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Conserved domains on  [gi|1878247255|ref|YP_009905677|]
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hypothetical protein H1Z36_gp089 [Lactococcus phage P1048]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02939 super family cl33600
transferase, transferring glycosyl groups
 189-364 7.20e-04

transferase, transferring glycosyl groups


The actual alignment was detected with superfamily member PLN02939:

Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 41.81  E-value: 7.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878247255 189 NDAKVQTYSKD---------DSLTESMQNMFKDL-------KFALNEIETI--EKGEPKLKLEDLLAKFSLTEEE--LSA 248
Cdd:PLN02939  111 IDNEQQTNSKDgeqlsdfqlEDLVGMIQNAEKNIlllnqarLQALEDLEKIltEKEALQGKINILEMRLSETDARikLAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878247255 249 KVKNYAEIPVEEVEKELAEFAKaeadadkkakakakedepkkakkPETSDNATIAKLEKQIEELKSENEKLKEEIKGLKA 328
Cdd:PLN02939  191 QEKIHVEILEEQLEKLRNELLI-----------------------RGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKA 247

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1878247255 329 kngkfELDnHVRECNDKVESFIETYGLDESAVKELD 364
Cdd:PLN02939  248 -----ELI-EVAETEERVFKLEKERSLLDASLRELE 277
 
Name Accession Description Interval E-value
PLN02939 PLN02939
transferase, transferring glycosyl groups
 189-364 7.20e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 41.81  E-value: 7.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878247255 189 NDAKVQTYSKD---------DSLTESMQNMFKDL-------KFALNEIETI--EKGEPKLKLEDLLAKFSLTEEE--LSA 248
Cdd:PLN02939  111 IDNEQQTNSKDgeqlsdfqlEDLVGMIQNAEKNIlllnqarLQALEDLEKIltEKEALQGKINILEMRLSETDARikLAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878247255 249 KVKNYAEIPVEEVEKELAEFAKaeadadkkakakakedepkkakkPETSDNATIAKLEKQIEELKSENEKLKEEIKGLKA 328
Cdd:PLN02939  191 QEKIHVEILEEQLEKLRNELLI-----------------------RGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKA 247

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1878247255 329 kngkfELDnHVRECNDKVESFIETYGLDESAVKELD 364
Cdd:PLN02939  248 -----ELI-EVAETEERVFKLEKERSLLDASLRELE 277
BRLZ smart00338
basic region leucin zipper;
302-339 3.53e-03

basic region leucin zipper;


Pssm-ID: 197664 [Multi-domain]  Cd Length: 65  Bit Score: 35.62  E-value: 3.53e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1878247255  302 IAKLEKQIEELKSENEKLKEEIKGLKAKNGKFELDNHV 339
Cdd:smart00338  28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSELEE 65
FtsB COG2919
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
299-341 4.68e-03

Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442163 [Multi-domain]  Cd Length: 96  Bit Score: 36.40  E-value: 4.68e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1878247255 299 NATIAKLEKQIEELKSENEKLKEEIKGLkaKNGKFELDNHVRE 341
Cdd:COG2919    35 RQEIAELEAENAKLKARNAELEAEVADL--KDGPDYIEERARE 75
bZIP cd14686
Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and ...
 302-330 6.17e-03

Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain; Basic leucine zipper (bZIP) factors comprise one of the most important classes of enhancer-type transcription factors. They act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes including cell survival, learning and memory, lipid metabolism, and cancer progression, among others. They also play important roles in responses to stimuli or stress signals such as cytokines, genotoxic agents, or physiological stresses. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription.


Pssm-ID: 269834 [Multi-domain]  Cd Length: 52  Bit Score: 34.83  E-value: 6.17e-03
                          10        20
                  ....*....|....*....|....*....
gi 1878247255 302 IAKLEKQIEELKSENEKLKEEIKGLKAKN 330
Cdd:cd14686    23 IEELEEEVEELEEENEELKAELEELRAEV 51
DivIC pfam04977
Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and ...
 299-327 6.25e-03

Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.


Pssm-ID: 428231 [Multi-domain]  Cd Length: 69  Bit Score: 35.27  E-value: 6.25e-03
                          10        20
                  ....*....|....*....|....*....
gi 1878247255 299 NATIAKLEKQIEELKSENEKLKEEIKGLK 327
Cdd:pfam04977  12 KQEIAQLQAEIAKLKQENEELEAEIKDLK 40
 
Name Accession Description Interval E-value
PLN02939 PLN02939
transferase, transferring glycosyl groups
 189-364 7.20e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 41.81  E-value: 7.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878247255 189 NDAKVQTYSKD---------DSLTESMQNMFKDL-------KFALNEIETI--EKGEPKLKLEDLLAKFSLTEEE--LSA 248
Cdd:PLN02939  111 IDNEQQTNSKDgeqlsdfqlEDLVGMIQNAEKNIlllnqarLQALEDLEKIltEKEALQGKINILEMRLSETDARikLAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878247255 249 KVKNYAEIPVEEVEKELAEFAKaeadadkkakakakedepkkakkPETSDNATIAKLEKQIEELKSENEKLKEEIKGLKA 328
Cdd:PLN02939  191 QEKIHVEILEEQLEKLRNELLI-----------------------RGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKA 247

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1878247255 329 kngkfELDnHVRECNDKVESFIETYGLDESAVKELD 364
Cdd:PLN02939  248 -----ELI-EVAETEERVFKLEKERSLLDASLRELE 277
BRLZ smart00338
basic region leucin zipper;
302-339 3.53e-03

basic region leucin zipper;


Pssm-ID: 197664 [Multi-domain]  Cd Length: 65  Bit Score: 35.62  E-value: 3.53e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1878247255  302 IAKLEKQIEELKSENEKLKEEIKGLKAKNGKFELDNHV 339
Cdd:smart00338  28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSELEE 65
FtsB COG2919
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
299-341 4.68e-03

Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442163 [Multi-domain]  Cd Length: 96  Bit Score: 36.40  E-value: 4.68e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1878247255 299 NATIAKLEKQIEELKSENEKLKEEIKGLkaKNGKFELDNHVRE 341
Cdd:COG2919    35 RQEIAELEAENAKLKARNAELEAEVADL--KDGPDYIEERARE 75
bZIP cd14686
Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and ...
 302-330 6.17e-03

Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain; Basic leucine zipper (bZIP) factors comprise one of the most important classes of enhancer-type transcription factors. They act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes including cell survival, learning and memory, lipid metabolism, and cancer progression, among others. They also play important roles in responses to stimuli or stress signals such as cytokines, genotoxic agents, or physiological stresses. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription.


Pssm-ID: 269834 [Multi-domain]  Cd Length: 52  Bit Score: 34.83  E-value: 6.17e-03
                          10        20
                  ....*....|....*....|....*....
gi 1878247255 302 IAKLEKQIEELKSENEKLKEEIKGLKAKN 330
Cdd:cd14686    23 IEELEEEVEELEEENEELKAELEELRAEV 51
DivIC pfam04977
Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and ...
 299-327 6.25e-03

Septum formation initiator; DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.


Pssm-ID: 428231 [Multi-domain]  Cd Length: 69  Bit Score: 35.27  E-value: 6.25e-03
                          10        20
                  ....*....|....*....|....*....
gi 1878247255 299 NATIAKLEKQIEELKSENEKLKEEIKGLK 327
Cdd:pfam04977  12 KQEIAQLQAEIAKLKQENEELEAEIKDLK 40
ZapB pfam06005
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is ...
 301-334 7.78e-03

Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation.


Pssm-ID: 428718 [Multi-domain]  Cd Length: 71  Bit Score: 34.93  E-value: 7.78e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1878247255 301 TIAKLEKQIEELKSENEKLKEEIKGLKAKNGKFE 334
Cdd:pfam06005  19 TIALLQMENEELKEENEELKEEANELEEENQQLK 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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