETQELDLQTETLLCWADRVEGQKQV-KAW 106
Cdd:COG0125     9 EGIDGSGKSTQIKLLAEYLEAR--GYDVVLTREPGGTPLGEAIRELLL--GDNEDMSPRTELLLFAADRAQHVEEViRPA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613 107 LNAGIAVVQDRTYFSTYAYQGMLYGQSP-LVSKIHSG-LDIMNADIVFVLDVDPEDILARVGRREAKgnedptgNDRMDV 184
Cdd:COG0125    85 LAAGKIVICDRYVDSSLAYQGGGRGLDLeWIRQLNRFaTGGLKPDLTILLDVPPEVALARARARGGE-------LDRFES 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1631928613 185 MTDRQLKDLCYFYRGIEHQMPAcanikqsKVIHLDGRQTQEQLLQDAIVHLTRFLD 240
Cdd:COG0125   158 EDLEFHERVREGYLELAAKEPE-------RIVVIDASQSIEEVHAEIREALAELLK 206
 
Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
28-240 1.78e-32

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 117.57  E-value: 1.78e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  28 EGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTREMGGTAQGRVFREMVLfpKETQELDLQTETLLCWADRVEGQKQV-KAW 106
Cdd:COG0125     9 EGIDGSGKSTQIKLLAEYLEAR--GYDVVLTREPGGTPLGEAIRELLL--GDNEDMSPRTELLLFAADRAQHVEEViRPA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613 107 LNAGIAVVQDRTYFSTYAYQGMLYGQSP-LVSKIHSG-LDIMNADIVFVLDVDPEDILARVGRREAKgnedptgNDRMDV 184
Cdd:COG0125    85 LAAGKIVICDRYVDSSLAYQGGGRGLDLeWIRQLNRFaTGGLKPDLTILLDVPPEVALARARARGGE-------LDRFES 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1631928613 185 MTDRQLKDLCYFYRGIEHQMPAcanikqsKVIHLDGRQTQEQLLQDAIVHLTRFLD 240
Cdd:COG0125   158 EDLEFHERVREGYLELAAKEPE-------RIVVIDASQSIEEVHAEIREALAELLK 206
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
28-236 2.04e-30

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 111.98  E-value: 2.04e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  28 EGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTREMGGTAQGRVFREMVLFPkETQELDLQTETLLCWADRVEGQKQV-KAW 106
Cdd:cd01672     6 EGIDGAGKTTLIELLAERLEAR--GYEVVLTREPGGTPIGEAIRELLLDP-EDEKMDPRAELLLFAADRAQHVEEViKPA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613 107 LNAGIAVVQDRTYFSTYAYQGMLYGQSP-LVSKIHS-GLDIMNADIVFVLDVDPEDILARVGRReakGNEDPtgndrmdv 184
Cdd:cd01672    83 LARGKIVLSDRFVDSSLAYQGAGRGLGEaLIEALNDlATGGLKPDLTILLDIDPEVGLARIEAR---GRDDR-------- 151
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1631928613 185 mtdRQLKDLCYFYRgiEHQMP-ACANIKQSKVIHLDGRQTQEQLLQDAIVHLT 236
Cdd:cd01672   152 ---DEQEGLEFHER--VREGYlELAAQEPERIIVIDASQPLEEVLAEILKAIL 199
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
21-230 2.14e-25

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 98.97  E-value: 2.14e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  21 RGLYVKAEGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTREMGGTAQGRVFREMVLFPKETqELDLQTETLLCWADRVEGQ 100
Cdd:TIGR00041   2 RGMFIVIEGIDGAGKTTQANLLKKLLQEN--GYDVLFTREPGGTPIGEKIRELLLNENDE-PLTDKAEALLFAADRHEHL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613 101 KQ-VKAWLNAGIAVVQDRTYFSTYAYQGMLYGQSP-LVSKIHSGLDIMNADIVFVLDVDPEDILARVGrreAKGNEDPTg 178
Cdd:TIGR00041  79 EDkIKPALAEGKLVISDRYVFSSIAYQGGARGIDEdLVLELNEDALGDMPDLTIYLDIDPEVALERLR---KRGELDRE- 154
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1631928613 179 nDRMDVMTDRQLKDlcYFYRGIEhqmpacaniKQSKVIHLDGRQTQEQLLQD 230
Cdd:TIGR00041 155 -EFEKLDFFEKVRQ--RYLELAD---------KEKSIHVIDATNSVEEVEQD 194
Thymidylate_kin pfam02223
Thymidylate kinase;
28-169 5.85e-24

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 94.68  E-value: 5.85e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  28 EGPDGSGKSTFVKLLTEWLQTQLgnSRAVMTREMGGTAQGRVFREMVLfpkETQELDLQTETLLCWADRVEGQKQV-KAW 106
Cdd:pfam02223   2 EGLDGAGKTTQAELLKERLKEQG--IKVVFTREPGGTPIGEKIRELLL---RNEELSPLTEALLFAADRIQHLEQKiKPA 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1631928613 107 LNAGIAVVQDRTYFSTYAYQGMLYGQSPLVSKIHSGLDIMnADIVFVLDVDPEDILARVGRRE 169
Cdd:pfam02223  77 LKQGKTVIVDRYLFSGIAYQGAKGGDLDLVLSLNPDVPGK-PDLTFLLDVDPEVALKRLRRRG 138
PLN02924 PLN02924
thymidylate kinase
17-166 1.54e-05

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 44.71  E-value: 1.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  17 SNSHRGLYVKAEGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTR-EMGGTAQGRVFREmvlFPKETQELDLQTETLLCWAD 95
Cdd:PLN02924   11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGL--GVAAELWRfPDRTTSVGQMISA---YLSNKSQLDDRAIHLLFSAN 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  96 RVEGQKQVKAWLNAGIAVVQDRtyfstYAYQGMLYGQSplvskihSGLDI----------MNADIVFVLDVDPEDILARV 165
Cdd:PLN02924   86 RWEKRSLMERKLKSGTTLVVDR-----YSYSGVAFSAA-------KGLDLewckapevglPAPDLVLYLDISPEEAAERG 153

                  .
gi 1631928613 166 G 166
Cdd:PLN02924  154 G 154
 
Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
28-240 1.78e-32

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 117.57  E-value: 1.78e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  28 EGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTREMGGTAQGRVFREMVLfpKETQELDLQTETLLCWADRVEGQKQV-KAW 106
Cdd:COG0125     9 EGIDGSGKSTQIKLLAEYLEAR--GYDVVLTREPGGTPLGEAIRELLL--GDNEDMSPRTELLLFAADRAQHVEEViRPA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613 107 LNAGIAVVQDRTYFSTYAYQGMLYGQSP-LVSKIHSG-LDIMNADIVFVLDVDPEDILARVGRREAKgnedptgNDRMDV 184
Cdd:COG0125    85 LAAGKIVICDRYVDSSLAYQGGGRGLDLeWIRQLNRFaTGGLKPDLTILLDVPPEVALARARARGGE-------LDRFES 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1631928613 185 MTDRQLKDLCYFYRGIEHQMPAcanikqsKVIHLDGRQTQEQLLQDAIVHLTRFLD 240
Cdd:COG0125   158 EDLEFHERVREGYLELAAKEPE-------RIVVIDASQSIEEVHAEIREALAELLK 206
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
28-236 2.04e-30

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 111.98  E-value: 2.04e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  28 EGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTREMGGTAQGRVFREMVLFPkETQELDLQTETLLCWADRVEGQKQV-KAW 106
Cdd:cd01672     6 EGIDGAGKTTLIELLAERLEAR--GYEVVLTREPGGTPIGEAIRELLLDP-EDEKMDPRAELLLFAADRAQHVEEViKPA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613 107 LNAGIAVVQDRTYFSTYAYQGMLYGQSP-LVSKIHS-GLDIMNADIVFVLDVDPEDILARVGRReakGNEDPtgndrmdv 184
Cdd:cd01672    83 LARGKIVLSDRFVDSSLAYQGAGRGLGEaLIEALNDlATGGLKPDLTILLDIDPEVGLARIEAR---GRDDR-------- 151
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1631928613 185 mtdRQLKDLCYFYRgiEHQMP-ACANIKQSKVIHLDGRQTQEQLLQDAIVHLT 236
Cdd:cd01672   152 ---DEQEGLEFHER--VREGYlELAAQEPERIIVIDASQPLEEVLAEILKAIL 199
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
21-230 2.14e-25

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 98.97  E-value: 2.14e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  21 RGLYVKAEGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTREMGGTAQGRVFREMVLFPKETqELDLQTETLLCWADRVEGQ 100
Cdd:TIGR00041   2 RGMFIVIEGIDGAGKTTQANLLKKLLQEN--GYDVLFTREPGGTPIGEKIRELLLNENDE-PLTDKAEALLFAADRHEHL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613 101 KQ-VKAWLNAGIAVVQDRTYFSTYAYQGMLYGQSP-LVSKIHSGLDIMNADIVFVLDVDPEDILARVGrreAKGNEDPTg 178
Cdd:TIGR00041  79 EDkIKPALAEGKLVISDRYVFSSIAYQGGARGIDEdLVLELNEDALGDMPDLTIYLDIDPEVALERLR---KRGELDRE- 154
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1631928613 179 nDRMDVMTDRQLKDlcYFYRGIEhqmpacaniKQSKVIHLDGRQTQEQLLQD 230
Cdd:TIGR00041 155 -EFEKLDFFEKVRQ--RYLELAD---------KEKSIHVIDATNSVEEVEQD 194
Thymidylate_kin pfam02223
Thymidylate kinase;
28-169 5.85e-24

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 94.68  E-value: 5.85e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  28 EGPDGSGKSTFVKLLTEWLQTQLgnSRAVMTREMGGTAQGRVFREMVLfpkETQELDLQTETLLCWADRVEGQKQV-KAW 106
Cdd:pfam02223   2 EGLDGAGKTTQAELLKERLKEQG--IKVVFTREPGGTPIGEKIRELLL---RNEELSPLTEALLFAADRIQHLEQKiKPA 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1631928613 107 LNAGIAVVQDRTYFSTYAYQGMLYGQSPLVSKIHSGLDIMnADIVFVLDVDPEDILARVGRRE 169
Cdd:pfam02223  77 LKQGKTVIVDRYLFSGIAYQGAKGGDLDLVLSLNPDVPGK-PDLTFLLDVDPEVALKRLRRRG 138
PLN02924 PLN02924
thymidylate kinase
17-166 1.54e-05

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 44.71  E-value: 1.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  17 SNSHRGLYVKAEGPDGSGKSTFVKLLTEWLQTQlgNSRAVMTR-EMGGTAQGRVFREmvlFPKETQELDLQTETLLCWAD 95
Cdd:PLN02924   11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGL--GVAAELWRfPDRTTSVGQMISA---YLSNKSQLDDRAIHLLFSAN 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  96 RVEGQKQVKAWLNAGIAVVQDRtyfstYAYQGMLYGQSplvskihSGLDI----------MNADIVFVLDVDPEDILARV 165
Cdd:PLN02924   86 RWEKRSLMERKLKSGTTLVVDR-----YSYSGVAFSAA-------KGLDLewckapevglPAPDLVLYLDISPEEAAERG 153

                  .
gi 1631928613 166 G 166
Cdd:PLN02924  154 G 154
dNK pfam01712
Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2. ...
28-168 2.04e-03

Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyze the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside. Using ATP and yielding ADP in the process.


Pssm-ID: 396326  Cd Length: 201  Bit Score: 38.07  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  28 EGPDGSGKSTFVKLLTEWLQTQlgnsravmtremggtaqgrVFREMV---------LFPKETQE--LDLQTETLLCwadR 96
Cdd:pfam01712   4 EGNIGAGKSTLTKILSKRLGFK-------------------VFEEPVdrwtnpyldKFYKDPSRwsFALQTYFLNS---R 61
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631928613  97 VegqKQVKAWLNAGIAVVQDRT-YFSTYAYQGMLYGQ---SPLVSKIHSGL-DIMNADI----VFV-LDVDPEDILARVG 166
Cdd:pfam01712  62 F---KQQLEAFFTGQVVILERSiYSDRYIFAKMLYDKgtmSDEEYKTYKDLyDNMLLEFpkpdLIIyLKTSPETCLERIK 138

                  ..
gi 1631928613 167 RR 168
Cdd:pfam01712 139 KR 140
PRK13768 PRK13768
GTPase; Provisional
29-49 4.05e-03

GTPase; Provisional


Pssm-ID: 237498 [Multi-domain]  Cd Length: 253  Bit Score: 37.54  E-value: 4.05e-03
                          10        20
                  ....*....|....*....|.
gi 1631928613  29 GPDGSGKSTFVKLLTEWLQTQ 49
Cdd:PRK13768    9 GTAGSGKTTLTKALSDWLEEQ 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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