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Conserved domains on  [gi|1938373640|ref|YP_009964098|]
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WhiB family transcriptional regulator [Mycobacterium phage Rem711]

Protein Classification

WhiB family transcriptional regulator( domain architecture ID 2437)

WhiB family transcriptional regulator is involved in cell division, spore formation, nutrient starvation, pathogenesis, antibiotic resistance, and stress response

Gene Ontology:  GO:0046872|GO:0003677|GO:0051536|GO:0051539
PubMed:  22388511

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Whib super family cl03604
Transcription factor WhiB; WhiB is a putative transcription factor in Actinobacteria, required ...
 59-119 1.47e-08

Transcription factor WhiB; WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.


The actual alignment was detected with superfamily member pfam02467:

Pssm-ID: 426788  Cd Length: 65  Bit Score: 48.04  E-value: 1.47e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1938373640  59 DMFFPVSGRSHvakrryanQIERGKAVCQQCPVRLACEQYRASLQDPHGLWGGRDEFDRDE 119
Cdd:pfam02467  13 ELFFPPGARGA--------REREAKAVCARCPVRRECLAHALENGEEYGVWGGLTERERRA 65
 
Name Accession Description Interval E-value
Whib pfam02467
Transcription factor WhiB; WhiB is a putative transcription factor in Actinobacteria, required ...
 59-119 1.47e-08

Transcription factor WhiB; WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.


Pssm-ID: 426788  Cd Length: 65  Bit Score: 48.04  E-value: 1.47e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1938373640  59 DMFFPVSGRSHvakrryanQIERGKAVCQQCPVRLACEQYRASLQDPHGLWGGRDEFDRDE 119
Cdd:pfam02467  13 ELFFPPGARGA--------REREAKAVCARCPVRRECLAHALENGEEYGVWGGLTERERRA 65
 
Name Accession Description Interval E-value
Whib pfam02467
Transcription factor WhiB; WhiB is a putative transcription factor in Actinobacteria, required ...
 59-119 1.47e-08

Transcription factor WhiB; WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.


Pssm-ID: 426788  Cd Length: 65  Bit Score: 48.04  E-value: 1.47e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1938373640  59 DMFFPVSGRSHvakrryanQIERGKAVCQQCPVRLACEQYRASLQDPHGLWGGRDEFDRDE 119
Cdd:pfam02467  13 ELFFPPGARGA--------REREAKAVCARCPVRRECLAHALENGEEYGVWGGLTERERRA 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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