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Conserved domains on  [gi|2037173309|ref|YP_010060503|]
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DNA primase [Mycobacterium phage BabyRay]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CHC2 super family cl21601
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 30-83 2.01e-16

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


The actual alignment was detected with superfamily member smart00400:

Pssm-ID: 451328 [Multi-domain]  Cd Length: 55  Bit Score: 68.09  E-value: 2.01e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2037173309   30 KCLCPFHGEERPSAAVSFRRGAFNCLACGVKGDVLTLIKKQEEVSYAKAQRIAE 83
Cdd:smart00400   2 KGLCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDKLSFVEAVKKLA 55
 
Name Accession Description Interval E-value
ZnF_CHCC smart00400
zinc finger;
30-83 2.01e-16

zinc finger;


Pssm-ID: 128681 [Multi-domain]  Cd Length: 55  Bit Score: 68.09  E-value: 2.01e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2037173309   30 KCLCPFHGEERPSAAVSFRRGAFNCLACGVKGDVLTLIKKQEEVSYAKAQRIAE 83
Cdd:smart00400   2 KGLCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDKLSFVEAVKKLA 55
zf-CHC2 pfam01807
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 7-85 1.78e-14

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


Pssm-ID: 426447 [Multi-domain]  Cd Length: 95  Bit Score: 64.19  E-value: 1.78e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2037173309   7 IVQVIRRYhpdwEAPKDTGRDWIKClCPFHGEERPSAAVSFRRGAFNCLACGVKGDVLTLIKKQEEVSYAKAqriAEEL 85
Cdd:pfam01807  14 IVDVVGQY----VKLKKRGKDYVGL-CPFHHEKTPSFTVSPDKQFYHCFGCGAGGDVIKFLMKIEKLSFVEA---VEKL 84
DnaG COG0358
DNA primase (bacterial type) [Replication, recombination and repair];
7-84 1.63e-11

DNA primase (bacterial type) [Replication, recombination and repair];


Pssm-ID: 440127 [Multi-domain]  Cd Length: 465  Bit Score: 60.15  E-value: 1.63e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2037173309   7 IVQVIRRYHPdweaPKDTGRDWiKCLCPFHGEERPSAAVSFRRGAFNCLACGVKGDVLTLIKKQEEVSYAKA-QRIAEE 84
Cdd:COG0358    16 IVDVIGEYVK----LKKAGRNY-KGLCPFHDEKTPSFTVSPEKQFYHCFGCGAGGDVISFLMEYEGLSFPEAvEELAER 89
 
Name Accession Description Interval E-value
ZnF_CHCC smart00400
zinc finger;
30-83 2.01e-16

zinc finger;


Pssm-ID: 128681 [Multi-domain]  Cd Length: 55  Bit Score: 68.09  E-value: 2.01e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2037173309   30 KCLCPFHGEERPSAAVSFRRGAFNCLACGVKGDVLTLIKKQEEVSYAKAQRIAE 83
Cdd:smart00400   2 KGLCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDKLSFVEAVKKLA 55
zf-CHC2 pfam01807
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 7-85 1.78e-14

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


Pssm-ID: 426447 [Multi-domain]  Cd Length: 95  Bit Score: 64.19  E-value: 1.78e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2037173309   7 IVQVIRRYhpdwEAPKDTGRDWIKClCPFHGEERPSAAVSFRRGAFNCLACGVKGDVLTLIKKQEEVSYAKAqriAEEL 85
Cdd:pfam01807  14 IVDVVGQY----VKLKKRGKDYVGL-CPFHHEKTPSFTVSPDKQFYHCFGCGAGGDVIKFLMKIEKLSFVEA---VEKL 84
DnaG COG0358
DNA primase (bacterial type) [Replication, recombination and repair];
7-84 1.63e-11

DNA primase (bacterial type) [Replication, recombination and repair];


Pssm-ID: 440127 [Multi-domain]  Cd Length: 465  Bit Score: 60.15  E-value: 1.63e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2037173309   7 IVQVIRRYHPdweaPKDTGRDWiKCLCPFHGEERPSAAVSFRRGAFNCLACGVKGDVLTLIKKQEEVSYAKA-QRIAEE 84
Cdd:COG0358    16 IVDVIGEYVK----LKKAGRNY-KGLCPFHDEKTPSFTVSPEKQFYHCFGCGAGGDVISFLMEYEGLSFPEAvEELAER 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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