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Conserved domains on  [gi|1864380615|ref|YP_009885842|]
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transglycosylase [Lactococcus phage CHPC964]

Protein Classification

lysozyme family protein( domain architecture ID 63)

lysozyme family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00121 super family cl31754
MAEBL; Provisional
 10-82 5.38e-03

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 37.04  E-value: 5.38e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1864380615   10 KSLKRKRKQKYEHIRQAKE----KALEEQRVSEENQRRVEAEKRAETDRIAREHDKETEQPESERTKEVSGEYENER 82
Cdd:PTZ00121  1639 KKKEAEEKKKAEELKKAEEenkiKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
Lyz-like super family cl00222
lysozyme-like domains; This family contains several members, including soluble lytic ...
 123-173 9.69e-03

lysozyme-like domains; This family contains several members, including soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, chitosanases, and pesticin. Typical members are involved in the hydrolysis of beta-1,4- linked polysaccharides.


The actual alignment was detected with superfamily member pfam01464:

Pssm-ID: 469668 [Multi-domain]  Cd Length: 114  Bit Score: 34.59  E-value: 9.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1864380615 123 VIYKESSGNPYVENPIGCWGLLQINQS---VHGQVSNLSPQEYLDKAVSIYQGS 173
Cdd:pfam01464  18 IAQQESGFNPKAVSKSGAVGLMQIMPStakRLGLRVNPGVDDLFDPEKNIKAGT 71
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 10-82 5.38e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 37.04  E-value: 5.38e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1864380615   10 KSLKRKRKQKYEHIRQAKE----KALEEQRVSEENQRRVEAEKRAETDRIAREHDKETEQPESERTKEVSGEYENER 82
Cdd:PTZ00121  1639 KKKEAEEKKKAEELKKAEEenkiKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
SLT pfam01464
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ...
 123-173 9.69e-03

Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.


Pssm-ID: 396169 [Multi-domain]  Cd Length: 114  Bit Score: 34.59  E-value: 9.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1864380615 123 VIYKESSGNPYVENPIGCWGLLQINQS---VHGQVSNLSPQEYLDKAVSIYQGS 173
Cdd:pfam01464  18 IAQQESGFNPKAVSKSGAVGLMQIMPStakRLGLRVNPGVDDLFDPEKNIKAGT 71
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 10-82 5.38e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 37.04  E-value: 5.38e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1864380615   10 KSLKRKRKQKYEHIRQAKE----KALEEQRVSEENQRRVEAEKRAETDRIAREHDKETEQPESERTKEVSGEYENER 82
Cdd:PTZ00121  1639 KKKEAEEKKKAEELKKAEEenkiKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
SLT pfam01464
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ...
 123-173 9.69e-03

Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.


Pssm-ID: 396169 [Multi-domain]  Cd Length: 114  Bit Score: 34.59  E-value: 9.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1864380615 123 VIYKESSGNPYVENPIGCWGLLQINQS---VHGQVSNLSPQEYLDKAVSIYQGS 173
Cdd:pfam01464  18 IAQQESGFNPKAVSKSGAVGLMQIMPStakRLGLRVNPGVDDLFDPEKNIKAGT 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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