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Conserved domains on  [gi|1824665891|ref|YP_009740829|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Traulia lofaoshana]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 12-115 3.81e-45

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 141.84  E-value: 3.81e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTT 91
Cdd:MTH00161   10 LLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLI 89

                          90       100
                  ....*....|....*....|....
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00161   90 TSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 12-115 3.81e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 141.84  E-value: 3.81e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTT 91
Cdd:MTH00161   10 LLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLI 89

                          90       100
                  ....*....|....*....|....
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00161   90 TSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.22e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 97.11  E-value: 1.22e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  19 MMLATILSKKTiYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKtSNIMIWTTSTMFFIM 98
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1824665891  99 ILLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-115 1.57e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 84.79  E-value: 1.57e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTiYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWtT 91
Cdd:COG0838    16 LGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGL-I 93

                          90       100
                  ....*....|....*....|....
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQW 115
Cdd:COG0838    94 EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 12-115 3.81e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 141.84  E-value: 3.81e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTT 91
Cdd:MTH00161   10 LLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLI 89

                          90       100
                  ....*....|....*....|....
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00161   90 TSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 12-116 1.43e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 135.76  E-value: 1.43e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTT 91
Cdd:MTH00148   12 LILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLT 91

                          90       100
                  ....*....|....*....|....*
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQWA 116
Cdd:MTH00148   92 SLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 12-116 3.65e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 124.33  E-value: 3.65e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTT 91
Cdd:MTH00202   12 ILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLL 91

                          90       100
                  ....*....|....*....|....*
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQWA 116
Cdd:MTH00202   92 GGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 13-116 1.29e-32

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 110.33  E-value: 1.29e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  13 LIPMTVMMLATILSKKTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTTS 92
Cdd:MTH00012   13 ILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYT 92

                          90       100
                  ....*....|....*....|....
gi 1824665891  93 TMFFIMILLGGLYHEWNQGALQWA 116
Cdd:MTH00012   93 SILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 13-117 3.30e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 104.25  E-value: 3.30e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  13 LIPMTVMMLATILSKKTIYdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTTS 92
Cdd:MTH00106   12 LLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTM 90

                          90       100
                  ....*....|....*....|....*
gi 1824665891  93 TMFFIMILLGGLYHEWNQGALQWAD 117
Cdd:MTH00106   91 ALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 32-117 5.51e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 98.52  E-value: 5.51e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTTSTMFFIMILLGGLYHEWNQG 111
Cdd:MTH00042   31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLVYEWVNG 110


                  ....*.
gi 1824665891 112 ALQWAD 117
Cdd:MTH00042  111 GLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.22e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 97.11  E-value: 1.22e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  19 MMLATILSKKTiYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKtSNIMIWTTSTMFFIM 98
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1824665891  99 ILLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 16-117 1.36e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 97.68  E-value: 1.36e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  16 MTVMMLATILSKKTIY----------DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI---VIIMK 82
Cdd:MTH00136    5 TTILTITIALSLILAIvsfwlpqmtpDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgDQLPS 84

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1824665891  83 TSNIMIWTTStmffIMILLG-GLYHEWNQGALQWAD 117
Cdd:MTH00136   85 PLLTFFWATA----VLILLTlGLIYEWLQGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 12-116 9.21e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 95.33  E-value: 9.21e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKkTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTT 91
Cdd:MTH00113   11 LALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLT 89

                          90       100
                  ....*....|....*....|....*
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQWA 116
Cdd:MTH00113   90 WATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-117 1.69e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 94.68  E-value: 1.69e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  16 MTVMMLATILSKKTIY----------DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI---VIIMK 82
Cdd:MTH00069    3 MLMLLISTILSLILITisfwlplnnpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1824665891  83 TSNIMIWTTstmfFIMILLG-GLYHEWNQGALQWAD 117
Cdd:MTH00069   83 PTNTLFWST----LILILLTlGLIYEWIQGGLEWAE 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 16-115 3.28e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 91.50  E-value: 3.28e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  16 MTVMMLATILSK--KTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNimIWTTST 93
Cdd:MTH00203   13 LLSLILLFIAFWlpKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSS--LSLLLA 90

                          90       100
                  ....*....|....*....|..
gi 1824665891  94 MFFIMILLGGLYHEWNQGALQW 115
Cdd:MTH00203   91 FLFLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-115 1.57e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 84.79  E-value: 1.57e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTiYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWtT 91
Cdd:COG0838    16 LGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGL-I 93

                          90       100
                  ....*....|....*....|....
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQW 115
Cdd:COG0838    94 EMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 13-116 3.62e-22

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 83.76  E-value: 3.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  13 LIPMTVMMLATILSKKTiYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILP-IVIIMKTSNIMIWtt 91
Cdd:PRK06602   20 GLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwAVSFREIGWLGFV-- 96

                          90       100
                  ....*....|....*....|....*
gi 1824665891  92 STMFFIMILLGGLYHEWNQGALQWA 116
Cdd:PRK06602   97 EAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 1.47e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 72.05  E-value: 1.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILP-IVIIMKTSNIMIWTtsTMFFIMILLGGLYHEWNQ 110
Cdd:MTH00055   35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPwCVVYNQIGLFGFWV--MYLFLIILTIGLIYEWVK 112


                  ....*
gi 1824665891 111 GALQW 115
Cdd:MTH00055  113 GGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-115 2.45e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 71.25  E-value: 2.45e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILP-IVIIMKTSNIMIWTtsTMFFIMILLGGLYHEWNQ 110
Cdd:MTH00018   30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPwCVLYNQIAPFGFWT--MVGFLFILTLGLIYEWIK 107


                  ....*
gi 1824665891 111 GALQW 115
Cdd:MTH00018  108 GGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 5.56e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 65.72  E-value: 5.56e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIM-IWTTSTmfFIMILLGGLYHEWNQ 110
Cdd:MTH00030   40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFsFWIVYT--FLIVLAIGLAYEWIK 117


                  ....*
gi 1824665891 111 GALQW 115
Cdd:MTH00030  118 GGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 7.61e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 47.04  E-value: 7.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTTSTMFFIMILLGGLYhEWNQG 111
Cdd:PRK07756   39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAY-AWKKK 117


                  ....
gi 1824665891 112 ALQW 115
Cdd:PRK07756  118 VLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 31-115 5.68e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 44.66  E-value: 5.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  31 YDREKSSPFECGFDPKSSARMP--FSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTTSTMFFIMILLGGLYhEW 108
Cdd:PRK07928   33 YNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTVFVAYAY-VW 111


                  ....*..
gi 1824665891 109 NQGALQW 115
Cdd:PRK07928  112 RRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
12-115 1.40e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 43.89  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTI-YDRE--KSSPFECGFDP-KSSARMpfSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIM 87
Cdd:PRK08489   21 FVAFFLTTRLARFISRKLAqKNTEklKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLF 98

                          90       100
                  ....*....|....*....|....*...
gi 1824665891  88 IWtTSTMFFIMILLGGLYHEWNQGALQW 115
Cdd:PRK08489   99 GL-IEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 12-115 6.14e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 41.80  E-value: 6.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  12 FLIPMTVMMLATILSKKTiYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWtt 91
Cdd:MTH00092   12 LLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFSSLISFF-- 88

                          90       100
                  ....*....|....*....|....
gi 1824665891  92 stMFFIMIlLGGLYHEWNQGALQW 115
Cdd:MTH00092   89 --MLMIFI-FFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 26-115 1.35e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.34  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  26 SKKTIYDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPiviiMKTSNIMIWT-TSTMFFIMILLGGL 104
Cdd:MTH00060   28 NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLN----MPFQGLLFYNfWYYYFFLLLLFLGF 103

                          90
                  ....*....|.
gi 1824665891 105 YHEWNQGALQW 115
Cdd:MTH00060  104 VVELFSGYVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 3.87e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 34.79  E-value: 3.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1824665891  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIMIWTTSTMFFIMILLgGLYHEWNQG 111
Cdd:PRK06432   60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLF-AVYYAFKMG 138


                  ....
gi 1824665891 112 ALQW 115
Cdd:PRK06432  139 YMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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