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Conserved domains on  [gi|1980529002|ref|YP_009992011|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Nothoprocta perdicaria]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 1.76e-48

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 154.91  E-value: 1.76e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002   1 MTYFVLFLGVCLVLGALAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  81 SWGDLQVLGYGMGFMLVVL-LGIMAGHMVEGSVWAVGTVDCGGLVSVRMDFSGVAMFYSWGAGLFMVVGWGLLLTLFVVL 159
Cdd:MTH00115   81 AWGDWGVVGYVVGFVLVVVvVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1980529002 160 ELVRGVSRGAIRAV 173
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 1.76e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 154.91  E-value: 1.76e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002   1 MTYFVLFLGVCLVLGALAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  81 SWGDLQVLGYGMGFMLVVL-LGIMAGHMVEGSVWAVGTVDCGGLVSVRMDFSGVAMFYSWGAGLFMVVGWGLLLTLFVVL 159
Cdd:MTH00115   81 AWGDWGVVGYVVGFVLVVVvVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1980529002 160 ELVRGVSRGAIRAV 173
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-161 9.72e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 48.65  E-value: 9.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  17 LAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSL-AADPYPESWGDLQVLGYGMGFM 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1980529002  96 LVVLLGIMAGHMVEGSVWAVGTVDCGGLVSVrmdfSGVAMFYSWGaGLFMVVGWGLLLTLFVVLEL 161
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEA----IGELLFTDYL-LPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 1.76e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 154.91  E-value: 1.76e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002   1 MTYFVLFLGVCLVLGALAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  81 SWGDLQVLGYGMGFMLVVL-LGIMAGHMVEGSVWAVGTVDCGGLVSVRMDFSGVAMFYSWGAGLFMVVGWGLLLTLFVVL 159
Cdd:MTH00115   81 AWGDWGVVGYVVGFVLVVVvVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1980529002 160 ELVRGVSRGAIRAV 173
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 2.72e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 154.14  E-value: 2.72e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002   1 MTYFVLFLGVCLVLGALAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  81 SWGDLQVLGYGMGFMLVVLLGIMAGHMVEGSVWAVGTVDCGGLVSVRMDFSGVAMFYSWGAGLFMVVGWGLLLTLFVVLE 160
Cdd:MTH00138   81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 1980529002 161 LVRGVSRGAIRAV 173
Cdd:MTH00138  161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-173 9.42e-43

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 139.98  E-value: 9.42e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002   1 MTYFVLFLGVCLVLGALAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00065    1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  81 SWGDLQVLGYGMGFMLVVLLGIMAGHMVEgSVWAVGTVDCGGLVSVRMDFSGVAMFYSWGAGLFMVVGWGLLLTLFVVLE 160
Cdd:MTH00065   81 AWGSWSVLVYVLFYLLLLIVGYILFGCNF-SLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLE 159

                         170
                  ....*....|...
gi 1980529002 161 LVRGVSRGAIRAV 173
Cdd:MTH00065  160 VTRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-164 3.73e-22

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 87.55  E-value: 3.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002   1 MTYFVLFLGVCLVLGALAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00109    2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  81 SWGD------LQVLGYGMGFMLVVLLGIMAGHMVEGSVWAVGTV---DCGGLVSVRMDFSGVAMFYSWGAGLFMVVGWGL 151
Cdd:MTH00109   82 TWVSnkvvlgALLLGLLMELLLVLYVLKDDEVEVVFNFNGLGDWviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                         170
                  ....*....|...
gi 1980529002 152 LLTLFVVLELVRG 164
Cdd:MTH00109  162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-173 7.99e-22

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 86.58  E-value: 7.99e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002   1 MTYFVLFLGVCLVLGALAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00214    1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  81 SWGDLQVLGYGMGFMLVVLLGIMAGHM-VEGSVWAVGTVDCGglvsvrMDFSGVAMFYSWGAGLFMVVGWGLLLTLFVVL 159
Cdd:MTH00214   81 SWGGWSVLLFFLFYLLGLGFVGFYFYGgWEMLSWMGVDEANN------LDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVL 154

                         170
                  ....*....|....
gi 1980529002 160 ELVRGVSRGAIRAV 173
Cdd:MTH00214  155 ELVRGLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 10-172 3.49e-12

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 61.07  E-value: 3.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  10 VCLVLGALAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSLAADPYPESWGDLQVLG 89
Cdd:MTH00045    8 ILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGEVLV 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  90 YGMGFMLVVLLGIMAghmvegsvwAVGTVDCGGLVSVRMDFSGVAMFYSWGAGLFMVVGWGLLLTLFVVLELVRGVSRGA 169
Cdd:MTH00045   88 LSLLLSLWVFISFDN---------FLELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHEYSS 158


                  ...
gi 1980529002 170 IRA 172
Cdd:MTH00045  159 LRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-161 9.72e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 48.65  E-value: 9.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980529002  17 LAVASNPSPYYGVLGLVVGSVVGCGWLVSLGASFIALVLFLVYLGGMLVVFVYSVSL-AADPYPESWGDLQVLGYGMGFM 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1980529002  96 LVVLLGIMAGHMVEGSVWAVGTVDCGGLVSVrmdfSGVAMFYSWGaGLFMVVGWGLLLTLFVVLEL 161
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEA----IGELLFTDYL-LPFELASVLLLVALVGAIVL 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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