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Conserved domains on  [gi|1824665767|ref|YP_009740636|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Bryodemella holdereri holdereri]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-444 4.70e-160

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 459.23  E-value: 4.70e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENCWWLVHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  81 LFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 161 INNIFNTLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 241 LGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 321 IYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1824665767 401 YSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSEYFYF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-444 4.70e-160

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 459.23  E-value: 4.70e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENCWWLVHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  81 LFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 161 INNIFNTLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 241 LGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 321 IYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1824665767 401 YSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSEYFYF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-379 5.54e-54

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 181.74  E-value: 5.54e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLF------DCGSFYFMFYVF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltggLNSSGLLLLFLL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPTMSF 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1824665767 346 WWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPY 379
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWI 281
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
8-399 2.10e-52

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 182.97  E-value: 2.10e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   8 LCFLIPIGLLENCWWL---VHSLMFLLSfIFMFSVYSYSDLNM-------------IGYFFGIDYFSFMLILLSFWIVSL 71
Cdd:COG1008    19 LLLLLPRRNARLARWValaVSLLTLLLS-LYLLAGFDPGTGGFqfvesypwipslgISYHLGVDGISLPLVLLTALLTPL 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  72 MITASSSVYlfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVAS 151
Cdd:COG1008    98 AILASWNEI--KKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGS 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 152 LPLL---LVLFKINNIFNTLYFPLLFDCGSFYFMFYVFILF--AFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKL 226
Cdd:COG1008   175 LLMLvaiLALYFLAGALTFDIAELAAAPLPLTAQLLLFLAFfiAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKM 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 227 GGYGIFRVMkiisfLGL------SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGS 300
Cdd:COG1008   255 GGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGA 329
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 301 LSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYM 380
Cdd:COG1008   330 VLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWL 409
                         410
                  ....*....|....*....
gi 1824665767 381 FLLLIFLSFFSAVYTLYMY 399
Cdd:COG1008   410 AILAALGLILTAAYLLWMY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
48-399 1.05e-42

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 156.64  E-value: 1.05e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  48 IGYFFGIDYFSFMLILLSFWIVSLMITASSsvYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 128 LGWGyQPERLQAGIYLIFYTLVASLPLLLVL----FKINNIFN-TLYFPLLFDCGSFYFMFYVFiLFAFLVSMPMFLFHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLAIlglyFLGGGTFDlLELLNLPLPFGVQTWLFLAF-FIAFAVKVPLFPLHT 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 203 WLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 282 MSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSL 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1824665767 362 NLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 385 GFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-444 4.70e-160

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 459.23  E-value: 4.70e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENCWWLVHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  81 LFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 161 INNIFNTLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 241 LGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 321 IYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1824665767 401 YSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSEYFYF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
31-442 6.33e-113

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 337.97  E-value: 6.33e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  31 LSFIFMFSvySYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLL 110
Cdd:MTH00150    1 LSLLLLYS--SFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 111 SFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCGSFYFM---FYVFI 187
Cdd:MTH00150   79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSmglWGLLV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 188 LFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQ 267
Cdd:MTH00150  159 FLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQ 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 268 VDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWW 347
Cdd:MTH00150  239 SDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWW 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 348 FLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFL 427
Cdd:MTH00150  319 FLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLL 398
                         410
                  ....*....|....*
gi 1824665767 428 HWFPLNILCLKSEYF 442
Cdd:MTH00150  399 HWVPLLLLILKSDLL 413
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-440 2.11e-112

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 337.87  E-value: 2.11e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENCWWLVHS---LMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASS 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  78 SVYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 158 LFKI---NNIFNTLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIfytNNSLSMLMSSMEPPSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 235 MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 315 FCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1824665767 395 TLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-440 2.71e-109

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 330.23  E-value: 2.71e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENC---WWLVHSLMFLLSFI-FMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITAS 76
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLSKPkflWTNTTTYSLLIALLsLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  77 SSVYLFSYHSN--FFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPL 154
Cdd:MTH00124   81 QNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 155 LLVLFKINNIFNTLYFPLLFDCGSF------YFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00124  161 LIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 229 YGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHG 308
Cdd:MTH00124  241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 309 LCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLS 388
Cdd:MTH00124  321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1824665767 389 FFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00124  401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPE 452
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
2-444 2.82e-107

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 324.63  E-value: 2.82e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   2 LKYLLMLCFLIPIGLLENCWW--LVHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSV 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWsfFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  80 YLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 160 KINNIFNTLYFPLLFDCGSFYFMFYVFILF---AFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIFlmlAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 237 IISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 317 LSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1824665767 397 YMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSEYFYF 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-440 3.10e-103

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 314.55  E-value: 3.10e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENCWWLVHSLMFLLSFIFMFSV----YSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITAS 76
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLmwfnLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  77 SSVYLFS--YHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPL 154
Cdd:MTH00068   81 QNHLKNEpiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 155 LLVLFKINNIFNTLYFPLLFDCGSFYFM------FYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGG 228
Cdd:MTH00068  161 LIALLILQNSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 229 YGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHG 308
Cdd:MTH00068  241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 309 LCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLS 388
Cdd:MTH00068  321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1824665767 389 FFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00068  401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPE 452
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
5-432 1.90e-96

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 297.27  E-value: 1.90e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   5 LLMLCFLIPIGLLENCWWLVHSLMFLLSfIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVYLFSY 84
Cdd:MTH00044   11 IAITSWIVPKNKLWPISISQSSLISLLS-LFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASINHLSNNS 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  85 HSN--FFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKIN 162
Cdd:MTH00044   90 PNNqrTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIY 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 163 NIFNTLYFPLLFDC------GSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00044  170 SSSSSLSIPLSELNwltslsSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLIN 249
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 237 IISFLGLSF-NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:MTH00044  250 LFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALF 329
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 316 CLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYT 395
Cdd:MTH00044  330 CLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYS 409
                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 1824665767 396 LYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPL 432
Cdd:MTH00044  410 LLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-437 3.33e-95

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 294.11  E-value: 3.33e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENCWWL-----VHSLMFLLSFIFMFSVYSYSDLNMIGYFFgIDYFSFMLILLSFWIVSLMITA 75
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNFSLLFF-SDSLSTPLLILTTWLLPLMLMA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  76 SSSvYLFS---YHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASL 152
Cdd:MTH00110   80 SQH-HLSKeplTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 153 PLLLVLFKINNIFNTLYFPL-------LFDCGSFYFMFYVFILfAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLK 225
Cdd:MTH00110  159 PLLVALLYIQNNLGSLNFLLlqlwaqpLPNSWSNNLLWLACMM-AFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 226 LGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMV 305
Cdd:MTH00110  238 LGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMI 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 306 GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLI 385
Cdd:MTH00110  318 AHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMG 397
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1824665767 386 FLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCL 437
Cdd:MTH00110  398 LNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
5-432 1.53e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 286.84  E-value: 1.53e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   5 LLMLCFLIPIGLLENCWWLVHSLMFLLSFIFMFSVYSYSDLNMIG--YFFGIDYFSFMLILLSFWIVSLMITASSSVYLF 82
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  83 SYHSN--FFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00206   86 EPINRqrIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 161 INNIFNTLYFPLL---FDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKI 237
Cdd:MTH00206  166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 238 ISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 318 SNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1824665767 398 MYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPL 432
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPV 440
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-440 1.32e-86

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 271.83  E-value: 1.32e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENCWWL-----VHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITA 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  76 SSSvYLFSYHSN---FFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASL 152
Cdd:MTH00127   81 SQN-HTAPEPINrqrMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 153 PLLLVLFKINNIFNTL------YFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKL 226
Cdd:MTH00127  160 PLLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKL 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 227 GGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVG 306
Cdd:MTH00127  240 GGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIA 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIF 386
Cdd:MTH00127  320 HGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGL 399
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1824665767 387 LSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGYFREYHLLFLHWFPLNILCLKSE 440
Cdd:MTH00127  400 GTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
113-379 5.54e-54

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 181.74  E-value: 5.54e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLF------DCGSFYFMFYVF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltggLNSSGLLLLFLL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPTMSF 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1824665767 346 WWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPY 379
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWI 281
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
8-399 2.10e-52

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 182.97  E-value: 2.10e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   8 LCFLIPIGLLENCWWL---VHSLMFLLSfIFMFSVYSYSDLNM-------------IGYFFGIDYFSFMLILLSFWIVSL 71
Cdd:COG1008    19 LLLLLPRRNARLARWValaVSLLTLLLS-LYLLAGFDPGTGGFqfvesypwipslgISYHLGVDGISLPLVLLTALLTPL 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  72 MITASSSVYlfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVAS 151
Cdd:COG1008    98 AILASWNEI--KKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGS 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 152 LPLL---LVLFKINNIFNTLYFPLLFDCGSFYFMFYVFILF--AFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKL 226
Cdd:COG1008   175 LLMLvaiLALYFLAGALTFDIAELAAAPLPLTAQLLLFLAFfiAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKM 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 227 GGYGIFRVMkiisfLGL------SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGS 300
Cdd:COG1008   255 GGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGA 329
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 301 LSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYM 380
Cdd:COG1008   330 VLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWL 409
                         410
                  ....*....|....*....
gi 1824665767 381 FLLLIFLSFFSAVYTLYMY 399
Cdd:COG1008   410 AILAALGLILTAAYLLWMY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
113-399 2.30e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 169.46  E-value: 2.30e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLL----FDCGSFYFMFYVFiL 188
Cdd:MTH00217  135 YILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALcclkIEKELQYFIFLGF-F 213
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 189 FAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQ 267
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQ 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 268 VDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWW 347
Cdd:MTH00217  294 VDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILM 373
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1824665767 348 FLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:MTH00217  374 LLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
52-397 5.55e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 168.95  E-value: 5.55e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  52 FGIDYFSFMLILLSFWIV--SLMITASSSVYLfsyhSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILG 129
Cdd:MTH00226   98 FAVDGISIYFIILTGFIVpcSILISWHSVKYL----TKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 130 WGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDC-----GSFYFMFYVFILFAFLVSMPMFLFHLWL 204
Cdd:MTH00226  174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 205 PSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL-SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00226  254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAqNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00226  334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1824665767 364 FGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLY 397
Cdd:MTH00226  414 IGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
113-399 1.08e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 167.93  E-value: 1.08e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTL-YFPLLFDCGSFYFMFYVFILF-- 189
Cdd:MTH00204  138 YILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTdYQILLNIKLPLSIQKWLLVGFfl 217
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 190 AFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQV 268
Cdd:MTH00204  218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFsWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQV 297
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 269 DLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWF 348
Cdd:MTH00204  298 DFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIML 377
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1824665767 349 LLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:MTH00204  378 VLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
7-399 4.24e-46

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 166.53  E-value: 4.24e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   7 MLCFLIPIGLLENCWW--LVHSLMFLLSFIFMFSVYSYSDLNM-------------IGYFFGIDYFSFMLILLSFWIVSL 71
Cdd:PRK05846   18 LLVLLTERFGARLARWiaLIGTLLTLLLSLVLWIGFDSSNAGFqfvekhpwiprfgISYHLGVDGISLLLVVLTALLTPL 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  72 MITASSSVylFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVAS 151
Cdd:PRK05846   98 AVLASWEE--IKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGG-KNRIYAATKFFLYTLLGS 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 152 LPLLLVLFkinnifnTLYFPLLFDCGSF---------------YFMFYVFiLFAFLVSMPMFLFHLWLPSAHVEAPISGS 216
Cdd:PRK05846  175 LLMLVAII-------YLVVVYYNATGTFdiadllnlplppgvqYWLFLAF-FIAFAVKMPMFPLHTWLPDAHVQAPTAGS 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 217 MILAGVLLKLGGYGIFRVMkiisfLGL------SFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLM 290
Cdd:PRK05846  247 VLLAGILLKMGAYGLLRFS-----LPLfpdashEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIF 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 291 TMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLL 370
Cdd:PRK05846  322 AGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
                         410       420
                  ....*....|....*....|....*....
gi 1824665767 371 NSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:PRK05846  402 LGSFQVNPVIAFIATTGLILAAVYSLWLY 430
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
48-399 1.05e-42

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 156.64  E-value: 1.05e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  48 IGYFFGIDYFSFMLILLSFWIVSLMITASSsvYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASW--ESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLI 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 128 LGWGyQPERLQAGIYLIFYTLVASLPLLLVL----FKINNIFN-TLYFPLLFDCGSFYFMFYVFiLFAFLVSMPMFLFHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLAIlglyFLGGGTFDlLELLNLPLPFGVQTWLFLAF-FIAFAVKVPLFPLHT 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 203 WLPSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 282 MSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSL 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1824665767 362 NLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:TIGR01972 385 GFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
19-419 2.32e-40

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 148.90  E-value: 2.32e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  19 NCWWLVHSLMFLLsFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITASSSVYLFSYHSNFFIFLVllllv 98
Cdd:MTH00094    2 SLLFFFSPFLFFL-FLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILIC----- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  99 tlYCSFSSLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDcgs 178
Cdd:MTH00094   76 --LLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLS--- 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 179 fYFMFYVFILfAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLglsFNYFWLSLSLFGGV 258
Cdd:MTH00094  151 -WEMFFILSL-SFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMI 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 259 IVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:MTH00094  226 LSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFS 305
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 339 LMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMYSYSQHGFYYSGIYTCSLGY 418
Cdd:MTH00094  306 SSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385

                  .
gi 1824665767 419 F 419
Cdd:MTH00094  386 S 386
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
53-364 6.30e-29

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 118.60  E-value: 6.30e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  53 GIDYFSFMLILLSFWIVSLMITASSSVylfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGY 132
Cdd:PRK12561   56 GVDGLSMPLVLLSGLITTLSIFASWKV---TRKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 133 QpERLQAGIYLIFYTLVASLPLL-----LVLFKINNIFNTLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSA 207
Cdd:PRK12561  133 Q-KRLYAATKFILYTALASIFILvaglaLALSGDTFTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDA 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 208 HVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVI 286
Cdd:PRK12561  212 HGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665767 287 GGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTmSFWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12561  292 LGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPK-TFALFTASSMASLALPGMSGF 368
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
113-379 5.44e-27

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 112.16  E-value: 5.44e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLL------FDCGSFYFMFyVF 186
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaeLDPGLLLAAF-AL 210
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLSFNYFWLSLSLFGGVIVSFIC 264
Cdd:COG0651   211 LLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGA 290
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 265 IRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMS 344
Cdd:COG0651   291 LAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTA 370
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1824665767 345 FWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPY 379
Cdd:COG0651   371 AAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAW 405
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
113-338 1.74e-22

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 99.77  E-value: 1.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQpERLQAGIYLIFYTLVASLPLL---LVLFKINNIFNTLYFPLLFDC--GSFYFMFYVFI 187
Cdd:PRK06473  133 FLFYELELIPLYLLIAIWGGQ-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRSHTlpLSTQLLLLAPI 211
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 188 LFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFIC-IR 266
Cdd:PRK06473  212 LVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIA 291
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1824665767 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473  292 QKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
53-358 3.29e-22

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 99.01  E-value: 3.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  53 GIDYFSFMLILLSFWIVSLMITASSSVylfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWGY 132
Cdd:PRK02546   84 GADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 133 QpERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLL------FDCGsFYFMFYVFILFAFLVSMPMFLFHLWLPS 206
Cdd:PRK02546  161 K-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTalaakdFGLG-FQLLCYAGLLIAYGVKLPIVPLHTWLPD 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 207 AHVEAPISGSMILAGVLLKLGGYGIFRVMkiISFLGLSFNYFWLSLSLFGGVIVSFICIR---QVDLKSLIAYSSVAHMS 283
Cdd:PRK02546  239 AHGEATAPVHMLLAGILLKMGGYALLRMN--AGMLPDAHAQFAPLLIVLGVVNIIYAALTsfaQRNLKRKIAYSSISHMG 316
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1824665767 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAP 358
Cdd:PRK02546  317 FVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
ndhD CHL00011
NADH dehydrogenase subunit 4
52-419 1.41e-20

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 93.86  E-value: 1.41e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  52 FGIDYFSFMLILLSFWIVSLMITASSSVylfSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLILGWG 131
Cdd:CHL00011   80 LGIDGLSIGPILLTGFITTLATLAAWPV---TRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWG 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 132 YQpERLQAGIYLIFYTLVASLPLLLVLFKI----NNIFnTLYFPLLFDCG---SFYFMFYVFILFAFLVSMPMFLFHLWL 204
Cdd:CHL00011  157 GK-KRLYSATKFILYTAGGSIFLLIGVLGMglygSNEP-TLNFETLANQSypvALEILFYIGFLIAYAVKLPIIPLHTWL 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 205 PSAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMS 283
Cdd:CHL00011  235 PDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMG 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 284 MVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNL 363
Cdd:CHL00011  315 FIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGF 394
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 364 FGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTL----YMYSYSQHGFYYSGIYTCSLGYF 419
Cdd:CHL00011  395 VAELIVFFGIITSQKYLLMPKILITFVMAIGMIltpiYLLSMLRQMFYGYKLFNVPNSYF 454
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
26-380 1.30e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 87.29  E-value: 1.30e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  26 SLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSfwivsLMITASSSVYLFSYHSNFFIFLVLLLLVTLYCSFS 105
Cdd:MTH00062   15 LLLFCLLYSSGVGCCILVVNNVFNGLFIFDSLSFYLILLV-----LFLGLYSQVMFYNLLSGVSRFFLFLSLIFSILCFC 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 106 SLSLLSFYIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCGSFYFMFYV 185
Cdd:MTH00062   90 VNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSVSLIVYY 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 186 FILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRvmkIISFLGLSFNYFWLSLSLFGGVIVSFICI 265
Cdd:MTH00062  170 VLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYR---FCGFIFSGSFLGYLFLCCLFSVFFLITAC 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSF 345
Cdd:MTH00062  247 SELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRV 326
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1824665767 346 WWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYM 380
Cdd:MTH00062  327 IVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYL 361
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
185-375 3.13e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 83.78  E-value: 3.13e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 185 VFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVM----KIISFLGLSFNYFWLSLSLFGGVIV 260
Cdd:PRK08375  206 GFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVG 285
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 261 SFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLM 340
Cdd:PRK08375  286 SLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRM 365
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1824665767 341 PTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIIS 375
Cdd:PRK08375  366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVE 400
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
113-357 6.69e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 82.84  E-value: 6.69e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKIN----------NIFNTLYFPLlfdcgSFYFM 182
Cdd:PRK07363  133 FLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVwlsgstsfdyDAISTQNLSL-----NTQLI 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 183 FYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL---SFNYFWLSLSLFGGVI 259
Cdd:PRK07363  207 LLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG-----LQLfpqTWSLVAPGLAIIGTIS 281
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 260 V---SFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGM 336
Cdd:PRK07363  282 ViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGL 361
                         250       260
                  ....*....|....*....|.
gi 1824665767 337 INLMPTMSFWWFLLSSSNMAA 357
Cdd:PRK07363  362 MNPIRGLPLTSALLVLAGMAS 382
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
181-379 8.05e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 82.71  E-value: 8.05e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 181 FMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLS------- 253
Cdd:PRK12667  223 GVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSpiliilg 302
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 254 LFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:PRK12667  303 AVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDEL 382
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1824665767 334 KGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPY 379
Cdd:PRK12667  383 AGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFY 428
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
184-379 2.26e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 81.13  E-value: 2.26e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 184 YVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIS-FLGLSF-NYFWLSLSLFGGVIVS 261
Cdd:PRK06458  217 FVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaAIGSDFpGRLLLIFGLLSVLVAA 296
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 262 FICIRQVDLKSLIAYSSVAHMSMV-----IGGLMtmnwwGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGM 336
Cdd:PRK06458  297 FFLLRQRDIKRLFAYSSIEHMGLIafalgIGGPL-----GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGL 371
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1824665767 337 INLMPTMSfWWFLLSSSNMAAPPSLNLF-GEFSLLNSIISWSPY 379
Cdd:PRK06458  372 LKVSPLTG-WGLMLGALAIAGMPPFGVFiSEFLILTAGLARGPL 414
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
178-399 3.47e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 68.24  E-value: 3.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 178 SFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLSFNYFWLSLSLF 255
Cdd:PRK08676  203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIF 282
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 256 GGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK08676  283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFD 362
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1824665767 336 MINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIISWSPYMFLLLIFLSFFSAVYTLYMY 399
Cdd:PRK08676  363 VFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSFAIFL 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
177-341 4.79e-12

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 67.71  E-value: 4.79e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 177 GSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL-----------SF 245
Cdd:PRK08668  192 TGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvpLF 271
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 246 NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERL 325
Cdd:PRK08668  272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRT 351
                         170
                  ....*....|....*.
gi 1824665767 326 GSRSLLINKGMINLMP 341
Cdd:PRK08668  352 GTTKISEMGGLIEKMP 367
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
114-374 2.32e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 62.44  E-value: 2.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 114 IFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCGSFYFMFYVFILFAFLV 193
Cdd:PRK08667  138 FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGI 217
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 194 SMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSFICIRQVDLKSL 273
Cdd:PRK08667  218 KAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGL 297
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 274 IAYSSVAHMSMV---IG--------GLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPT 342
Cdd:PRK08667  298 LAYSSIENIGIIlmgIGlyvifgvyGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPY 377
                         250       260       270
                  ....*....|....*....|....*....|..
gi 1824665767 343 MSFWWFLLSSSNMAAPPSLNLFGEFSLLNSII 374
Cdd:PRK08667  378 TSALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
186-375 7.46e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 60.90  E-value: 7.46e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 186 FILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKII-----SFLGLSFNYFWLSLSLFGGVIV 260
Cdd:PRK12662  214 FIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVFG 293
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 261 SFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLM 340
Cdd:PRK12662  294 SVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSM 373
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1824665767 341 PTMSFWWFLLSSSNMAAPPSLNLFGEFSLLNSIIS 375
Cdd:PRK12662  374 PKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
187-324 1.75e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 59.58  E-value: 1.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGgvivSFICIR 266
Cdd:PRK07234  190 IALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALL 265
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665767 267 QVDLKSLIAYSSVAHMSMVIGGlmtmnwwGFMGSLsLMVGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234  266 EKDLKRMLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
113-364 4.94e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.18  E-value: 4.94e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYlifYTLVASLPLLLVLFKINNIF---NTLYFPLLFDCGSFYFMFYVFILF 189
Cdd:PRK08376  147 FVFLEIMSIASYALVAFRNDTWEAIEAGIK---YMFVGSLASSMVLLGIALLYgqyGTLNMAYLAVKMSENPTVVAKIAL 223
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 190 AFLVSMPMFL-----FHLWLPSAHVEAPISGSMILagVLLKLGG-YGIFRVmkIISFLGLSFNYF---WL-----SLSLF 255
Cdd:PRK08376  224 ALFIAGLAMKsgavpVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV--LFSIYGPAINLAtvgWViiilgCLTMF 299
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 256 GGVIVSFIcirQVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGFM---GSLSLMVGHGLCSSGLFCLSNIIYE 323
Cdd:PRK08376  300 VGVAMAVV---QKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIY 376
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1824665767 324 RLGSRSLLINKGMINLMPTMSFwWFLLSSSNMAAPPSLNLF 364
Cdd:PRK08376  377 ETGTRNLNELGGLARTMPKTTI-AFLIGAAAIVGLPPFNGF 416
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
185-364 1.50e-08

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 56.82  E-value: 1.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 185 VFIL--FAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVmkIISFLG---LSFNYFWLSLSLFGGVI 259
Cdd:PRK06521  212 VFLLalFGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISAVL 289
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 260 VSFICIRQVDLKSLIAYSSVAHM---SMVIG--------GLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSR 328
Cdd:PRK06521  290 GVLYALAEHDLKRLLAYSTIENIgiiFVGLGlamvfiayGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTR 369
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1824665767 329 SLLINKGMINLMPTMSfWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK06521  370 DMEKLGGLIRRMPWTA-WAFLIGCLAISALPPLNGF 404
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-91 3.59e-08

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 51.37  E-value: 3.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767   1 MLKYLLMLCFLIPIGLLENCWWL-----VHSLMFLLSFIFMFSVYSYSDLNMIGYFFGIDYFSFMLILLSFWIVSLMITA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90
                  ....*....|....*...
gi 1824665767  76 SSSVYLFS--YHSNFFIF 91
Cdd:pfam01059  81 SQKHLKSEpnNRQRTFIF 98
PRK12646 PRK12646
DUF4040 family protein;
113-364 5.95e-08

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 55.15  E-value: 5.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLF-------DCGSFYFMFYV 185
Cdd:PRK12646  136 YVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILgqadhikNHGLFIPMIFM 215
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 186 FILFAFLVSmPMFLFHLWLPSAhVEAPISGSMIL-AGVLLKLGgygIFRVMKIISFLGLSFNYFWLSLslFGGVIV---- 260
Cdd:PRK12646  216 FLLGAFTKS-AQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAG---IFLLFRFTPLLGLSNMYIYIVT--FVGLITmlfg 288
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 261 SFICIRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGFMGSLSLMV---------GHGLCSSGLFCLSNIIYERLG 326
Cdd:PRK12646  289 SITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYVFVlfaalfhlmNHAIFKCALFMGVGIIDHEAG 368
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1824665767 327 SRSLLINKGMINLMPTMSFwWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12646  369 TRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLNGF 405
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
184-365 1.16e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 53.82  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 184 YVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIsFLGLSFNYFWLSLSLFGGVIVSFI 263
Cdd:PRK12665  212 FAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILG 290
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 264 CIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTM 343
Cdd:PRK12665  291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLL 370
                         170       180
                  ....*....|....*....|..
gi 1824665767 344 SFWWFLlsssnmaapPSLNLFG 365
Cdd:PRK12665  371 AVLFFV---------PALNLGG 383
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
187-370 1.33e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 53.62  E-value: 1.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 187 ILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWL--SLSLFGGVIVSFIC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 265 IRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMS 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371
                         170       180
                  ....*....|....*....|....*.
gi 1824665767 345 FWWFLLSSSNMAAPPSLNLFGEFSLL 370
Cdd:PRK08377  372 LALTIGALSTVGIPLFNVFWSKFRII 397
PRK12650 PRK12650
DUF4040 family protein;
190-361 9.06e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 51.58  E-value: 9.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 190 AFLVSMPMFL------FHLWLPSAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKIisflglsFNYFWLSLSLFGG 257
Cdd:PRK12650  211 AVLIAVAAFTksaqfpFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMITA 283
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 258 VIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMI 337
Cdd:PRK12650  284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLW 363
                         170       180
                  ....*....|....*....|....
gi 1824665767 338 NLMPtMSFWWFLLSSSNMAAPPSL 361
Cdd:PRK12650  364 RRMP-FTFVSVTIAALSMAAVPPL 386
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
201-372 1.30e-06

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 50.60  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 201 HLWLPSAHVEAPISGSMILAGVLLKLGGYGIFrvmkIISFLGLSFNYFWLSLSLFGGVIVSFI----CIRQVDLKSLIAY 276
Cdd:PRK08042  200 HGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLAY 275
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 277 SSVAHMSMVIGGL-----------MTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSF 345
Cdd:PRK08042  276 HTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI 355
                         170       180
                  ....*....|....*....|....*...
gi 1824665767 346 wWFLLSSSNMAAPPSLNLF-GEFSLLNS 372
Cdd:PRK08042  356 -AMLVGLMAMAALPPLNGFaGEWVIYQS 382
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-370 1.15e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 44.42  E-value: 1.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767  59 FMLILLSFWIVSLMITASSSVYLFSYHSNFFIFLVLLLLVTLYCSFSSLSLLSFYIFFESSLIPTMLLIlGWGYQPERLQ 138
Cdd:PRK06589   88 FLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLS 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 139 AGI-YLIFYTLVASLPLLLVLFKINNIFNTLYFPllfDCGSFYFMFYVFILFAF---LVSMPMFLFHLWLPSAHVEAPIS 214
Cdd:PRK06589  167 GGYkYLKILMISALLLFLPAVILIYTKTGNLDFV---SGGLFSKNQSIILLLMFiygIAKTAIFPVHSWLPAAMVAHYPV 243
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 215 GSMILAGVLLKLGGYGIFRVMKIISFLG-----LSFNYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGL 289
Cdd:PRK06589  244 SALLHAVIVVKTGLFCIYKILLYIFGLSylqriFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSA 323
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 290 MTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPSLNLFGEFSL 369
Cdd:PRK06589  324 FILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLI 403

                  .
gi 1824665767 370 L 370
Cdd:PRK06589  404 L 404
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
184-370 2.64e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 43.04  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 184 YVFILFAFLVSMPMFLFHLWLPSAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISFLGLSFNYFWLSLSLFGGVIVSF 262
Cdd:PRK06525  210 FLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFL 288
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 263 ICIRQVDLKSLIAYSSVAHMSMVIGGLMTM---NWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINL 339
Cdd:PRK06525  289 MYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKK 368
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1824665767 340 MPTMSFWWFLLSSSNMAAPPSLNLFGEFSLL 370
Cdd:PRK06525  369 LPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
113-365 2.78e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.37  E-value: 2.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLIlgwGYQPER-------LQAgiylIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCG------SF 179
Cdd:PRK12647  121 FVFWELTSITSFLLI---GFNHEReaarraaLQA----LLVTGGGGLALLAGLILLGNVTGTYSLSELLASGdvirehPL 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 180 YFMFYVFILFAFLVSMPMFLFHLWLPSAhVEAPI-------SGSMILAGVLLklggygifrVMKIISFLGLSFNYFWLsL 252
Cdd:PRK12647  194 YLAILLLVLGGAFTKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---------LARLNPVLGGTPLWQTI-L 262
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 253 SLFGG---VIVSFICIRQVDLKSLIAYSSVahmsMVIGGLMTMNWWG----FMGSLSLMVGHGLCSSGLFCLSNIIYERL 325
Cdd:PRK12647  263 PLFGGltmLTGALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGselaIKAAVLFLVAHSLYKGALFMVAGIIDHET 338
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1824665767 326 GSRSLLINKGMINLMPTMSFWWFLLSSSNMAAPPslnLFG 365
Cdd:PRK12647  339 GTRDITKLGGLRRAMPITAAAALLAALSMAGLPP---LFG 375
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
113-364 8.01e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 41.74  E-value: 8.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLLFDCGS---------FYFMF 183
Cdd:PRK12649  137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghpLFLIT 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 184 YVFILFAFLVSMPMFLFHLWLPSAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIISflGLSFNYFWLS-LSLFGGVIVS 261
Cdd:PRK12649  217 LILIFIGAAAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIFS--GTEAWFILVSgTGMITMVLAG 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 262 FICIRQVDLKSLIAYSSVAHMSMviggLMTMNWW--------GFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:PRK12649  294 FLAFRQTDIKAILAYSTISQLAY----LMTMYGYttyhepglGVAAATFHLLNHATFKACLFLVAGIVAHEAATRDIRKL 369
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1824665767 334 KGMINLMPtMSFWWFLLSSSNMAAPPSLNLF 364
Cdd:PRK12649  370 GGLRKEMP-ITFIVASIAALAMAGIPPLNGF 399
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
185-315 8.76e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 41.34  E-value: 8.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 185 VFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLlKLGGYGIFRVMKIISFLGLSF---NYFWLsLSLFGGVIVS 261
Cdd:PRK05777  208 VFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVLLRLLVVAFGGLSEdwqQVLAI-IAIASMLVGN 285
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1824665767 262 FICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:PRK05777  286 LAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
185-315 1.22e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 40.87  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 185 VFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLlKLGGYGIFrvMKIISFLGLSFNYFWLS-------LSLFGG 257
Cdd:COG1007   207 VLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAAL--LRLLVEAFPGLAADWQLllavlavLSMTVG 283
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1824665767 258 vivSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:COG1007   284 ---NLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAF 338
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
167-315 4.20e-03

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 39.16  E-value: 4.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 167 TLYFPLLFDCGSFYFMFYVFILFAFLVSMPMFLFHLWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMK-IISFLGLSF 245
Cdd:TIGR01770 189 LLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLyILFGFSEAW 268
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 246 NYFWLSLSLFGGVIVSFICIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLF 315
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAF 338
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
113-359 9.32e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.39  E-value: 9.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 113 YIFFESSLIPTMLLILgWGYQPERLQAGIYLIFYTLVASLPLLLVLFKINNIFNTLYFPLL------FDCGSFYFMFYVF 186
Cdd:PRK12663  134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGDTATLTTIALL 212
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 187 ILFAFLVSMPMFLFHlWLPSAHVEAPISGSMILAGVLLKLGGYGIFRVMKII----SFLGLSFNYFWLSLSLFGGVIVSf 262
Cdd:PRK12663  213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqeRELLHPLLATMAAITMVIGALGA- 290
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665767 263 icIRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGFMGSLSLMVGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPT 342
Cdd:PRK12663  291 --LAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPL 368
                         250
                  ....*....|....*..
gi 1824665767 343 MSFWWFLLSSSNMAAPP 359
Cdd:PRK12663  369 FGALFLILIFAIGGLPP 385
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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